Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110533689 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 34089737 ~ 34120835 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| nuclear pore complex protein Nup98-Nup96-like isoform X7 |
| id | description |
|---|---|
| K14297 | NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036990097.1 | False | 6722 | mRNA | 0.55 | 33 | 34089737 | 34120835 |
| XM_021618138.2 | False | 6979 | mRNA | 0.55 | 33 | 34089928 | 34120835 |
| XM_021618139.2 | False | 6976 | mRNA | 0.55 | 33 | 34089928 | 34120835 |
| XM_021618140.2 | False | 6976 | mRNA | 0.55 | 33 | 34089928 | 34120835 |
| XM_021618143.2 | False | 6931 | mRNA | 0.55 | 32 | 34089928 | 34120835 |
| XM_021618144.2 | True | 6928 | mRNA | 0.55 | 32 | 34089928 | 34120835 |
34,084,000
34,088,000
34,092,000
34,096,000
34,100,000
34,104,000
34,108,000
34,112,000
34,116,000
34,120,000
34,124,000
34,128,000
34,132,000
34,136,000
34,140,000
34,144,000
34,148,000
34,152,000
NC_048574.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110533688 | NA | coding | upstream | 42031 | 34044472 ~ 34047724 (+) |
| dscama | LOC105030490 | coding | upstream | 176321 | 33730265 ~ 33913890 (+) |
| LOC118936922 | NA | coding | upstream | 387026 | 33700572 ~ 33702711 (+) |
| tmprss2 | tmps2 | coding | upstream | 410887 | 33665119 ~ 33678850 (+) |
| acat1 | acat1 | coding | upstream | 442425 | 33630484 ~ 33647312 (+) |
| LOC110533691 | LOC106603565 | coding | downstream | 1886 | 34122721 ~ 34141656 (+) |
| LOC110533692 | LOC106603566 | coding | downstream | 61177 | 34182012 ~ 34184477 (+) |
| LOC110534890 | LOC106603566 | coding | downstream | 88969 | 34209804 ~ 34211775 (+) |
| LOC110533694 | LOC106603569 | coding | downstream | 178558 | 34299393 ~ 34322532 (+) |
| LOC110533696 | slc13a5 | coding | downstream | 245217 | 34366052 ~ 34377940 (+) |
| G880560 | NA | non-coding | upstream | 2655 | 34086861 ~ 34087082 (+) |
| G880559 | NA | non-coding | upstream | 3758 | 34085556 ~ 34085979 (+) |
| G880558 | NA | non-coding | upstream | 6337 | 34083060 ~ 34083400 (+) |
| G880556 | NA | non-coding | upstream | 8411 | 34081114 ~ 34081326 (+) |
| G880497 | NA | non-coding | upstream | 103079 | 33986457 ~ 33986658 (+) |
| G881377 | NA | non-coding | downstream | 68094 | 34188929 ~ 34189163 (+) |
| G881379 | NA | non-coding | downstream | 69097 | 34189932 ~ 34190181 (+) |
| G881409 | NA | non-coding | downstream | 91454 | 34212289 ~ 34212568 (+) |
| G881449 | NA | non-coding | downstream | 147033 | 34267868 ~ 34268370 (+) |
| G881480 | NA | non-coding | downstream | 202111 | 34322946 ~ 34328278 (+) |
| G880069 | NA | other | upstream | 787999 | 33300765 ~ 33301738 (+) |
| LOC110533672 | LOC106603547 | other | upstream | 954823 | 33130843 ~ 33140211 (+) |
| LOC110533671 | LOC106603546 | other | upstream | 1044238 | 32981866 ~ 33045499 (+) |
| LOC110534883 | med13 | other | upstream | 2767137 | 31241426 ~ 31382578 (+) |
| hsd20b2 | LOC106603577 | other | downstream | 313707 | 34422538 ~ 34435620 (+) |
| LOC110533705 | LOC106603578 | other | downstream | 316505 | 34437126 ~ 34443357 (+) |
| rnasekb | rnasek | other | downstream | 337959 | 34458769 ~ 34472268 (+) |
| LOC110534915 | rps17 | other | downstream | 365985 | 34486712 ~ 34488757 (+) |
| G881536 | NA | other | downstream | 368985 | 34489820 ~ 34494101 (+) |
