hsd20b2 (LOC106603577)


Basic Information

Item Value
gene id hsd20b2
gene name LOC106603577
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34422538 ~ 34435620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618165.2
ACCAATGCGCCGATTAGATCAAGATTCTTGGGCGGAGCGTTGCACGTTTTATGTCTAAGTAACCATGTTTATTTCTAATTTAAAACCAGCCAAAGTTCATATTTTTGAAGAACTGTCTGCTGAAGTGTGAGTGAAATTTGCCCAGACATGGATACTGTATCAGACTCGATGCTTGTGAGGGGACTGGTGTTCATAGGTGGCTTCACAGTGCTGTATTACATGCTCAAATGGTCCTGGATTTGCTGGTGTGGATTCAGAGTGTATGTGCTGTCAAAGGTTTGGCAAACTGATTTAAAGGCATATGGACAATGGGCAGTTGTCACAGGGGCTACCTCAGGGATTGGCAAAGCTTACGCAAATGAGTTGGCCAGAAGAGGTCTGGACATTGTACTGGTCAGCCGGTCAAAAGATAAACTCCACATTGTCGCCAAGGAGATTGAGAGCCAACATGGACGCCAGACTCAGATCATCCAGACAGACTTCACAGAGGGCCATGACATCTACCCTGCTATAGCTGAGGCACTACGGGACCTGGACATAGGCATCCTGGTTAACAATGTAGGCATGAACTATTCTGACAAGTTGGTACATTTCCTGGACATTCCCAACCCTGAGCAGAGAACCACCCAGGTGATCAACTGTAACATCCTCTCTGTCACCCAGATGACCAGACTGGTTCTCCCACGCATGGTTGCAAGAGGGAACGGTCTGATCATCAACATGTCTTCAGAGGCAGGTGCTCAACCACAACCCATGCTGTCTCTCTACTCCGCCACCAAGATTTTTGTAACATATTTTTCCAGATCTCTGAATTCAGAGTACAAGTCACAGGGAATAACAGTTCAGTGTGTGGCTCCCTTTATGGTGTCCACTAACATGACCCACAACTTGCCCCCCAACCTGTTGTTGAAGAGTGCCAGTGCTTTTGCCCGTGAAGCTCTGAACACAGTGGGTCACTCTAGCTACACCAGCGGCTGTGCCTCTCACGCTCTTCAAAACATTGCTCTGTCCATTTTCTTCCCTGATTGGCTACGCCTTTCATCCTACTGTGTGAAGCAGACAGAGAAATTTGCACAGAGCATGGAGAAGAAAATTGATGAAATGACAGAACGTTCTGCGAGCAAAGAGGACTAAGGAGTGCAAAGGAGGTTGCTACTGAAACATTTGTGGTGCTTTAAAGAGGTCATATTGGAAATTGATATGAGAAGTTTTACTTCATATGTAGACAACTAATTGATCAATGTTACTGTTTTTGCATTGACTGCCATTGAAAGGTATTGGTAATAGGAAATAGATTGTGTAATGTTGATGTGATGTAAACAAGCTGACCCCAAATCCATCATGAACTATATAGCCTGAGTGCAGCAGAGTATGATCTGTGGGAGACGCAACTCTCAAACAGGCTTCTATAGTACATATATTAGCTATATACTTATTAGGGATATAGACTACAACATTACAACTGAATGCTTGAACATATGCATGTTCTGGTTGATTTGGACTTTTAACATAGTACAATTTTTGGTATCAACCGTCACATTTTTGTGATCTCGATTTTCTTAGAAATAAATAGAAAGACagttacttttgtttattttattgCCTTTTGCCAACCCATTCACAAATGGCTGTCAAATTGTTGTTACTGAGTAACATATGTGTAAAGGAAACAGTATGTTATAAAAACACATGTTTAATGTAA
>XM_021618166.2
ACCAATGCGCCGATTAGATCAAGATTCTTGGGCGGAGCGTTGCACGTTTTATGTCTAAGTAACCATGTTTATTTCTAATTTAAAACCAGCCAAAGTTCATATTTTTGAAGAACTGTCTGCTGAAGTGTGAGTGAAATTTGCCCAGACATGGATACTGTATCAGACTCGATGCTTGTGAGGGGACTGGTGTTCATAGGTGGCTTCACAGTGCTGTATTACATGCTCAAATGGTCCTGGATTTGCTGGTGTGGATTCAGAGTGTATGTGCTGTCAAAGGTTTGGCAAACTGATTTAAAGGCATATGGACAATGGGCAGTTGTCACAGGGGCTACCTCAGGGATTGGCAAAGCTTACGCAAATGAGTTGGCCAGAAGAGGTCTGGACATTGTACTGGTCAGCCGGTCAAAAGATAAACTCCACATTGTCGCCAAGGAGATTGAGAGCCAACATGGACGCCAGACTCAGATCATCCAGACAGACTTCACAGAGGGCCATGACATCTACCCTGCTATAGCTGAGGCACTACGGGACCTGGACATAGGCATCCTGGTTAACAATGTAGGCATGAACTATTCTGACAAGTTGGTACATTTCCTGGACATTCCCAACCCTGAGCAGAGAACCACCCAGGTGATCAACTGTAACATCCTCTCTGTCACCCAGATGACCAGACTGGTTCTCCCACGCATGGTTGCAAGAGGGAACGGTCTGATCATCAACATGTCTTCAGAGGCAGGTGCTCAACCACAACCCATGCTGTCTCTCTACTCCGCCACCAAGATTTTTGTAACATATTTTTCCAGATCTCTGAATTCAGAGTACAAGTCACAGGGAATAACAGTTCAGTGTGTGGCTCCCTTTATGGTGTCCACTAACATGACCCACAACTTGCCCCCCAACCTGTTGTTGAAGAGTGCCAGTGCTTTTGCCCGTGAAGCTCTGAACACAGTGGGTCACTCTAGCTACACCAGCGGCTGTGCCTCTCACGCTCTTCAAACAGAGAAATTTGCACAGAGCATGGAGAAGAAAATTGATGAAATGACAGAACGTTCTGCGAGCAAAGAGGACTAAGGAGTGCAAAGGAGGTTGCTACTGAAACATTTGTGGTGCTTTAAAGAGGTCATATTGGAAATTGATATGAGAAGTTTTACTTCATATGTAGACAACTAATTGATCAATGTTACTGTTTTTGCATTGACTGCCATTGAAAGGTATTGGTAATAGGAAATAGATTGTGTAATGTTGATGTGATGTAAACAAGCTGACCCCAAATCCATCATGAACTATATAGCCTGAGTGCAGCAGAGTATGATCTGTGGGAGACGCAACTCTCAAACAGGCTTCTATAGTACATATATTAGCTATATACTTATTAGGGATATAGACTACAACATTACAACTGAATGCTTGAACATATGCATGTTCTGGTTGATTTGGACTTTTAACATAGTACAATTTTTGGTATCAACCGTCACATTTTTGTGATCTCGATTTTCTTAGAAATAAATAGAAAGACagttacttttgtttattttattgCCTTTTGCCAACCCATTCACAAATGGCTGTCAAATTGTTGTTACTGAGTAACATATGTGTAAAGGAAACAGTATGTTATAAAAACACATGTTTAATGTAA
