serpinf1 (LOC106603571)


Basic Information

Item Value
gene id serpinf1
gene name LOC106603571
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34349523 ~ 34356204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990102.1
TAACCGCTTGGAAAGcagatgctcttatccagagtgactttcAGGAAAGTGCGTTCATCTTAAGATGGCCAGGTGAGACAAcgacatatcacagtcaaatcaACAGGgaTGATGTGGACGACCCTATTGCTGTGGCTGGgggccctcctctccctctcttatgctcAGTTGTCAGAGACAGAGGGGACGGGAGGGGAAGAGGAAGCTGTGGAGCTCTTTACCACGCCCAGAGCCAAGATGGCTGCCGCCACCTCTGACTTCGGCTACAACCTTTTCCGGGCCCTGGCGGGTCGCGACCCCAAGGCCAACGTATTCCTGGCCCCCATCAGCATCTCTGCAGTGCTCACTCAGCTCTCCATGGGAGCGTCTCCGGATCGTTCAGAGAGGTGGTTGTACAGAGCTCTAAGGTATCACACCCTGCAGGACCCTCAGCTCCACGACACTCTCAGGGACCTACTGGCCTCACTCAGAGCACCTGGCAAAGGCATCAGCATCGCTGCACGCATCTACCTGGCccgcaGACTGCGTCTGAAACCGGAATATTTTGAAGTGGTGGAAAAGCAGTATGGGGTGCGGCCCAAGGCTCTGATGGGCGGGGCTAAAGATGTGAATGAGATCAATGATTGGGTCAAACAGCAGACGGGTGGCAAGGTCGACCGCTTCATGTCCAAGCCCTTGGGACGGAACTCTGGTGTGGTTCCTCTCGGTGCTGCCTACTTCAAAGggaAGTGGATAACTCGGTTCAGTCAGAGTGGATTGATGGAGGACTTCCAGCTTGATGGAGAGGTTCCCGCCCGCATTCccatgatgcaacaggacaattacccagtGAAGATGGGAGTTGACCCAGACCTGGGCTGCACAaTTGCTCAGATCCAGATGCAGGATGATGTCAGCATGTTTGTGTTCCTTCCTGATGATGTCACTCAGAACATGACCCTGGTGGAAGAGAGCCTGACGGCTGAGTTTGTTCAGGACCTCTCCATGACCCTTCACCCCGTGCATGCGGCCCTTACACTACCTGTCCTAAAATTCAGCTACTCCACTGACCTCTTGCCACTGCTCCCTGACCTAGgtctTGCCGAATTTCTGGCAGACACAGACCTGACTAAGATCACGGCTCAGACGGGGAAGCTTGGCAGCCTCAATCATAAGGTTGTTATGGAGATGGCCCCAGAGGGCACCCAGTATGCCAGCTCCAGCCAAGTCCACACGCCCCTGTCGTACCGCGTGGACCGCCCCTTCCTGTTCCTGGTGAGGGATGAGGCCTCGGGGGCACTGCTCTTCATCGGCAGGGTGGTGAACCCACGCAAACTGAGGATATAAGCGCgcacacacgtttgttttactattATTGTGGGGACCAAACAGTTGATTACCATTAAAAATCCTGTGGATCAGATAATACAGTTGGTTAATCCTGTAGGAATACCATGTATACTATTTAGGCCAATAGTCTAAACACTCACTGATATTCCTTGAATTCTCAAGTTGTTTTCAGGAAAAGGAATTtgaaaaataaagcaaactggaatatggggaaaaatgcaccaaattattttttaaccttcaacatagaaatgctaccaaaaataattGTAATTTCTTACAATGTTGAAACCAAATAGCCAAATCATGTTAATCTTACTGACATGCTTCTAAGAGGCACAGGTAATACTTTATGCTTTAACCAAAGAAAATACTCTTCACATTATTGTGTATTGCAATGCAAGAAATAAACATTTAAGTTTtaagtctg
>XM_036990100.1
TCAGCACTCCACTGGAGACACGACTGCTAGAGACATACGTACGGGCGACGTGGACCATAACCGCTTGGAAAGcagatgctcttatccagagtgactttcAGGAAAGTGCGTTCATCTTAAGATGGCCAGgaTGATGTGGACGACCCTATTGCTGTGGCTGGgggccctcctctccctctcttatgctcAGTTGTCAGAGACAGAGGGGACGGGAGGGGAAGAGGAAGCTGTGGAGCTCTTTACCACGCCCAGAGCCAAGATGGCTGCCGCCACCTCTGACTTCGGCTACAACCTTTTCCGGGCCCTGGCGGGTCGCGACCCCAAGGCCAACGTATTCCTGGCCCCCATCAGCATCTCTGCAGTGCTCACTCAGCTCTCCATGGGAGCGTCTCCGGATCGTTCAGAGAGGTGGTTGTACAGAGCTCTAAGGTATCACACCCTGCAGGACCCTCAGCTCCACGACACTCTCAGGGACCTACTGGCCTCACTCAGAGCACCTGGCAAAGGCATCAGCATCGCTGCACGCATCTACCTGGCccgcaGACTGCGTCTGAAACCGGAATATTTTGAAGTGGTGGAAAAGCAGTATGGGGTGCGGCCCAAGGCTCTGATGGGCGGGGCTAAAGATGTGAATGAGATCAATGATTGGGTCAAACAGCAGACGGGTGGCAAGGTCGACCGCTTCATGTCCAAGCCCTTGGGACGGAACTCTGGTGTGGTTCCTCTCGGTGCTGCCTACTTCAAAGggaAGTGGATAACTCGGTTCAGTCAGAGTGGATTGATGGAGGACTTCCAGCTTGATGGAGAGGTTCCCGCCCGCATTCccatgatgcaacaggacaattacccagtGAAGATGGGAGTTGACCCAGACCTGGGCTGCACAaTTGCTCAGATCCAGATGCAGGATGATGTCAGCATGTTTGTGTTCCTTCCTGATGATGTCACTCAGAACATGACCCTGGTGGAAGAGAGCCTGACGGCTGAGTTTGTTCAGGACCTCTCCATGACCCTTCACCCCGTGCATGCGGCCCTTACACTACCTGTCCTAAAATTCAGCTACTCCACTGACCTCTTGCCACTGCTCCCTGACCTAGgtctTGCCGAATTTCTGGCAGACACAGACCTGACTAAGATCACGGCTCAGACGGGGAAGCTTGGCAGCCTCAATCATAAGGTTGTTATGGAGATGGCCCCAGAGGGCACCCAGTATGCCAGCTCCAGCCAAGTCCACACGCCCCTGTCGTACCGCGTGGACCGCCCCTTCCTGTTCCTGGTGAGGGATGAGGCCTCGGGGGCACTGCTCTTCATCGGCAGGGTGGTGAACCCACGCAAACTGAGGATATAAGCGCgcacacacgtttgttttactattATTGTGGGGACCAAACAGTTGATTACCATTAAAAATCCTGTGGATCAGATAATACAGTTGGTTAATCCTGTAGGAATACCATGTATACTATTTAGGCCAATAGTCTAAACACTCACTGATATTCCTTGAATTCTCAAGTTGTTTTCAGGAAAAGGAATTtgaaaaataaagcaaactggaatatggggaaaaatgcaccaaattattttttaaccttcaacatagaaatgctaccaaaaataattGTAATTTCTTACAATGTTGAAACCAAATAGCCAAATCATGTTAATCTTACTGACATGCTTCTAAGAGGCACAGGTAATACTTTATGCTTTAACCAAAGAAAATACTCTTCACATTATTGTGTATTGCAATGCAAGAAATAAACATTTAAGTTTtaagtctg
>XM_036990101.1
ACCCAACAGGCTACGTCAGAGAAGGGCGGGTAAAAGTTGGCTTCACGGCTGTGTGCATCGTCCTGGTACATTCAGCACTCCACTGGAGACACGACTGCTAGAGACATACGTACGGGCGACGTGGACCATAACCGCTTGGAAAGgaTGATGTGGACGACCCTATTGCTGTGGCTGGgggccctcctctccctctcttatgctcAGTTGTCAGAGACAGAGGGGACGGGAGGGGAAGAGGAAGCTGTGGAGCTCTTTACCACGCCCAGAGCCAAGATGGCTGCCGCCACCTCTGACTTCGGCTACAACCTTTTCCGGGCCCTGGCGGGTCGCGACCCCAAGGCCAACGTATTCCTGGCCCCCATCAGCATCTCTGCAGTGCTCACTCAGCTCTCCATGGGAGCGTCTCCGGATCGTTCAGAGAGGTGGTTGTACAGAGCTCTAAGGTATCACACCCTGCAGGACCCTCAGCTCCACGACACTCTCAGGGACCTACTGGCCTCACTCAGAGCACCTGGCAAAGGCATCAGCATCGCTGCACGCATCTACCTGGCccgcaGACTGCGTCTGAAACCGGAATATTTTGAAGTGGTGGAAAAGCAGTATGGGGTGCGGCCCAAGGCTCTGATGGGCGGGGCTAAAGATGTGAATGAGATCAATGATTGGGTCAAACAGCAGACGGGTGGCAAGGTCGACCGCTTCATGTCCAAGCCCTTGGGACGGAACTCTGGTGTGGTTCCTCTCGGTGCTGCCTACTTCAAAGggaAGTGGATAACTCGGTTCAGTCAGAGTGGATTGATGGAGGACTTCCAGCTTGATGGAGAGGTTCCCGCCCGCATTCccatgatgcaacaggacaattacccagtGAAGATGGGAGTTGACCCAGACCTGGGCTGCACAaTTGCTCAGATCCAGATGCAGGATGATGTCAGCATGTTTGTGTTCCTTCCTGATGATGTCACTCAGAACATGACCCTGGTGGAAGAGAGCCTGACGGCTGAGTTTGTTCAGGACCTCTCCATGACCCTTCACCCCGTGCATGCGGCCCTTACACTACCTGTCCTAAAATTCAGCTACTCCACTGACCTCTTGCCACTGCTCCCTGACCTAGgtctTGCCGAATTTCTGGCAGACACAGACCTGACTAAGATCACGGCTCAGACGGGGAAGCTTGGCAGCCTCAATCATAAGGTTGTTATGGAGATGGCCCCAGAGGGCACCCAGTATGCCAGCTCCAGCCAAGTCCACACGCCCCTGTCGTACCGCGTGGACCGCCCCTTCCTGTTCCTGGTGAGGGATGAGGCCTCGGGGGCACTGCTCTTCATCGGCAGGGTGGTGAACCCACGCAAACTGAGGATATAAGCGCgcacacacgtttgttttactattATTGTGGGGACCAAACAGTTGATTACCATTAAAAATCCTGTGGATCAGATAATACAGTTGGTTAATCCTGTAGGAATACCATGTATACTATTTAGGCCAATAGTCTAAACACTCACTGATATTCCTTGAATTCTCAAGTTGTTTTCAGGAAAAGGAATTtgaaaaataaagcaaactggaatatggggaaaaatgcaccaaattattttttaaccttcaacatagaaatgctaccaaaaataattGTAATTTCTTACAATGTTGAAACCAAATAGCCAAATCATGTTAATCTTACTGACATGCTTCTAAGAGGCACAGGTAATACTTTATGCTTTAACCAAAGAAAATACTCTTCACATTATTGTGTATTGCAATGCAAGAAATAAACATTTAAGTTTtaagtctg

