LOC110534913 (LOC106603425)


Basic Information

Item Value
gene id LOC110534913
gene name LOC106603425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33061411 ~ 33063183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619830.2
GcaccaggagaggaggaggagacaagggCTGTCAGGACACAGCACCCAACAACGTCCCGACTGACAGCTCTGTGAAAGACGCCGCAAAACACAGCACCCAACACCAACCTGACAGGCAGCCCCTCAGAACAAGCCACAGATCGACAGCAAAGGAGGTCCTGGCACCGCAACGACAACTTTGCGAACACTCCAGCAACTACTAAGTAGTCAGTGGCTACAGagaaactacaacaacaaccttCACCATAGCTCCACGGCCAGCCAGTGATGATGATCTGCAGAAACCTGGCAGGGTCAGAGGAGTTCTCTGAGGAGGAGCTGGAGCTGTGCATGCTGGGTCAGGGGGAGGATAACGAAGGGAGCGACGGAAACCCCAAGGGCCCCTTCAAGGACAGTGAGGGCTCAGCCAGCAGCCCCCCCAGTGACGATCCTGAGGAGGGCCAGGCCAAGAAGCGCAGCCGCCCAGTCCGCTCCAAGGCCCGCCGTGTGGCTGCCAACGTCCGTGAGCGCAAAcgcatcctggactacaaccaggCCTTCAATGCTCTACGTGTGGCTCTCAACCACGACCTTAGCGGCAAGAGGCTCTCCAAGATTTCCACCCTGCAGAGGGCCATCAACCGCATCTCagccctgtctgtcttcctcagCTCCAACCCCCCCAGTAAGCCCTGCTCCCACCGGGAGTGCCACAGGCCGGCTGGGGGGCCATTGGCGGTGGGAATGGTGAGAACGTCACGGCTGGACCCGAACAGGGTGACAGTCGCTCCTCGCCAGGAGCCCCAAAGCTACATCTCCTGGCACCAGGCATCACTCCCCCACCAGATAGAGCCCCAGCAGGGCACCCATCCTCACAGGCTGCCAACAGAGACACACCTCTACATGGACAGCATGGGCTCCTCGTGTCCACCCTCACCACACTACCCCTGCTACTCCACCGAGGGCCAGTTGTACCCCTTACACGGACACTGTGGGAAAGGGAACCCCTTGGAGCAGCTGCCCAGCTCTATCAGGTACACCCAGGTGGGCGAGGGGCTGGGGTACCAGCCGGGGGTGTGGGCCTCCTGCGCTCAGGGCTACATGGATGCATTTGTGGACCCGTCACCAGCCTTGGGCCTCCCCTGGCAGGTGAGCTACCTCCAGGAGACAGCAAGCCCCCAGCACAACCTGTCCCTGCTCTGACACTTGGACCAGACACGTTAGAGCCTAGCTATGCACCACTATGACCCCTGAAGCCTGGAGAATAGACCAGCCAACTGTCCAAATGATCTCAGGGAAAAATAAGAAAAAGTGAGCTTCATGTGCTCTCACTGTTGCAATGGATTCAGTATTACAGTGCTACTCTCTAAAGTAGAGCAGAGTCACTGATTTAAATGTGTTATCTAACAATGTAAATATGATTGTCATATCTTGAATGCAACGGCAATGTACATTTCAGCATGTTTTAAACACGACCATTCAAACCTTGTTTTCTATTTCAAATTATAAAGCCAATTAATGTTATTCTTATAGATGGAAAAGTTTCAACTGCTCAAAACACACACTTCACTTCACGTCCAAAGTGTTGAGTGTCTGGCAATATAGCCGCAATCCTCTTTACAAACCCAAAGAACAAACTTATTTGAGTTTTCTATATTTCATTATTGTACTCATGTACAGGTATATGGATGCTACAGTTTGTGAACTAAAGTTTTGAAACTTGTtaataaaacatttgttttaaataCGACTTACGAGTGAgtaggtgttctgtctgtctttgCAGAGAGTCTG

Function

NR:

description
class A basic helix-loop-helix protein 9-like

GO: NA

KEGG:

id description
K24145 BHLHA9; class A basic helix-loop-helix protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619830.2 True 1773 mRNA 0.53 1 33061411 33063183

Neighbor

gene id symbol gene type direction distance location
LOC110533671 LOC106603546 coding upstream 20397 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 281479 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 426316 32599894 ~ 32635095 (+)
LOC110533662 mog2a coding upstream 470045 32565890 ~ 32591366 (+)
LOC110534887 LOC106603535 coding upstream 542024 32505369 ~ 32519387 (+)
LOC110533672 LOC106603547 coding downstream 67660 33130843 ~ 33140211 (+)
samsn1b LOC106603553 coding downstream 405181 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 490125 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 505254 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 512226 33575409 ~ 33593092 (+)
G879914 NA non-coding upstream 8353 33052817 ~ 33053058 (+)
G879844 LOC106603544 non-coding upstream 70598 32983645 ~ 32990813 (+)
G879853 NA non-coding upstream 98798 32960875 ~ 32962613 (+)
G879879 NA non-coding upstream 109102 32952039 ~ 32952309 (+)
G880032 NA non-coding downstream 191492 33254675 ~ 33255017 (+)
G880068 LOC106603551 non-coding downstream 234031 33297214 ~ 33298232 (+)
G880080 NA non-coding downstream 260789 33323972 ~ 33324235 (+)
G880091 NA non-coding downstream 286397 33349580 ~ 33349805 (+)
G880092 NA non-coding downstream 286631 33349814 ~ 33350044 (+)
LOC110534883 med13 other upstream 1738811 31241426 ~ 31382578 (+)
G877809 NA other upstream 1855993 31205083 ~ 31205418 (+)
LOC110533640 LOC106603515 other upstream 2305755 30748439 ~ 30771331 (+)
G876079 ubb other upstream 3011358 30020641 ~ 30050053 (+)
G880069 NA other downstream 237582 33300765 ~ 33301738 (+)
LOC110533688 NA other downstream 981311 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1371359 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1374157 34437126 ~ 34443357 (+)

Expression


Co-expression Network