LOC110533692 (LOC106603566)


Basic Information

Item Value
gene id LOC110533692
gene name LOC106603566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34182012 ~ 34184477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618147.2
ATGAACAGCACCCAGTCCAGCCCTGTCGCCTTCTTCATCATCCAGGGCCTGGCCAGTCTGGGGGAGAAGAAGATGGTCCTGTTTATCATCTTCCTGCTGGCCTACACCGTCATCCtaggtggaaacatcatgatcATCTACCTGGTCCGGACCGACCCGAAGCTGGGCTCCCCCATGTACTTCTTCCTCCACAACCTGTCTATCGTGGACATGATTTACACAACGGTCACCATCCCCAACATGTTGTCAGGCTTCCTGACTGAGGTCAAGACTGTGTCCGTCCCCGGCTGCTTCCTCCAGATGTACTGTTTCATCCACATGTCTGTTACCGGCCGCGCCCTGCTGACCGCTATGGCCTACGACCGCTATGTGGCCATCTGTAATCCTCTCCGCTATGCCGCTGTGATGACCCGCCCCGTCTGCCTGCTACTCATCATTGGGGCATGGACCTTCGGTGCCATCTGCACCTTCCCAAACACTAGCATGGCAGTACAGCGTTCATACTGTGGACCCAACGTGGTGCGCCACTGCTGGTGTGACCCGTCCTCAGTGAGGCTGCTGGTGTGTGGGGACACTCAGGTGGACAGCATCGTGTCACTGTCTTTTGCCCTCATAGCGCTGCTCACCACGGGTGTGCTCATCCTCACTTCCTACATACTCATCGGTGTGAAGATAGCTAAAATGGGCGCCGCAGAGCGACTGAAGGCGTTTAGCACCTGTGCCGCCCACCTGACGGTTGTGTCCATTTCTTACAGCTCTGCCTCATTTGTCTATATCTCCTACCGTGTGGGAAACTTCTCTCCAGAGGTGCGTATCATCGTGTCGGTGCTGTACTCGGCTCTGACTCCTTTCCTGAACCCGATGATCTACAGCCTGAGGAACAAGGAGCTGAGAGTGGCCATCAAGAGGGCCTTCTGCCGACACAGACGTCTCACCGCAGAGCCGCAAAACACTCAACACACTGTCCTGACAGCAAAACATTCAATTCAAGCTCCTTTAAAATAGTTTAGTATGGGCTACAAAGTGTGATAATTTTCAAAGATTCCAAAATTATTCCAATTATTGTTTGTTGTTTGGAAAGCAGAACAGCTAAATGTTTCATTATCATGCACTTATAAACGAAACCGAACAATATTTGTGTTTACCATTTGGTTTATTGTGTGGGTTGCACAACTGTATACATCTGATTTAATAGTTTTAAGTTTATTGATAAAAACGAAATAACAACTGTAAAGTCCTGTTCAATTGCATTGTACAAACTACCAGATACAGTACTAAATGGTATGTGATTATACTTGTTTTTAATCAATACCAAAGAAACAACAGTAATTGTTAGGAGATTATTGTGTAATTACAATCTCGCAATATTATTCCTAAATATCAGAGAAATAGCACCCTGTCAAATAAAGTGTACCAACAAATTTTGGTTTTGTGCCTCTGCCTTCTCTGTAAGCGTCACAAATTAAAATAAAAC

Function

NR:

description
olfactory receptor 1052-like

GO: NA

KEGG:

id description
K04257 OLFR; olfactory receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618147.2 True 1474 mRNA 0.47 3 34182012 34184477

Neighbor

gene id symbol gene type direction distance location
LOC110533691 LOC106603565 coding upstream 40356 34122721 ~ 34141656 (+)
LOC110533689 NA coding upstream 61177 34089737 ~ 34120835 (+)
LOC110533688 NA coding upstream 134306 34044472 ~ 34047724 (+)
dscama LOC105030490 coding upstream 268596 33730265 ~ 33913890 (+)
LOC118936922 NA coding upstream 479301 33700572 ~ 33702711 (+)
LOC110534890 LOC106603566 coding downstream 25327 34209804 ~ 34211775 (+)
LOC110533694 LOC106603569 coding downstream 114916 34299393 ~ 34322532 (+)
LOC110533696 slc13a5 coding downstream 181575 34366052 ~ 34377940 (+)
med31 med31 coding downstream 195758 34380235 ~ 34387056 (+)
LOC110533700 LOC106603575 coding downstream 203265 34387742 ~ 34391447 (+)
G880560 NA non-coding upstream 94930 34086861 ~ 34087082 (+)
G880559 NA non-coding upstream 96033 34085556 ~ 34085979 (+)
G880558 NA non-coding upstream 98612 34083060 ~ 34083400 (+)
G880556 NA non-coding upstream 100686 34081114 ~ 34081326 (+)
G880497 NA non-coding upstream 195354 33986457 ~ 33986658 (+)
G881377 NA non-coding downstream 4452 34188929 ~ 34189163 (+)
G881379 NA non-coding downstream 5455 34189932 ~ 34190181 (+)
G881409 NA non-coding downstream 27812 34212289 ~ 34212568 (+)
G881449 NA non-coding downstream 83391 34267868 ~ 34268370 (+)
G881480 NA non-coding downstream 138469 34322946 ~ 34328278 (+)
G880069 NA other upstream 880274 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 1047098 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 1136513 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 2859412 31241426 ~ 31382578 (+)
hsd20b2 LOC106603577 other downstream 250065 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 252863 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 274317 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 302343 34486712 ~ 34488757 (+)
G881536 NA other downstream 305343 34489820 ~ 34494101 (+)

Expression


Co-expression Network