>XM_036990107.1
ACCAATGCGCCGATTAGATCAAGATTCTTGGGCGGAGCGTTGCACGTTTTATGTCTAAGTAACCATGTTTATTTCTAATTTAAAACCAGCCAAAGTTCATATTTTTGAAGAACTGTCTGCTGAAGTGTGAGTGAAATTTGCCCAGACATGGATACTGTATCAGACTCGATGCTTGTGAGGGGACTGGTGTTCATAGGTGGCTTCACAGTGCTGTATTACATGCTCAAATGGTCCTGGATTTGCTGGTGTGGATTCAGAGTGTATGTGCTGTCAAAGGTTTGGCAAACTGATTTAAAGGCATATGGACAATGGGCAGTTGTCACAGGGGCTACCTCAGGGATTGGCAAAGCTTACGCAAATGAGTTGGCCAGAAGAGGTCTGGACATTGTACTGGTCAGCCGGTCAAAAGATAAACTCCACATTGTCGCCAAGGAGATTGAGAGCCAACATGGACGCCAGACTCAGATCATCCAGACAGACTTCACAGAGGGCCATGACATCTACCCTGCTATAGCTGAGGCACTACGGGACCTGGACATAGGCATCCTGGTTAACAATGTAGGCATGAACTATTCTGACAAGTTGGTACATTTCCTGGACATTCCCAACCCTGAGCAGAGAACCACCCAGGTGATCAACTGTAACATCCTCTCTGTCACCCAGATGACCAGACTGGTTCTCCCACGCATGGTTGCAAGAGGGAACGGTCTGATCATCAACATGTCTTCAGAGGCAGGTGCTCAACCACAACCCATGCTGTCTCTCTACTCCGCCACCAAGTGTGTGGCTCCCTTTATGGTGTCCACTAACATGACCCACAACTTGCCCCCCAACCTGTTGTTGAAGAGTGCCAGTGCTTTTGCCCGTGAAGCTCTGAACACAGTGGGTCACTCTAGCTACACCAGCGGCTGTGCCTCTCACGCTCTTCAAAACATTGCTCTGTCCATTTTCTTCCCTGATTGGCTACGCCTTTCATCCTACTGTGTGAAGCAGACAGAGAAATTTGCACAGAGCATGGAGAAGAAAATTGATGAAATGACAGAACGTTCTGCGAGCAAAGAGGACTAAGGAGTGCAAAGGAGGTTGCTACTGAAACATTTGTGGTGCTTTAAAGAGGTCATATTGGAAATTGATATGAGAAGTTTTACTTCATATGTAGACAACTAATTGATCAATGTTACTGTTTTTGCATTGACTGCCATTGAAAGGTATTGGTAATAGGAAATAGATTGTGTAATGTTGATGTGATGTAAACAAGCTGACCCCAAATCCATCATGAACTATATAGCCTGAGTGCAGCAGAGTATGATCTGTGGGAGACGCAACTCTCAAACAGGCTTCTATAGTACATATATTAGCTATATACTTATTAGGGATATAGACTACAACATTACAACTGAATGCTTGAACATATGCATGTTCTGGTTGATTTGGACTTTTAACATAGTACAATTTTTGGTATCAACCGTCACATTTTTGTGATCTCGATTTTCTTAGAAATAAATAGAAAGACagttacttttgtttattttattgCCTTTTGCCAACCCATTCACAAATGGCTGTCAAATTGTTGTTACTGAGTAACATATGTGTAAAGGAAACAGTATGTTATAAAAACACATGTTTAATGTAA
>TU1003053
CTGTTACAGTATCCTTCCTTGCATCTTTGTGTTTCTTCCAATCGCTTGTGCTTTCTTAATTTCCTCTCCTTTAGTGTGTGGCTCCCTTTATGGTGTCCACTAACATGACCCACAACTTGCCCCCCAACCTGTTGTTGAAGAGTGCCAGTGCTTTTGCCCGTGAAGCTCTGAACACAGTGGGTCACTCTAGCTACACCAGCGGCTGTGCCTCTCACGCTCTTCAAAACATTGCTCTGTCCATTTTCTTCCCTGATTGGCTACGCCTTTCATCCTACTGTGTGAAGCAGACAGAGAAATTTGCACAGAGCATGGAGAAGAAAATTGATGAAATGACAGAACGTTCTGCGAGCAAAGAGGACTAAGGAGTGCAAAGGAGGTTGCTACTGAAACATTTGTGGTGCTTTAAAGAGGTCATATTGGAAATTGATATGAGAAGTTTTACTTCATATGTAGACAACTAATTGATCAATGTTACTGTTTTTGCATTGACTGCCATTGAAAGGTATTGGTAATAGGAAATAGATTGTGTAATGTTGATGTGATGTAAACAAGCTGACCCCAAATCCATCATGAACTATATAGCCTGAGTGCAGCAGAGTATGATCTGTGGGAGACGCAACTCTCAAACAGGCTTCTATAGTACATATATTAGCTATATACTTATTAGGGATATAGACTACAACATTACAACTGAATGCTTGAACATATGCATGTTCTGGTTGATTTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618165.2 False 1702 mRNA 0.43 11 34422538 34435620
XM_021618166.2 False 1639 mRNA 0.42 11 34422538 34435620
XM_036990107.1 False 1636 mRNA 0.43 10 34422538 34435620
TU1003053 True 728 TUCP 0.41 2 34434542 34435418

