LOC110533653 (LOC106603526)


Basic Information

Item Value
gene id LOC110533653
gene name LOC106603526
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32353917 ~ 32356646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618081.2
TTTAACAATAGTTAACCTGCTAAATTAGCTTAATGTTTACATGCAACGAGTTCTTGgcagcctgttttgtgttgtaaGGTAGGCTTTGCTTGCTACATACTTCAAGGGCATTGAGATTCATTGATGGATGAAACCACTCATGGGGAATTTGGACCATCATTACAGCACATCAGTGAAACATGAAAAAAGAGATTGCAGCAGTGGTGTTGTTCCTGAAAAGACTGATCAAAAAGGTGGAAAAGTTGGACACCCAGAAAGTGGACATGTTTGTGGAGCAGTTGACTGTTGCCCTGCAGGAGAAGTTCAGGGGGCATTGGTACCCTGACAACCCCAGCAAAGGACAGGCCTTCAGGTGTATTCGGCTGAACAGGTTGCAGAAGGAGGATCCAGAGTTGCTGCGGGCCTGCCAGGAGAGTGGGGTTCAGTACAAGGACCTTGGCCTGCCCAGAGAACTCACTCTGTGGGTAGACCCTGGGGAGGTGTGCTGCAGGTATGGAGAGAAGAACCATGCTTTCACGGTGGCCAGTTTCTTTGGTGATGAGACTGTGACTAAGAAGGTGACCAGTGCCGTGGAGAGGGTGACGTCTGACTACCACTCCGGTTCATCTTCAGAGGAGGATAGTGGCCTCAGGGAAACTCGTCCATCCACTACCTGCCCCCAAAATCACCACACATACCAGGTGATCTACCCATCTGCTCCTCTGTGGTGTCAAGCGCCCAATCAAAAGAAGATGGGGCCTGGTAAAGGATATAACGTCCCTCCACGTCCTCCTCGCTATGGCTTCAGACCTCAAGGCAGACCCACCCAGCCCTTCAGACACAAAGGCTTGGTTCTGCCTGGCCAGAGAGGGGGGCTCGGATACTGGGGTGGCACTCCAGGCCTGGCTTACTGTTAGGGACCACTGTAGCAAGTGTTGATGTTAGTATTAGCCTGTTCCAGGTTCCCTGAGCTGTTGAGGGTAACCACTAGAGCAAGCAATAGTTCATGGGTGACAGGTAGCCttgcggttaagagtgttgggtcagtaactgaaaggttgcggGTTTGAATCTCCGAGCCGACTAGGTACATCTGTTgatgtgccattgagcaaggcacttaacccttagtgctcctgtaagtcgctttggagaAGTGTCTGCTAAGTGACTGAAATGTTAGAGGGAAGGGGAAGGAAGTGGCAAACAAAGTCCACCAAGATGTTTGACCacatttttaatgtatttttgtaGTGAGATAGTCACTGGAATTTGTTATTTTTATGGTAAGAACATTAACTCTTTACACTTGAGAGAATTTGTATTCTTGTGAGTAAAATAATTAGTTGTAATGGATAAGGAATATAGGAATTTGATGTGTATTTTATAGCTATGAAGATAtatttactgtatttatttttgatGGGTTAATTGTATGTTACCTCCTACTGTACTGTCCATCAGTTATGTTCCAATgagaaattgttttatttattcagTGTATTAGTATTATGAATTGCGCTTACCACTTAAATTCTGAgacattaaacacatgttctaATCCTA
>XM_021618080.2
GGCTAAACTGGATTTATGCGTCACAGCGCGCCTTTCTGGACGAACACCCGCCAGACTGTAATGCCCTTTGGCTTTAACAATAGTTAACCTGCTAAATTAGCTTAATGTTTACATGCAACGAGTTCTTGgcagcctgttttgtgttgtaaGAATTTGGACCATCATTACAGCACATCAGTGAAACATGAAAAAAGAGATTGCAGCAGTGGTGTTGTTCCTGAAAAGACTGATCAAAAAGGTGGAAAAGTTGGACACCCAGAAAGTGGACATGTTTGTGGAGCAGTTGACTGTTGCCCTGCAGGAGAAGTTCAGGGGGCATTGGTACCCTGACAACCCCAGCAAAGGACAGGCCTTCAGGTGTATTCGGCTGAACAGGTTGCAGAAGGAGGATCCAGAGTTGCTGCGGGCCTGCCAGGAGAGTGGGGTTCAGTACAAGGACCTTGGCCTGCCCAGAGAACTCACTCTGTGGGTAGACCCTGGGGAGGTGTGCTGCAGGTATGGAGAGAAGAACCATGCTTTCACGGTGGCCAGTTTCTTTGGTGATGAGACTGTGACTAAGAAGGTGACCAGTGCCGTGGAGAGGGTGACGTCTGACTACCACTCCGGTTCATCTTCAGAGGAGGATAGTGGCCTCAGGGAAACTCGTCCATCCACTACCTGCCCCCAAAATCACCACACATACCAGGTGATCTACCCATCTGCTCCTCTGTGGTGTCAAGCGCCCAATCAAAAGAAGATGGGGCCTGGTAAAGGATATAACGTCCCTCCACGTCCTCCTCGCTATGGCTTCAGACCTCAAGGCAGACCCACCCAGCCCTTCAGACACAAAGGCTTGGTTCTGCCTGGCCAGAGAGGGGGGCTCGGATACTGGGGTGGCACTCCAGGCCTGGCTTACTGTTAGGGACCACTGTAGCAAGTGTTGATGTTAGTATTAGCCTGTTCCAGGTTCCCTGAGCTGTTGAGGGTAACCACTAGAGCAAGCAATAGTTCATGGGTGACAGGTAGCCttgcggttaagagtgttgggtcagtaactgaaaggttgcggGTTTGAATCTCCGAGCCGACTAGGTACATCTGTTgatgtgccattgagcaaggcacttaacccttagtgctcctgtaagtcgctttggagaAGTGTCTGCTAAGTGACTGAAATGTTAGAGGGAAGGGGAAGGAAGTGGCAAACAAAGTCCACCAAGATGTTTGACCacatttttaatgtatttttgtaGTGAGATAGTCACTGGAATTTGTTATTTTTATGGTAAGAACATTAACTCTTTACACTTGAGAGAATTTGTATTCTTGTGAGTAAAATAATTAGTTGTAATGGATAAGGAATATAGGAATTTGATGTGTATTTTATAGCTATGAAGATAtatttactgtatttatttttgatGGGTTAATTGTATGTTACCTCCTACTGTACTGTCCATCAGTTATGTTCCAATgagaaattgttttatttattcagTGTATTAGTATTATGAATTGCGCTTACCACTTAAATTCTGAgacattaaacacatgttctaATCCTA
>XM_021618079.2
gaacttatttaggcttgccataacaaaggggttgaatacttattgccACACGGAAGTGTCGTCATCGTTTGTGGCGCTGGCAGAATACTAATGAGGTTCAAACATTCATGAGTCGAGCTGGCAACAGTTGTCCACATGTTGATGAGCAGCAAATACGAATTTGGACCATCATTACAGCACATCAGTGAAACATGAAAAAAGAGATTGCAGCAGTGGTGTTGTTCCTGAAAAGACTGATCAAAAAGGTGGAAAAGTTGGACACCCAGAAAGTGGACATGTTTGTGGAGCAGTTGACTGTTGCCCTGCAGGAGAAGTTCAGGGGGCATTGGTACCCTGACAACCCCAGCAAAGGACAGGCCTTCAGGTGTATTCGGCTGAACAGGTTGCAGAAGGAGGATCCAGAGTTGCTGCGGGCCTGCCAGGAGAGTGGGGTTCAGTACAAGGACCTTGGCCTGCCCAGAGAACTCACTCTGTGGGTAGACCCTGGGGAGGTGTGCTGCAGGTATGGAGAGAAGAACCATGCTTTCACGGTGGCCAGTTTCTTTGGTGATGAGACTGTGACTAAGAAGGTGACCAGTGCCGTGGAGAGGGTGACGTCTGACTACCACTCCGGTTCATCTTCAGAGGAGGATAGTGGCCTCAGGGAAACTCGTCCATCCACTACCTGCCCCCAAAATCACCACACATACCAGGTGATCTACCCATCTGCTCCTCTGTGGTGTCAAGCGCCCAATCAAAAGAAGATGGGGCCTGGTAAAGGATATAACGTCCCTCCACGTCCTCCTCGCTATGGCTTCAGACCTCAAGGCAGACCCACCCAGCCCTTCAGACACAAAGGCTTGGTTCTGCCTGGCCAGAGAGGGGGGCTCGGATACTGGGGTGGCACTCCAGGCCTGGCTTACTGTTAGGGACCACTGTAGCAAGTGTTGATGTTAGTATTAGCCTGTTCCAGGTTCCCTGAGCTGTTGAGGGTAACCACTAGAGCAAGCAATAGTTCATGGGTGACAGGTAGCCttgcggttaagagtgttgggtcagtaactgaaaggttgcggGTTTGAATCTCCGAGCCGACTAGGTACATCTGTTgatgtgccattgagcaaggcacttaacccttagtgctcctgtaagtcgctttggagaAGTGTCTGCTAAGTGACTGAAATGTTAGAGGGAAGGGGAAGGAAGTGGCAAACAAAGTCCACCAAGATGTTTGACCacatttttaatgtatttttgtaGTGAGATAGTCACTGGAATTTGTTATTTTTATGGTAAGAACATTAACTCTTTACACTTGAGAGAATTTGTATTCTTGTGAGTAAAATAATTAGTTGTAATGGATAAGGAATATAGGAATTTGATGTGTATTTTATAGCTATGAAGATAtatttactgtatttatttttgatGGGTTAATTGTATGTTACCTCCTACTGTACTGTCCATCAGTTATGTTCCAATgagaaattgttttatttattcagTGTATTAGTATTATGAATTGCGCTTACCACTTAAATTCTGAgacattaaacacatgttctaATCCTA

