LOC110533691 (LOC106603565)


Basic Information

Item Value
gene id LOC110533691
gene name LOC106603565
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34122721 ~ 34141656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618146.2
CCAAAACCAGCTCTGTGCGCAGCTGTCTCTTCGCAGCGCGTTTCAGGCCTACGCTGAACTCCCCAAATACGGTAAATTCTCTCAGCTGTAGGGGGCTATTTTGCTCTTCTGCCCGCTGTGTCAAACAACTCGGCATATTGTGCCAGTTCAGCACCATGCATCTATGGAGAGTCTTTTCTACGTGGCTATTCTTCCTCTGTTTTAGTTTTCTTCCAGtgtGTCTGGGTGCTCATGGGAGATATGCTCAGAAGTTGTTGACTGATTTGTTCGCTAACTACACCAACGCTCTGAGACCGGTAGAGGACACAGACCACATCATTAACGTCACACTGCAGATCACCCTCTCACAGATCATTGACatgGATGAGCGGAACCAGATCCTGACCACGTACCTGTGGATCCGGATGGTGTGGACGGACGCCTACCTCACTTGGAAGAAGGAGGACTACGATGGTCTCGATACCATCCGCATACCTAGTAGTTATGTATGGAGGCCTGATATTGTCCTATATAACAAtgctgATGACCAGTTCTCCAGCTCTATGGAGACCAACGTGGTGATCCGTAACGACGGACAGATCATGTGGGACCAGCCGGCCATCAGTAAGAGCTCGTGCTCCGTGGATGTGTCCTTCTTCCCATTTGATGCCCAGCAGTGTCGCCTAACCTTCGGCTCCTGGACACACAACGGCAACCAGATGGACCTGGTCAACGCCCTAGACAGCGCTGACCTGGCCGACTTTGTGGCCAACGTAGAGTGGGAGGTTCTGGGTATGCCAGCCAAGAAGAACGTGATCCTGTATGGCTGTTGCTCAGACCCCTACCCAGACATCACCTACACCCTGCACCTGAAACGCAGGGCCTCCTTCTACATCTTCAACCTACTCATCCCCTGCATGATGATCTCCTTCCTGGCCCCGCTGGGCTTCTACCTGCCGGCTGACTCTGGGGAGAAAGTGTCCCTGGGGGTCACTGTGCTGCTGGCCCTGACCGTGTTCCAGCTGCTGGTGGCAGAGAGCATGCCACCCTCGGAGAACGTACCACTCATAGGGAAGTACTACATTGCTACCATGACGATGATCACCGCATCGACCGCCCTGACTATCTTCATCATGAATATCCATCACTGTGGTCCGGAGGCGCGTCCCGTCCCTGAATGGGCCCGCCGCTTCATCCTGCACTACCTGGCACGGATCTGCTTCGTCTTCGAGGTGGGAGAGAACTGCTTCACTGGAACCCCCAAGAAACAGGCCCCGCCTGAGCCCCCACCCGACCACAATATCAACCCCCTAACTAGAGGTACTAACTGGGATGTGAACGGGCAGGCCTGGGGGGGCATGGAAGGGAGGGGTGAAGAGGAAGTGGGAGGGGTGGGCATAAAGACTccggaagagaaagaggaggggaataGACTGGATGTGAAGAAAGGGTCATACCAAATGTTTGAGCCCAGTAGGTGGAAAGACGACCTGTTTGTAAGTATAGatgcagaagaggaggaggagggagcagcaggaagggagaagggagaaggaggagaggcagaaagagagaattGTTTCAGAGGAAAAATTGGGTGCATGGGAGGGGCAGAGGAAAAAAAAGgcaaaggtggaggaggaggagagagaggctgtgtggaAGGAGGAGGTGAAAGAAGGAAAGGATCATTAGGAGGTGCAGAGGATAGGGGTaggagggaggtggtggtgagcgtccagtgtgtgtgtcagcaccAGGCGCTCCGCAGGAACATAGAGTACATCGCCAGCTGCTATCATGACCAGCGTTCCACTCAGAGACGTACGGGTGAGTGGAGGAAGGTGGCCAAGGTCATGGACCGACTCTTCATGTGGCTCTTCTTTATCATGGTCTTCCTCATGAGCCTCCTCATTATGGGCAAGGCCGTCTGAGCAcgtgcagagagcagagggagaagaCTCCAGGTACAAGTGACCCTCAGgcacagatctaagatcagatccTACCCTTCCCAAATGCTGACCTTAACCATTAAGGAGGATCccaaactgaccttagatcagtgtctaatGGTAACTTTATCCTACTCCGAGGGGCATTAGGCCAACTAAACCATTCAGTGTTTACCACTGGAGATACTGTGTGTGGGGTTTTGTACGTACTGTATACTAGCTGTTAATATTCAGCAATGTGAGGTAGACTTAATTGATCTCATTTCATACAGAAGTAGTTTTCTGTGAGTCTAAAGTGTTTGTAGGGGAGACAGGAACAAACTTCATCTGTGAAATGGAGCCAAAGTAATTCTTCTGCCACCTGGCGACTATTATAAACACACAGTTTAACAAGTCCACATTTTTATATTACTATAACCTTTAACGCTCTTCGTCCTTTTACTGATTTACTGTATGTGAATAATCCATTAGACAATTGTATTTTTAAGTGTACTTCTCAGGCCTGCCTGTCACTATATGAGAACGACAGTACTTTATGAGTGCACACCTGAGAAGTGCACACTTTCTTTGAGTGCACTTGACGCTGTTGAAGATTTGATGTGTAGATATAGTATAGAATGACAATGCTAAAATAATAGTAGTGGTCCATGCTTAAGAAGACTAATGTATCCAATGCTTATCACTTGTCTTGTACCATAAACAATATTACATATGTACAAGTACGccattaaatgtattaaatatttcaTAATATCCAAA

