LOC110534887 (LOC106603535)


Basic Information

Item Value
gene id LOC110534887
gene name LOC106603535
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32505369 ~ 32519387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619809.2
ATGAGTTGGATGTACTCTCTCAGTCTGGCCGTGGCTCTTCTGGACCTCTGTAGGGGACACAGCACGTTGTTTAAAGGATATGACCTGTCTATGTCCAGCTACCACCTGTGTACTGGACATGAGAGCACGGTGGTGAGTAAAATGTGGTCCTATAAGACCTCCTACAGGGACCGGAGGTCGTGTGGCGGATGGCTACCCTGGAAGACGTGTGTGGTCACTCTTTACAAAACAGCCTATTGGACTGAGTACATGAATGTCACCGAGGAGGTTATGAGGTGCTGTGACGGCTATGAACAAGTGGGCAGCTACTGTGCTTTACCTATGAACAGAAGTGGAGAGTTCACTGCCAAACCAGGCTCCTGCCCCAAGGGTGTAGTGGACGCACCCAGGAATACAGGGTGTGAATGGGACTCAGACTGTCCAGGGTGGCAAAAGTGCTGCCAGAGAGAGGGCCTCTCTTTTTGCACCAACCCTCAACATACAGGCAATAGAGGCTGTTGCTTCAACGTCACTGTGACCGTGAAGACAGATTACCAGCAGCTGATATCCATGGACGGGGGAATCATGAACCACACAAGGCTTTTGCACTCTGTGGTGACCGGAGCCCTGGACTCCCCTGACATCTCTGTATACTACATCAGCTCGTGGCCTATAGGGCCATTCAGAACCGCTTCATCTATGCTGATTGGTTCCCCTGAAACTCTGTCCTTGTCCAACATGACCACAAAACTGCACCTTCTTCTCAAACACATTGAAGAAGTCACCTCTGTGTCAGTTGAAGATATAGATGAGTGTACCTATGCCGCTCTCAGCAGCTGCTCACGTCAGGCAGACTGTGCCAACACAGAGGGCTCCTACAGCTGCACCTGTCATCCTGGATTCACTGATCTGAACCCCAACAACACTGGGGTAGACTGCCAAGCTTCTGACCTTGTGACCTCAGCCCTGCCCAGTAATGCCACTCATATGTTTTGGTGGGCCAATGCAACAGAGTTGCCACCCAGCAGCACCAGTTATCAGTCCTGGGACTCCAGCTTTATTGATAACCCAGCAGCCGTAGCTACAACCACAGACAGGGGCATGATGCTGAGCTCCACCCATATGCCTGTTACCACACATGACCTAGCTATAGCCAGCTCCAACAGGTCTGAGACCAGACCAGCTCTCACATCCTGGAGTAGTCCCACCTCACTGCAGCAtaccactaacactaacactccTACCCtgcccctctccacctctatgCCCCAAACCAGCATGGGACCTACTGTGGAGGACATGTACCTGAGTGTATCCTCACTATCACCATCCACATGCCaCCCAACCCCCACCACCAACTTGCAGGCCTCCAACGTTACTGGCTtctctttctgcctgtcctgGACTGGCCAATCCCAGAGCGGGCTCAGCTTCCTCGTGGTGTTGAaggaggggtcagaggtcaagggACGCTGGGAGACAAAGCTGTCAGTCTGGGAGGTGACAGGGCTGCAACCTGGGGTTCTCTACAACGTCACTGTCACTCCTTGTGCCTGTGGGAACCATTGGGCCAGCCTGCTGGTGCTGGTTAAGACTGCGGCACAGACACTTCGAGCAACAGTTCGCCTGACCAACGTGCAGTTCACTGATGCCTTGCTGTACCCCACTAGCCAGGAGTATCAGAATCTCAGTCGTAGTATTGAGGAAGAGAtcctccagtctctccctccTTATATCCTGGCCCTGGTGAACTCAGGAGATGTGAGGCTTCAGATCAGAGGCCTGACTCCTGGCAGTGTAGTAGTGAacttcatcatcatcttcacaCCCAGTCAGTCCCAGGACATCCTGAAGGTGTCCTCTGCTCTGATGCAGGCCCTACAGAACAGCTCCATATACACTGTTGACAGCAACAACACCCGTATAGATGATGATGATGAGTGCAGTACAGGGGACATGGACTGCTCCCCATGGGCCCAGTGCACTAACACCTGGGGCTCCTACAGCTGTCTCTGTCTGGACGGATTCACTGACTCCAACCCCTCCAGGCCAGGACGGGGCTGTTCAGCACCTTTGACCACAACCATACCTACAATGCCCATCACGACACCTGTACAGACGACCACAGCTCCAGCTACAATCACAACCACAACCAACACTCTGGTTacaaccaacaatacagtttcaACCACTACAACCTACAATCCAACCTCAATCACATCCAACAATAAAACTACAACTACAATCAACACACAAGTTACAACCAACAATGCCGTTAGAATCAACAACACTGTTTCAACCGCTACTCCAATTCTAATCACAACCATGACCCCAGTTCCAACCACAACCACCACTGACGTTCCTACAGCAATGACCACCACTGTGACCAGCGGTCTCATCACAACGAGTCTGCAGCCTAAGACTCTTACATCTCCGGCTATTCTGGTTTCTTATATGAGGGGCATCTCTGTGGAGTGCAGGGCCAGCTATATCATCGTGACAGTTGCGAGGGACTTCCTGGAGGCGAGGCACATTGGGGACTCTTCCCTCTACCTGGGGAGACAGGAGTGTGGCGTGAACGAAGCGAACAGCAGCCATGTCCAGCTGACGGTGGCTTGGGACCAGTGTAACACACAGCTCTTATATAATAGCACTCATTACACTGCTCAGACGACTCTATTCAATTCCATGGATCTCCAGAGCCTGCCCGACAGCAAAACGAGAGTTCCTACAGTACGACTGGAGATCCCCATCATGTGTACCTTTGGGAGGAGCATCCTCATCTCTGCGGGTTATGACCCCACAGGGTATGACATGATTAAAGATGTCGTCATGGGCTCAGGGACTTTCCATGTGACGGTTCAGCTCCTGAATGGAATGTCCCCTCTCCCTCAGAACTACAGCCTATCTCCCGAGGAGGAAGTTGTGGTCGAGGTCAGCGTCAACTCCACAGTTGACCAGATCAAAGTGGTCATCAACAAGTGCTGGGCCACCCAGAGCAACAACCCTTTGGAACCAACAATTTACTTGTTCCTGGAAAACAGCTGTCCCCTCCTCAACACATACACCACAGTCTTGGAGAACGGCAACTCCAGCAAGTCTCGCCTGTCCCTTCGCATCTTCTCCTACGTCAACCTCAATGTCATCTACTTGCACTGCCAGATTCATATCTGTATTGAGACTGGCTCAGCCACCTGCCAGCCTGATTGTATTGAACGGACAGAAAGATTCTCTAATCTAATCGGAATGGGAAAAGCAACCTGTGGACCATTCCTTCGATCACACAAAGTTCCCATCAAAGAGAGTTATGTTACTCTTCGTCTGGTGGACTACGTCTTACTGGGAATAGGACTGTTCCTCCTCTTCGTCGGTAGTCTCTCGTCCTTGTTCTTCTGCTACAGGAAGCGAATTGGAACCTACAGCTTCAGCCTTAAACCCAAGCAAGAGAACTTTACCTATCATGTTTTTGATGCTTAGCACTGGAATGCTTTTAGGGTAGTTTTAGAGAACTTAAAGAGATATTAAAGTTGGGATTCAAGCTGCAATGCCTGTTGTGTAGTAGTCAGTGTAATGAAAGTtattaatatactgtagatagtttAATTGAAATAAAGATATATTATTAGAAAAGTGTATCAAAAGCCACAACTCATTATTCATTTGAATAACATCAACGTCACTTCAATTATTTCAACATTGATACATTTAAACACGTACATACCGTATACAAGGCACCATTTGCCAGATTTGTAACAGTCTATTTGTATAGGAAATTGTATTTACCAAATATATATACTACAatcactttattttatttttcacagaTGTTTTTCTATAACTGAGAAAATCTACCGTTTTTAATTATGGAAATTGCAtttattttatcagcatatcCTGAAGTCTTATTAAATCAATAGCTATCACGTCCTGGAATATTGACCTGATGAAATGTGAAATATATTAATAAAAACCATAGTAATAAAAAGGAATGAATTGTATACTGGATCATTTGTAGCAGAGGAAGAGAGTATTTCCCCAGTCGCTATTTATGAGGTGAAATACAATAAGTACTTACGTTGAATTTGTGATCCAATCTTAGAAGTACTGTAATGATCCATACACTAGAGGACACTGTTGGGTCATTTCATGAaaccact