Neighbor

gene id symbol gene type direction distance location
LOC110533701 LOC106603576 coding upstream 25304 34391710 ~ 34397234 (+)
LOC110533700 LOC106603575 coding upstream 31091 34387742 ~ 34391447 (+)
med31 med31 coding upstream 35482 34380235 ~ 34387056 (+)
LOC110533696 slc13a5 coding upstream 44598 34366052 ~ 34377940 (+)
LOC110533694 LOC106603569 coding upstream 100006 34299393 ~ 34322532 (+)
LOC110533705 LOC106603578 coding downstream 1506 34437126 ~ 34443357 (+)
rnasekb rnasek coding downstream 23149 34458769 ~ 34472268 (+)
LOC110534915 rps17 coding downstream 51092 34486712 ~ 34488757 (+)
taf9 LOC106603584 coding downstream 93100 34528720 ~ 34535561 (+)
LOC110533713 LOC106603586 coding downstream 111308 34546928 ~ 34589309 (+)
G881507 NA non-coding upstream 23182 34399060 ~ 34399356 (+)
G881504 NA non-coding upstream 24757 34397525 ~ 34397781 (+)
G881498 NA non-coding upstream 56594 34364713 ~ 34365944 (+)
G881499 NA non-coding upstream 58540 34363766 ~ 34363998 (+)
G881531 LOC100194703 non-coding downstream 58935 34494555 ~ 34562820 (+)
G881606 NA non-coding downstream 162507 34598127 ~ 34598341 (+)
G881607 NA non-coding downstream 163919 34599539 ~ 34600021 (+)
G881633 NA non-coding downstream 212927 34648547 ~ 34648928 (+)
LOC110533716 LOC106603589 non-coding downstream 238350 34622408 ~ 34674877 (+)
LOC110533688 NA other upstream 374814 34044472 ~ 34047724 (+)
G880069 NA other upstream 1120800 33300765 ~ 33301738 (+)
LOC110533672 LOC106603547 other upstream 1287624 33130843 ~ 33140211 (+)
LOC110533671 LOC106603546 other upstream 1377039 32981866 ~ 33045499 (+)
LOC110534883 med13 other upstream 3099938 31241426 ~ 31382578 (+)
G881536 NA other downstream 54200 34489820 ~ 34494101 (+)

Expression


Co-expression Network