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-10-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618146.2 True 2693 mRNA 0.50 6 34122721 34141656

Neighbor

gene id symbol gene type direction distance location
LOC110533689 NA coding upstream 1886 34089737 ~ 34120835 (+)
LOC110533688 NA coding upstream 75015 34044472 ~ 34047724 (+)
dscama LOC105030490 coding upstream 209305 33730265 ~ 33913890 (+)
LOC118936922 NA coding upstream 420010 33700572 ~ 33702711 (+)
tmprss2 tmps2 coding upstream 443871 33665119 ~ 33678850 (+)
LOC110533692 LOC106603566 coding downstream 40356 34182012 ~ 34184477 (+)
LOC110534890 LOC106603566 coding downstream 68148 34209804 ~ 34211775 (+)
LOC110533694 LOC106603569 coding downstream 157737 34299393 ~ 34322532 (+)
LOC110533696 slc13a5 coding downstream 224396 34366052 ~ 34377940 (+)
med31 med31 coding downstream 238579 34380235 ~ 34387056 (+)
G880560 NA non-coding upstream 35639 34086861 ~ 34087082 (+)
G880559 NA non-coding upstream 36742 34085556 ~ 34085979 (+)
G880558 NA non-coding upstream 39321 34083060 ~ 34083400 (+)
G880556 NA non-coding upstream 41395 34081114 ~ 34081326 (+)
G880497 NA non-coding upstream 136063 33986457 ~ 33986658 (+)
G881377 NA non-coding downstream 47273 34188929 ~ 34189163 (+)
G881379 NA non-coding downstream 48276 34189932 ~ 34190181 (+)
G881409 NA non-coding downstream 70633 34212289 ~ 34212568 (+)
G881449 NA non-coding downstream 126212 34267868 ~ 34268370 (+)
G881480 NA non-coding downstream 181290 34322946 ~ 34328278 (+)
G880069 NA other upstream 820983 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 987807 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 1077222 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 2800121 31241426 ~ 31382578 (+)
hsd20b2 LOC106603577 other downstream 292886 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 295684 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 317138 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 345164 34486712 ~ 34488757 (+)
G881536 NA other downstream 348164 34489820 ~ 34494101 (+)

Expression


Co-expression Network