Function

NR:

description
PREDICTED: uromodulin-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619809.2 True 4136 mRNA 0.48 17 32505369 32519387

Neighbor

gene id symbol gene type direction distance location
LOC110533659 NA coding upstream 7983 32493717 ~ 32497386 (+)
LOC110533658 LOC106603532 coding upstream 17356 32486008 ~ 32488013 (+)
LOC110533651 LOC106603524 coding upstream 276322 31744589 ~ 32229047 (+)
LOC110534886 ints2 coding upstream 1052486 31386220 ~ 31452883 (+)
LOC110534883 med13 coding upstream 1122791 31241426 ~ 31382578 (+)
LOC110533662 mog2a coding downstream 46503 32565890 ~ 32591366 (+)
LOC110533663 LOC106603538 coding downstream 80507 32599894 ~ 32635095 (+)
LOC110533664 LOC106603537 coding downstream 120183 32639570 ~ 32779932 (+)
LOC110533671 LOC106603546 coding downstream 490000 32981866 ~ 33045499 (+)
LOC110534913 LOC106603425 coding downstream 542024 33061411 ~ 33063183 (+)
G878559 NA non-coding upstream 126414 32378322 ~ 32378955 (+)
G878551 NA non-coding upstream 146268 32358192 ~ 32359101 (+)
G878483 NA non-coding upstream 259241 32245821 ~ 32246128 (+)
G878479 NA non-coding upstream 264129 32240989 ~ 32241240 (+)
G878378 NA non-coding upstream 390217 32107231 ~ 32115152 (+)
G878669 NA non-coding downstream 22805 32542192 ~ 32542721 (+)
G878720 NA non-coding downstream 263069 32782456 ~ 32782831 (+)
G878792 NA non-coding downstream 268802 32788189 ~ 32788420 (+)
G879788 NA non-coding downstream 297562 32816949 ~ 32817180 (+)
G879832 NA non-coding downstream 356858 32876245 ~ 32902669 (+)
G877809 NA other upstream 1299951 31205083 ~ 31205418 (+)
LOC110533640 LOC106603515 other upstream 1749713 30748439 ~ 30771331 (+)
G876079 ubb other upstream 2455316 30020641 ~ 30050053 (+)
LOC110533672 LOC106603547 other downstream 611758 33130843 ~ 33140211 (+)
G880069 NA other downstream 781378 33300765 ~ 33301738 (+)
LOC110533688 NA other downstream 1525107 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1915155 34422538 ~ 34435620 (+)

Expression


Co-expression Network