med31 (med31)


Basic Information

Item Value
gene id med31
gene name med31
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34380235 ~ 34387056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617187.2
TCGTAAAAAAGTGATACTGCTGCAGTTTACGGAAAATATGGCGACATGATCGGGCTGATTTTGTTGCTGACCAGACCACAACAATTAATTCagcaaattaaaaatatattcGTTTAAACAGCTTACACATTTCCGTTTTAAGGTACCTGTTGTTTTCGTGCAGTCCCAGTCATCTTTAATGGCAGGCGTCATGGAATCAGAGGAGCAGGCAAGGAACCGCTTTCAATCAGAGCTGGAGTTCATCCAATGCTTGGCCAATCCGAATTATCTGAACTTTCTGGCTCAGAGGGGTTACCTGAGAGAAAAACCCTTTGTGAACTACCTGAAGTACCTACTGTACTGGAAGGAGCCTGAATATGCCAAATTCCTGAAATACCCCCACTGCCTGCACATGCTGGAGCTGCTTCAGTACGAGCACTTCAGGAAGGAGCTTGTGAATGCACAATGTGCCAAGTTCATCGATGAGCAGCAATTACTGCACTGGCAGCACTATTCCCGGAAACGCACCCGTCTGCAGCAGGCTCTGGCagagcaacaacagcagcaacagctgCCTCATGGCAATGCTACtgctaaatgagagagagagagagagaatctgtgGCATAAAAAAACAGGATGATTGAACTTGAATGGACATGGACTCAAATGTCAATTCAGCCTCCTGGAAATGTGTGTGATATGGATCATGGCGATGTCTCTCTTTGCTCTTATTTATGTTTCTGACTTTGTAtaataaaaataacttttggttAAAATGCTG
>NM_001160598.1
AGTTTACGGAAAATATGGCGACATGATCGGGCTGATTTTGTTGCTGACCAGACCACAACAATTAATTCagcaaattaaaaatatattcGTTTAAACAGCTTACACATTTCCGTTTTAAGGTACCTGTTGTTTTCGTGCAGTCCCAGTCATCTTTAATGGCAGGCGTCATGGAATCAGAGGAGCAGGCAAGGAACCGCTTTCAATCAGAGCTGGAGTTCATCCAATGCTTGGCCAATCCGAATTATCTGAACTTTCTGGCTCAGAGGGGTTACCTGAGAGAAAAACCCTTTGTGAACTACCTGAAGTACCTACTGTACTGGAAGGAGCCTGAATATGCCAAATTCCTGAAcaaagaggcacggagtttgacGGTAGGCCCTGAaagacatccacaggtgtcctttttttgcgaggcattggataTCATCCCTGGTCTTTGGTTGAATCTGAATTAATTactcgactgaggaaccttacaaataattttatgtgtggggtacagagaagagATACCCCCACTGCCTGCACATGCTGGAGCTGCTTCAGTACGAGCACTTCAGGAAGGAGCTTGTGAATGCACAATGTGCCAAGTTCATCGATGAGCAGCAATTACTGCACTGGCAGCACTATTCCCGGAAACGCACCCGTCTGCAGCAGGCTCTGGCagagcaacaacagcagcaacagctgCCTCATGGCAATGCTACtgctaaatgagagagagagagagagaatctgtgGCATAAAAAAACAGGATGATTGAACTTGAATGGACATGGACTCAAATGTCAATTCAGCCTCCTGGAAATGTGTGTGATATGGATCATGGCGATGTCTCTCTTTGCTCTTATTTATGTTTCTGACTTTGTAtaataaaaataacttttgg

Function

symbol description
med31 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED31 (mediator complex subunit 31).

NR:

description
mediator of RNA polymerase II transcription subunit 31

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15153 MED31, SOH1; mediator of RNA polymerase II transcription subunit 31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617187.2 False 763 mRNA 0.44 4 34380235 34387056
NM_001160598.1 True 889 mRNA 0.44 6 34380258 34387045

Neighbor

gene id symbol gene type direction distance location
LOC110533696 slc13a5 coding upstream 2295 34366052 ~ 34377940 (+)
LOC110533694 LOC106603569 coding upstream 57703 34299393 ~ 34322532 (+)
LOC110534890 LOC106603566 coding upstream 168460 34209804 ~ 34211775 (+)
LOC110533692 LOC106603566 coding upstream 195758 34182012 ~ 34184477 (+)
LOC110533691 LOC106603565 coding upstream 238579 34122721 ~ 34141656 (+)
LOC110533700 LOC106603575 coding downstream 686 34387742 ~ 34391447 (+)
LOC110533701 LOC106603576 coding downstream 4654 34391710 ~ 34397234 (+)
hsd20b2 LOC106603577 coding downstream 35482 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 coding downstream 50070 34437126 ~ 34443357 (+)
rnasekb rnasek coding downstream 71713 34458769 ~ 34472268 (+)
G881498 NA non-coding upstream 14291 34364713 ~ 34365944 (+)
G881499 NA non-coding upstream 16237 34363766 ~ 34363998 (+)
G881488 NA non-coding upstream 46769 34333060 ~ 34333466 (+)
G881486 NA non-coding upstream 48186 34331730 ~ 34332049 (+)
G881480 NA non-coding upstream 51957 34322946 ~ 34328278 (+)
G881504 NA non-coding downstream 10469 34397525 ~ 34397781 (+)
G881507 NA non-coding downstream 12004 34399060 ~ 34399356 (+)
G881531 LOC100194703 non-coding downstream 107499 34494555 ~ 34562820 (+)
G881606 NA non-coding downstream 211071 34598127 ~ 34598341 (+)
LOC110533688 NA other upstream 332511 34044472 ~ 34047724 (+)
G880069 NA other upstream 1078497 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 1245321 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 1334736 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 3057635 31241426 ~ 31382578 (+)
LOC110534915 rps17 other downstream 99764 34486712 ~ 34488757 (+)
G881536 NA other downstream 102764 34489820 ~ 34494101 (+)

Expression


Co-expression Network