LOC110533688


Basic Information

Item Value
gene id LOC110533688
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34044472 ~ 34047724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618137.2
AATGAATTcaatagggagggagggggagaatcCAATCCGGTTTGAGCTAGTTTTTGTTCCAATGGAACATTAAGGTTTGCTACGCTGTAATAGAACGTAGTGTTTGAATCTTATACCAACATACAGTATTTTTCTTGCTCCGTTTTGGAACAGTTTCCTCTTTATTTGAACTTATACGCAAAACAGCCATGCCTAAAAGGAGCAAAgcaAACGCTGATGTTGAGGCAGCAGAGCCTAAGAGGAGATCTGAGAGATTGGTAAATAAACCTGCAATTGCAAAGGCAGAGCCCAAGCCAAAGAAGGAGAAGGCAGCACCTAAGCCCAAGAAGGCTAAAGAGGTGAAAAAGACCGAGCCTGAGAAGGAGGTGCCCGCAGAGAATGGAGAAGCCAAAGCTGAGGAGGAGGCACCAGAAGAACCTgaacagaaagaggaggaagaggcggCAGAATAACATCTCTCAAACCACATCTTTTATCAGTGCTCCCTGTACCTCTTTTTCTTGTACAATTCAGGGGTATATTTTTATCGACTATTTTCTAAATGCAGGTTTTTTAGTAGTTTGATTGTAGAAACACATTTTtttatgaaataaaaaatacaatttgagaTGGGGATTTCATTGCATCCCATGTTTTTACATCTCTGGAACAATTACGGTCATTGTAAATGTCAACGGTTTTTATTTTCGATATGGGGGAGGGGTGGGAATGGGACAGGTTACTACACCAAGAACATGCAAGCACGTCGTTTACAGGATCCGGTCAAAACAACAGAGAGCTTGTCTGAGAGACTAACATTCCATAGGCTATATGAGGGAAGGTATACGTAACCTGCATTGTGTGGTGGGGATGAATTAACTCAAGGGGGAACACATTGTTTTATTGTTTataatgaggaaaacattttaaGATGTTTAAACTGTGTTCCATATGTTAACTCTTGTACTCATTATGTTTTTCTTTACCATTCTGCTTAATAAACCTATTCCCTAGTACTGGAGTTCCTCCCTATCAGGCCTGTGCATTGGGTGTAATTGGTTGTCTCTGTTCTGTGATAGCATTGCAATAAATTTGTATAGCTGCTATTAAAAGGGGTTTTCAACTTTCTATATGCAGTGTGTAATGGTACATTGTGAGTATGGTAAAAATGGAATTGTGTTCTTAGCCAAGCTAAAGAAGTACATAAGTTAAATATACTGACTATTATGGTTCCTTGGATGCTGAGAAACTACATCCATTTGAGCTGTCAAATACACAAACCAGCAGTAGCAATATTCATGTGGGGTTTAGGTATCAAGTACAAGTGTACAGTTCTTTTATTCTTTGTTTATAGATGTATCTGTGTAATGATTGGTATAAACAAACCAATAAAAATTTGGTTGTA
>TU1001972
ggggagaatcCAATCCGGTTTGAGCTAGTTTTTGTTCCAATGGAACATTAAGGTTTGCTACGCTGTAATAGAACGTAGTGTTTGAATCTTATACCAACATACAGTATTTTTCTTGCTCCGTTTTGGAACAGTTTCCTCTTTATTTGAACTTATACGCAAAACAGCCATGCCTAAAAGGAGCAAAgcaAACGCTGATGTTGAGGCAGCAGAGCCTAAGAGGAGATCTGAGAGATTGGTAAATAAACCTGCAATTGCAAAGGCAGAGCCCAAGCCAAAGAAGGAGAAGGCAGCACCTAAGCCCAAGAAGGCTAAAGAGGTGAAAAAGACCGAGCCTGAGAAGGAGGTGCCCGCAGAGAATGGAGAAGCCAAAGCTGAGGAGGAGGCACCAGAAGAACCTgaacagaaagaggaggaagaggcggCAGAATAACATCTCTCAAACCACATCTTTTATCAGTGCTCCCTGTACCTCTTTTTCTTGTACAATTCAGGGGTATATTTTTATCGACTATTTTCTAAATGCAGGTTTTTTAGTAGTTTGATTGTAGAAACACATTTTtttatgaaataaaaaatacaatttgagaTGGGGATTTCATTGCATCCCATGTTTTTACATCTCTGGAACAATTACGGTCATTGTAAATGTCAACGGTTTTTATTTTCGATATGGGGGAGGGGTGGGAATGGGACAGGTTACTACACCAAGAACATGCAAGCACGTCGTTTACAGGATCCGGTCAAAACAACAGAGAGCTTGTCTGAGAGACTAACATTCCATAGGCTATATGAGGGAAGGTATACGTAACCTGCATTGTGTGGTGGGGATGAATTAACTCAAGGGGGAACACATTGTTTTATTGTTTataatgaggaaaacattttaaGATGTTTAAACTGTGTTCCATATGTTAACTCTTGTACTCATTATGTTTTTCTTTACCATTCTGCTTAATAAACCTATTCCCTAGTACTGGAGTTCCTCCCTATCAGGCCTGTGCATTGGGTGTAATTGGTTGTCTCTGTTCTGTGATAGCATTGCAATAAATTTGTATAGCTGCTATTAAAAGGGGTTTTCAACTTTCTATATGCAGTGTGTAATGGTACATTGTGAGTATGGTAAAAATGGAATTGTGTTCTTAGCCAAGCTAAAGAAGTACATAAGTTAAATATACTGACTATTATGGTTCCTTGGATGCTGAGAAACTACATCCATTTGAGCTGTCAAATACACAAACCAGCAGTAGCAATATTCATGTGGGGTTTAGGTATCAAGTACAAGTGTACAGTTCTTTTATTCTTTGTTTATAGATGTATCTGTGTAATGATTGGTA
>TU1001973
ggggagaatcCAATCCGGTTTGAGCTAGTTTTTGTTCCAATGGAACATTAAGGTTTGCTACGCTGTAATAGAACGTAGTGTTTGAATCTTATACCAACATACAGTATTTTTCTTGCTCCGTTTTGGAACAGTTTCCTCTTTATTTGAACTTATACGCAAAACAGCCATGCCTAAAAGGAGCAAAgcaAACGCTGATGTTGAGGCAGCAGAGCCTAAGAGGAGATCTGAGAGATTGGTAAATAAACCTGCAATTGCAAAGGCAGAGCCCAAGCCAAAGAAGGAGAAGGCAGCACCTAAGCCCAAGAAGGCTAAAGAGGTGAAAAAGACCGAGCCTGAGAAGGAGGTGCCCGCAGAGAATGGAGAAGCCAAAGCTGAGGAGGAGGCACCAGAAGAACCTgaacagaaagaggaggaagaggcggCAGAATAACATCTCTCAAACCACATCTTTTATCAGTGCTCCCTGTACCTCTTTTTCTTGTACAATTCAGGGGTATATTTTTATCGACTATTTTCTAAATGCAGGTTTTTTAGTAGTTTGATTGTAGAAACACATTTTtttatgaaataaaaaatacaatttgagaTGGGGATTTCATTGCATCCCATGTTTTTACATCTCTGGAACAATTACGGTCATTGTAAATGTCAACGGTTTTTATTTTCGATATGGGGGAGGGGTGGGAATGGGACAGGTTACTACACCAAGAACATGCAAGCACGTCGTTTACAGGATCCGGTCAAAACAACAGAGAGCTTGTCTGAGAGACTAACATTCCATAGGCTATATGAGGGAAGGTATACGTAACCTGCATTGTGTGGTGGGGATGAATTAACTCAAGGGGGAACACATTGTTTTATTGTTTataatgaggaaaacattttaaGATGTTTAAACTGTGTTCCATATGTTAACTCTTGTACTCATTATGTTTTTCTTTACCATTCTGCTTAATAAACCTATTCCCTAGTACTGGAGTTCCTCCCTATCAGGCCTGTGCATTGGGTGTAATTGGTTGTCTCTGTTCTGTGATAGCATTGCAATAAATTTGTATAGCTGCTATTAAAAGGGGTTTTCAACTTTCTATATGCAGTGTGTAATGGTACATTGTGAGTATGGTAAAAATGGAATTGTGTTCTTAGCCAAGCTAAAGAAGTACATAAGTTAAATATACTGACTATTATGGTTCCTTGGATGCTGAGAAACTACATCCATTTGAGCTGTCAAATACACAAACCAGCAGTAGCAATATTCATGTGGGGTTTAGGTATCAAGTACAAGTGTACAGTTCTTTTATTCTTTGTTTATAGATGTATCTGTGTAATGATTGGTATAAACAAACCAATAAAAATTTGGTTGTACTTGTTTTGTTCTTTGTG

