Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110534915 |
| gene name | rps17 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 34486712 ~ 34488757 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rps17 | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; immature eye; and midbrain. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17). |
| description |
|---|
| 40S ribosomal protein S17 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021619832.2 | False | 424 | mRNA | 0.52 | 2 | 34486712 | 34488757 |
| TU1003061 | True | 273 | TUCP | 0.55 | 2 | 34486820 | 34488714 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rnasekb | rnasek | coding | upstream | 14444 | 34458769 ~ 34472268 (+) |
| LOC110533705 | LOC106603578 | coding | upstream | 44385 | 34437126 ~ 34443357 (+) |
| hsd20b2 | LOC106603577 | coding | upstream | 51092 | 34422538 ~ 34435620 (+) |
| LOC110533701 | LOC106603576 | coding | upstream | 89478 | 34391710 ~ 34397234 (+) |
| LOC110533700 | LOC106603575 | coding | upstream | 95265 | 34387742 ~ 34391447 (+) |
| taf9 | LOC106603584 | coding | downstream | 39963 | 34528720 ~ 34535561 (+) |
| LOC110533713 | LOC106603586 | coding | downstream | 58171 | 34546928 ~ 34589309 (+) |
| slc25a14 | LOC106567890 | coding | downstream | 121311 | 34610068 ~ 34618970 (+) |
| LOC110533716 | LOC106603589 | coding | downstream | 133651 | 34622408 ~ 34674877 (+) |
| LOC110533717 | LOC106603590 | coding | downstream | 234111 | 34722868 ~ 34741451 (+) |
| G881507 | NA | non-coding | upstream | 87356 | 34399060 ~ 34399356 (+) |
| G881504 | NA | non-coding | upstream | 88931 | 34397525 ~ 34397781 (+) |
| G881498 | NA | non-coding | upstream | 120768 | 34364713 ~ 34365944 (+) |
| G881499 | NA | non-coding | upstream | 122714 | 34363766 ~ 34363998 (+) |
| G881531 | LOC100194703 | non-coding | downstream | 5798 | 34494555 ~ 34562820 (+) |
| G881606 | NA | non-coding | downstream | 109370 | 34598127 ~ 34598341 (+) |
| G881607 | NA | non-coding | downstream | 110782 | 34599539 ~ 34600021 (+) |
| G881633 | NA | non-coding | downstream | 159790 | 34648547 ~ 34648928 (+) |
| LOC110533688 | NA | other | upstream | 438988 | 34044472 ~ 34047724 (+) |
| G880069 | NA | other | upstream | 1184974 | 33300765 ~ 33301738 (+) |
| G881536 | NA | other | downstream | 1063 | 34489820 ~ 34494101 (+) |
| G882013 | NA | other | downstream | 319845 | 34808602 ~ 34811529 (+) |
| G882202 | NA | other | downstream | 586841 | 35075598 ~ 35075967 (+) |
| G882225 | NA | other | downstream | 618705 | 35107462 ~ 35109391 (+) |