Function

NR:

description
protein BTG3-like

GO: NA

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618081.2 False 1545 mRNA 0.45 5 32353917 32356080
XM_021618080.2 False 1550 mRNA 0.46 5 32353917 32356152
XM_021618079.2 True 1557 mRNA 0.46 5 32353917 32356646

Neighbor

gene id symbol gene type direction distance location
LOC110533652 LOC106603525 coding downstream 715 32246991 ~ 32353202 (-)
LOC110533647 LOC106603522 coding downstream 1193407 31154471 ~ 31160510 (-)
LOC110534882 NA coding downstream 1331692 31021462 ~ 31022225 (-)
LOC110533642 LOC106603612 coding downstream 1395722 30954608 ~ 30958195 (-)
LOC110533638 aspa coding downstream 1612133 30737046 ~ 30741784 (-)
LOC110533654 LOC106603527 coding upstream 12040 32368686 ~ 32422880 (-)
LOC110533655 LOC106603528 coding upstream 76240 32432886 ~ 32447490 (-)
LOC110533657 LOC106567954 coding upstream 105913 32462559 ~ 32485561 (-)
LOC110533656 LOC106603531 coding upstream 131681 32488327 ~ 32496739 (-)
LOC110533661 LOC106603536 coding upstream 167780 32524426 ~ 32557392 (-)
G879453 NA non-coding downstream 110670 32243021 ~ 32243247 (-)
G879371 NA non-coding downstream 239636 32106240 ~ 32114281 (-)
G879269 NA non-coding downstream 377355 31929936 ~ 31976562 (-)
G879295 NA non-coding downstream 381696 31970613 ~ 31972221 (-)
G878917 NA non-coding downstream 997520 31352071 ~ 31356397 (-)
G879515 NA non-coding upstream 31823 32388469 ~ 32418267 (-)
G879557 NA non-coding upstream 92307 32448953 ~ 32452117 (-)
G879580 NA non-coding upstream 165593 32522239 ~ 32522461 (-)
G879619 NA non-coding upstream 234819 32591465 ~ 32595689 (-)
G879622 NA non-coding upstream 245187 32601833 ~ 32602619 (-)
G879440 LOC106603524 other downstream 127981 32225432 ~ 32225936 (-)
G878962 NA other downstream 904754 31447482 ~ 31449163 (-)
LOC110533621 NA other downstream 2437412 29906094 ~ 29922728 (-)
G875194 NA other downstream 3368847 28941240 ~ 28985070 (-)
G879617 NA other upstream 229245 32585891 ~ 32588838 (-)
G879763 NA other upstream 433721 32790367 ~ 32790802 (-)
G880718 LOC106603546 other upstream 679517 33036163 ~ 33037883 (-)
LOC110533673 NA other upstream 797324 33153970 ~ 33251521 (-)
G880807 NA other upstream 806266 33162912 ~ 33165022 (-)

Expression

LOC110533653(LOC106603526) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
End of interactive chart.

LOC110533653(LOC106603526) Expression in each Bioproject

Bar chart with 21 bars.
LOC110533653(LOC106603526) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network