Function

NR:

description
non-histone chromosomal protein HMG-14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618137.2 False 1384 mRNA 0.39 6 34044472 34047706
TU1001972 False 1334 TUCP 0.39 6 34044494 34047678
TU1001973 True 1380 TUCP 0.39 6 34044494 34047724

Neighbor

gene id symbol gene type direction distance location
dscama LOC105030490 coding upstream 131056 33730265 ~ 33913890 (+)
LOC118936922 NA coding upstream 341761 33700572 ~ 33702711 (+)
tmprss2 tmps2 coding upstream 365622 33665119 ~ 33678850 (+)
acat1 acat1 coding upstream 397160 33630484 ~ 33647312 (+)
LOC100136017 mmp13 coding upstream 423350 33616384 ~ 33621122 (+)
LOC110533689 NA coding downstream 42031 34089737 ~ 34120835 (+)
LOC110533691 LOC106603565 coding downstream 75015 34122721 ~ 34141656 (+)
LOC110533692 LOC106603566 coding downstream 134306 34182012 ~ 34184477 (+)
LOC110534890 LOC106603566 coding downstream 162098 34209804 ~ 34211775 (+)
LOC110533694 LOC106603569 coding downstream 251687 34299393 ~ 34322532 (+)
G880497 NA non-coding upstream 57814 33986457 ~ 33986658 (+)
G880468 NA non-coding upstream 71248 33939435 ~ 33973224 (+)
G880373 NA non-coding upstream 284671 33758548 ~ 33759801 (+)
G880339 NA non-coding upstream 306951 33709095 ~ 33737521 (+)
G880556 NA non-coding downstream 33408 34081114 ~ 34081326 (+)
G880558 NA non-coding downstream 35354 34083060 ~ 34083400 (+)
G880559 NA non-coding downstream 37850 34085556 ~ 34085979 (+)
G880560 NA non-coding downstream 39155 34086861 ~ 34087082 (+)
G881377 NA non-coding downstream 141223 34188929 ~ 34189163 (+)
G880069 NA other upstream 742734 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 909558 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 998973 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 2721872 31241426 ~ 31382578 (+)
G877809 NA other upstream 2839054 31205083 ~ 31205418 (+)
hsd20b2 LOC106603577 other downstream 386836 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 389634 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 411088 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 439114 34486712 ~ 34488757 (+)
G881536 NA other downstream 442114 34489820 ~ 34494101 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002346 NA non-coding NC_007121.7 CM002894.2 39084012 ~ 39087853 (+)