LOC100136017 (mmp13)


Basic Information

Item Value
gene id LOC100136017
gene name mmp13
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33616384 ~ 33621122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618131.2
TCTCCTGGCCACAAACCACACAAAGAAGACACTCTTGAGGAAGAAGCATCATGAAGACTTTCAATCTGTGCTTACTACTAATCAACCTGGCAATAGTGGTTCACTCTTTGCCAATCTCGCCACCTAGTGAAGAAGATGAAGCCCTTGCAGAGACGTACCTGAAGAGGTTTTTTAACCTGACAGAGGAGACGGGTCCTGCGTTCAAACGGGGGCCCAGCCAGCGGAGCAGGAAGGTCAGCGAGATGCAAAGTTTCTTTGGCCTCAAGGTGACAGGAACCTTGGACGCTGAGACTGTGACGATGATGAAGAAGCCACGCTGTGGGGTACCTGATGTCCAACTCAGCCGCTTCACCACCTTCGACAATCGCAAGTGGCAGACCAACCAGGTTACCTACAGGATTGAGAACTACACCCCTGACATGACTGTGGCTGAGGTGGACAACTCCATAGAGAGAGCACTGCAGGTGTGGGCCAAGGTCTCCCCCCTGAGGTTTACCCGCATCTACAGTGGCATCGCTGACATCATGATCTCATTCGGCACCAGAAATCATGGTGATTCTTACCCCTTCGATGGCCCTGATGGCACCCTGGCCCATGCCTTCTCCCCCGGTGCTGACATTGGAGGAGATGCTCATTTTGACGATGACGAGTCCTTCAGCTTCAGCTCAACCAGAGGGTACAACCTGTTCTTGGTGGCTGCCCATGAGTTTGGCCATTCCCTCGGTCTCAGCCACTCCACCGACCCTGGAGCACTGATGtacccagtgtacagctacacaGACCCCAGCACCTTCTCTCTGCCCCGCGATGACGTCAACGGTATCCAGCACATCTATGGTCCAAACACAGATGTGAACCCCAAACCAGACAAGCCAGATCCTACACCCCCTTCCACCCCTAATGCCTGTGACCCCACCCTAGTTTTGGATGCTGTCACCACTCTACGTGGGGAGAAGATGTTCTTCAAGGGCAGGTTCTTCTGGCGTAGCTACTCTCAGAGCAGCAAACCACAACAGAGCCTCATCAAGAACTACTGGCCCGAACTCCCCGACAACATCAATGCTGCTTACGAGAGCCAGCTATCTGACAGAGTGTTCCTCTTCAAAGATAGTCAGGTCTGGGCTCTCTACGGATATGACATCGTCCCCGGTTATCCCAGAAACCTGAAGAGCTTGGGCCTGCCCAGTACCGTGAATAAAGTTGACGCCGCCCTGTACGATGAAGATTCTCGCAAGACCTTGTTCTTCGTTGATGACAACTACTACAGTTACGACGAGGCAATGAAAAGGATGGACAAAGGTTTCCCCAAGCGTGTGGATGAAGGGTTCCCAGGCATGACAAGCAAAGTGACTGCAGCCTTCCAAGTCCGAGGCTTTACCTACCTCTATAGTGGCTCCTATATGTTTGAGTACAGCATGAGGACCAGGAGACAGTTACGCGTGCTAAGAAACAACTACTTCCTGCCCTGTTAGAACATCAACACTCATGAGCCGTTTAAAGTAGTAGCCATGAACAACAATGAATGCagccaaatatttttttataatatataatatagttGTTGTAACTTTGAGATTTTAAAGATTTGTTTTCTAATAAATATTTTTGTCACATGTCTATTTAAATATCTATTCATGCATCTCAATTATTTGATATGTTTCTTGATTAAATTGTAACCTAAATAATCTGAAAACATGAATGTATTGAATGAAGGCCAAACAAGTTTTTACACTTGTCATATTCAAATAAATTCCAAGTTATTGAGA

Function

symbol description
mmp13 Enables collagen binding activity; metal ion binding activity; and metalloendopeptidase activity. Involved in bone morphogenesis; collagen catabolic process; and extracellular matrix disassembly. Predicted to be located in extracellular space. Predicted to be part of collagen trimer. Implicated in anodontia; artery disease (multiple); osteoarthritis; ovarian carcinoma; and spondyloepimetaphyseal dysplasia, Missouri type. Biomarker of invasive ductal carcinoma; reproductive organ cancer (multiple); and urinary bladder cancer.

NR:

description
collagenase 3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005581 collagen trimer cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618131.2 True 1766 mRNA 0.48 10 33616384 33621122

Neighbor

gene id symbol gene type direction distance location
acer3 LOC106603557 coding upstream 23292 33575409 ~ 33593092 (+)
LOC110533682 NA coding upstream 47154 33568437 ~ 33569230 (+)
serpinh1a serph coding upstream 58470 33553308 ~ 33557914 (+)
samsn1b LOC106603553 coding upstream 124629 33468364 ~ 33492333 (+)
LOC110533672 LOC106603547 coding upstream 476173 33130843 ~ 33140211 (+)
acat1 acat1 coding downstream 9362 33630484 ~ 33647312 (+)
tmprss2 tmps2 coding downstream 43997 33665119 ~ 33678850 (+)
LOC118936922 NA coding downstream 79450 33700572 ~ 33702711 (+)
dscama LOC105030490 coding downstream 109143 33730265 ~ 33913890 (+)
LOC110533688 NA coding downstream 423350 34044472 ~ 34047724 (+)
G880234 NA non-coding upstream 53534 33530649 ~ 33562850 (+)
G880152 NA non-coding upstream 202448 33413696 ~ 33413936 (+)
G880151 NA non-coding upstream 202781 33413327 ~ 33413603 (+)
G880148 NA non-coding upstream 206567 33409560 ~ 33409817 (+)
G880338 NA non-coding downstream 86542 33707664 ~ 33707872 (+)
G880339 NA non-coding downstream 87973 33709095 ~ 33737521 (+)
G880373 NA non-coding downstream 137426 33758548 ~ 33759801 (+)
G880468 NA non-coding downstream 318313 33939435 ~ 33973224 (+)
G880069 NA other upstream 314646 33300765 ~ 33301738 (+)
LOC110533671 LOC106603546 other upstream 570885 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 2293784 31241426 ~ 31382578 (+)
G877809 NA other upstream 2410966 31205083 ~ 31205418 (+)
hsd20b2 LOC106603577 other downstream 813420 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 816218 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 837672 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 865698 34486712 ~ 34488757 (+)

Expression


Co-expression Network