Function

NR:

description
pigment epithelium-derived factor-like

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K19614 SERPINF1, PEDF; pigment epithelium-derived factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990102.1 False 1759 mRNA 0.50 9 34349523 34356076
XM_036990100.1 False 1781 mRNA 0.50 9 34349523 34356133
XM_036990101.1 True 1795 mRNA 0.51 8 34349523 34356204

Neighbor

gene id symbol gene type direction distance location
LOC110533693 NA coding downstream 78871 34269661 ~ 34270652 (-)
LOC110534893 LOC106603570 coding downstream 101108 34247477 ~ 34248415 (-)
LOC110534892 LOC106603428 coding downstream 115328 34233136 ~ 34234195 (-)
LOC110534914 LOC106603428 coding downstream 123634 34224948 ~ 34225889 (-)
LOC110534891 LOC106567904 coding downstream 131957 34212587 ~ 34217566 (-)
LOC110533697 LOC106603572 coding upstream 291 34356495 ~ 34363372 (-)
c10h17orf49 cssa04h17orf49 coding upstream 87365 34443569 ~ 34459501 (-)
LOC100335039 LOC100335039 coding upstream 139588 34494606 ~ 34560547 (-)
ap4m1 ap4m1 coding upstream 165026 34521230 ~ 34528777 (-)
LOC110533714 rbmx2 coding upstream 233513 34589717 ~ 34596263 (-)
G881769 NA non-coding downstream 998 34348258 ~ 34348525 (-)
G881763 NA non-coding downstream 8380 34340822 ~ 34341143 (-)
G881762 NA non-coding downstream 8775 34340360 ~ 34340748 (-)
G881757 NA non-coding downstream 13177 34336027 ~ 34336346 (-)
G881755 NA non-coding downstream 14097 34335068 ~ 34335426 (-)
G881774 NA non-coding upstream 23823 34380027 ~ 34380235 (-)
G881776 med31 non-coding upstream 24052 34380256 ~ 34383153 (-)
G881777 NA non-coding upstream 31917 34388121 ~ 34388350 (-)
G881781 NA non-coding upstream 35687 34391891 ~ 34394074 (-)
G881789 NA non-coding upstream 48524 34404728 ~ 34405090 (-)
LOC110533687 NA other downstream 376211 33939072 ~ 33973312 (-)
G880994 NA other downstream 670684 33613325 ~ 33678839 (-)
LOC110533673 NA other downstream 1098002 33153970 ~ 33251521 (-)
G880807 NA other downstream 1184501 33162912 ~ 33165022 (-)
G880718 LOC106603546 other downstream 1311640 33036163 ~ 33037883 (-)
G881778 NA other upstream 56859 34413063 ~ 34417261 (-)
LOC110534894 gpr119 other upstream 242163 34597247 ~ 34599007 (-)
LOC110533718 LOC106603592 other upstream 536775 34891059 ~ 34893957 (-)
G882578 NA other upstream 946710 35302914 ~ 35304055 (-)

Expression


Co-expression Network