LOC110533724 (LOC106603597)


Basic Information

Item Value
gene id LOC110533724
gene name LOC106603597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35029267 ~ 35039130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618193.2
AGAGGCGGCAAGTAGACAGCATCATATCTGCAAGCTGCTCAATGTCTATGGGCATATGTAGAATACAGATGTACATTTGAATTACATCTGTTTAGATTTAGGCATTTCTGTTTAATATCTTATGCGCTATTGGATAATATGTATGTCGCCTATGCTACCTATGGCCAGTAGTTTTCAAATCTACTAAAATCAACTATTAACTAACAAAACACGCATGTGTTAATGCTGTTAAATTACGTCATCATTTAGCTGTGAACTAATACGCGGGCAGTCTCAGAGACAGAGGCCGACTGAGGAGGTTTTTAACAAGCGGAAGTGCGCGCGCTGATTCTTGCTGACGGAGTTGAGGGTTACAAAAGGTTCAGGGGACGTCTGAACCATCTAAAAACAAAACGCTTCTGCTGAAAGCCATGTCTAATGAACACACACCCCTCCTCGCCCATGGGGTATGTGGTCTGTCAGCAGACAATGCAGTGTGTGGCATAGGGGCGTCAGAGGGCACTGGGGAGGCCAGCACTCCTAATGCTGTACCTCGAAAGCTCAACACCTTCTTCGGGGTGATGGTGCCCACTGTCCTCTCCATGTTTAGCATTGTCCTCTTCCTCAGAACTGGGTTTGTGGTTGGTCATGCGGGGCTCTTGCAGGGTCTTGTGATGCTGCTTGTTGCCTACACCATTATCTCCCTCACCATCTTGTCCATCTGTGCTATTTCCACCAACGGTGCTGTGCAGGGAGGTGGGGCCTATTTCATGATTAGTCGATCTTTGGGCCCAGAGTTTGGAGGAAGCATTGGCCTCATGTTCTTCCTGGCCAAAGTGTGTGCATGTGGAGTGTATGTGCTTGGTCTGGTAGAGGCACTACTTGACATATTTGGTCAGGATCCAGCGTCCTCCTCTGCGTTTCGAGTGCTTCCCCAGGGCTACTGGTACACAGTGCTGTACTCTTCCATAGTTCTCCTGCTGGTTCTGATGGTGTGCCTAGTGGGCGCCCACATTTTCGCCCGCACCTCCTTCCTCATCCTGCTGGTGGTGACCATCTCCCTTCTGTCCATCTACATCAGCCCCCTGGCGCTGACCACGCCCCTAAAGTTCCTCATCACCCACCAGGGCCCTGGCAACCAGACCCTCACCTACAATGCCAGCTACACAGGCTTCAACGGCACCACGCTGAAGGACAACCTGGGCTCGGGCTACACTGTGGACTACAGCACTGGTAAAGTCATGTCATTCGCCACTGTGTTCGCTGTCATGTTCACCAGCTGCACCGGAATCATGGCCGGAGCCAACATGTCAGGAGAGCTGAAGAACCCCAGTGCTGCCATTCCCAAAGGCACCATTATTGCAGTCCTCTACACCTTCATAGTCTATGTCCTGCTCTTCATCCTGGCCAGCTCCACATGTGAAAGGACCCTGTTGGCTCAGGATTACGGGTTTTTCCAGCGTATAAACATCTGGCCTCCATTTGTCACCATCGGGATCTATTGTTCTGCCCTGTCAGCAGCCATGTGCTCTCTGATTGGGGCGTCCCGGATCCTTCACGCCCTCGCACTGGACCAACTCTTTGGTTTTCCATTGGCTCCTGCTGCTATCACATCCAGCTCAGGCAACCCATGGGTGGCAGTGCTCTACACCTGGGGGTTGGCACAGtgtgtggtgtttgCAGGCCAGCTTAATGCCATAGCTGGCCTGGTGACAGTATTCTACCTGCTGGCCTATGCTGCTGTCGACCTGGCCTGTCTGGCTCTGGAGTGGGCATCGGCCCCCAACTTCAGGCCCACTTTCCAGGTGTTCTCCTGGCACACGTGTCTGCTGGGCATCCTAAGCTGTCTGGTGATGATGTTTGTCATTAACCCGGTCTACTCCTCAGCCAGCATCGTCCTCCTCTTACTGCTGTTGCTTTTCCTGCACTACAGATCACCAACCAGCAGCTGGGGATACATCAGCCAGGCTCTCATCTTTCATCAGGTGCGTAAGTATCTGCTGATGCTGGACGTGAGGAAGGACCATGTGAAGTTTTGGAGGCCCCAGGTGTTGTTGATGGTGGCCAACCCTCGCTCCTCCTGCCAGCTCATCAACTTTGTCAACCAGTTGAAGAAGGGCGGGCTGTTTGTTCTGGGACACGTGAAGCTGGGAGATCTGGACACCCTGCCTTCTGACCCTGTCCAGCAGCAGTATAACTTCTGGCTGAGTCTGGTAGATAAGCTGGGGGTGAAGGCCTTCGTGGATCTGACTCTGTCCCCCTCTGTGAGGCAGGGAACACAGCATCTGCTCCGTATCACTGGCCTGGGCGGCATGAAGCCCAACACTCTGGTCTTGGGGTTCTACGACAGCTGCACCCCTGAGGACTACTTCCTCCAAGACCCTGCCTTCTGTGAGTCAAAAGGGTCTGGAGGGGATGATTTTGGGGTGGATCTGCCCTCTCTGCAAGCCCACTTCCCCCCGGTCCGCCATGTGGAGAGCCCACGCTGGCTCACGTCAGAGGAGTATGTGGGAATCATCTCGGATGCCATCAAGATGAGTAAGAACGTGTGTCTTGGCCGCTATTTCTTCCAGCTGCAGGGAGAGGGCATGGGGACCAAGACGGACGGGGCCACGAGGATCATCGACGTGTGGCCCCTCAACCTGCTGCAGCCGAGCAGCACGTCTGCAGCCTCCGTGGATGTGTGCAGTCTCTTCCTGCTGCAGATGGCGTGTGTTCTCAACATGGCCAGCAGATGGCGCCATGCCAAAATGAGAATATTCCTGTGTGTGGAGGCAGAGTCCAGCGACCAGGGTTGGATGGTTAAAGAGGAGACCTACCGGGAGCTGTTGAGGAAGCTGAGGATCAGGGCCTCCATCAAGATAGTGCCCTGGGACTCTGTGGTGCAGCTCTatggacagaaacagacacaggaCCCAGAGCTGGAGGGCCTGACGAAGCCGGCCCAGGCCCTTTCAGAGGACTTCCAGTCTGCAGTCAACAGGATGCTGATGGAGCACAGTGCTGAGGCAGCTGTCCGCTTCCTGTATTTACCACGCCCCCCTGCTCACTCCAGCCAATCACACACATATCTCAGTCAGTTGGAAGCTGTGACTTATGGTTTAGGCCCAACCCTCTTGATTCATGGTCTCACCCCAGTCACGTGCACTGAGCTTTGAGTGTCACTGTATGTTTATGGGatcaaaatgtcatgtaattaacTTCATCCTGAACATGATAGAAAGGACAGTCTAAATGCTTACAATATGAGCTACTTTACATAACATACTTTTTAGTTAGAAaataaacacacaggcacactacACAACGGGACCTATAAGTATAGCTCTGTTCCCTGGGCATGTAGTTTCACATCTTGTATTGTAACTCATTGACACATCCACTCATTTCTCAAATGAACACATTCAACACCTAGTCAGTCACAGTGGTACCTACCTACTTTCtgtaatgtatttatttgttaaCTGTAATTTAATGGAGTACTTGTCTCATGCCGTTGTGTTGGTTGGGTAATAATATAAGTACATTTATGTTGTGCCTAACATAGCAGATGTAGTTTTCATAAAAAACCTCTGCTCTGGAATTGACCGTGTGGCCTGAGAGTGACACTGATTCAGTGTGAGTGAATGTTACATGTCAGTAGATCAAATGGTCTGTTCTGCGGCACAGGACCAAAGAAGAATCATATGATAGGTTGAATGTTGATGGAGGGAAAATGGATTCTGAAATAGAGAAAGGGCAACATATGCTAACTAGCTATGGAAACTAGAATTTTGTGTTCCTTGTGTTCTTTTATTTGTTATTTGATGCTGGTACAATCGCTTTCCATTGATCCCTTTTCCCAGTGTATTCCTCTTCAGATTGTGACCCAGTTTGGGAGAGCTCACGAGTGTCTTTGGACCAAATAATCTCTTAGGATTTTGGGTCACTCACCAATTGGTCGTGCTTGAAATGCTGCTTCTTCGGACTACTCTGTGGTCCATGATGGAACATGAATTCAAACTTCCTGAAACCGCTATGAACTACATTAGTGCCTAATGCTTGACAATATTGTCATAATACACAAGCATTAAGCCACTGGCAGGCAGACTAAATATGGATTGCTGATATATTTAGTCTAATTTATAATGCATCACCCTTCTACCAAATGCTAAGGATCATGCCATTCATTTGTTACTTGGGAAAATGATTTCTATTTTTATGCTGTCTTGCTATGCTTTTCTCATGGACAGATTTGGAAACAGAATGTTACTGCAAGGAGTTTGGTCTCCATGAAAAcaattattattaatttagaGGCATGTAGTCGGCGCTAAATGAAAGCTTACACATTTCACAACTTGTGGTGGGATGTTTGTGCTAAAGCAGAAATAGTTTCCTCTTTACAGTCCTATGAAGTTACTGTATATTTCTGACTCTGCTCAGAATGTACTGTTCTCAGGTTGTGCCACACAGACTGTTCTCTAGAGTCTGTGGACTGATCAGTGAGTGCCAGACAGGCTGCTTGTGAGTTAATAAGGACTCTGTCCAAGCAAATGACTCAATAGAAAATGTCAAAAACCAAAGTAATTACATTAAATGTTTTTATAACATACTGTTTCCTTTACACATATGTTACTCCGTAACAACAATTTGATAGTCATTTGTGAATGGGTTGGCAAAAGGcaataaaataaacaaaagtaa
>XM_036990117.1
TAGAGGCGGCAAGTAGACAGCATCATATCTGCAAGCTGCTCAATGTCTATGGGCATATGTAGAATACAGATGTACATTTGAATTACATCTGTTTAGATTTAGGCATTTCTGTTTAATATCTTATGCGCTATTGGATAATATGTATGTCGCCTATGCTACCTATGGCCAGTAGTTTTCAAATCTACTAAAATCAACTATTAACTAACAAAACACGCATGTGTTAATGCTGTTAAATTACGTCATCATTTAGCTGTGAACTAATACGCGGGCAGTCTCAGAGACAGAGGCCGACTGAGGAGGTTTTTAACAAGCGGAAGTGCGCGCGCTGATTCTTGCTGACGGAGTTGAGGGTTACAAAAGGTTCAGGGGACGTCTGAACCATCTAAAAACAAAACGCTTCTGCTGAAAGCCATGTCTAATGAACACACACCCCTCCTCGCCCATGGGGTATGTGGTCTGTCAGCAGACAATGCAGTGTGTGGCATAGGGGCGTCAGAGGGCACTGGGGAGGCCAGCACTCCTAATGCTGTACCTCGAAAGCTCAACACCTTCTTCGGGGTGATGGTGCCCACTGTCCTCTCCATGTTTAGCATTGTCCTCTTCCTCAGAACTGGGTTTGTGGTTGGTCATGCGGGGCTCTTGCAGGGTCTTGTGATGCTGCTTGTTGCCTACACCATTATCTCCCTCACCATCTTGTCCATCTGTGCTATTTCCACCAACGGTGCTGTGCAGGGAGGTGGGGCCTATTGTATCCTTAACACCGCGTCCTCCTCTGCGTTTCGAGTGCTTCCCCAGGGCTACTGGTACACAGTGCTGTACTCTTCCATAGTTCTCCTGCTGGTTCTGATGGTGTGCCTAGTGGGCGCCCACATTTTCGCCCGCACCTCCTTCCTCATCCTGCTGGTGGTGACCATCTCCCTTCTGTCCATCTACATCAGCCCCCTGGCGCTGACCACGCCCCTAAAGTTCCTCATCACCCACCAGGGCCCTGGCAACCAGACCCTCACCTACAATGCCAGCTACACAGGCTTCAACGGCACCACGCTGAAGGACAACCTGGGCTCGGGCTACACTGTGGACTACAGCACTGGTAAAGTCATGTCATTCGCCACTGTGTTCGCTGTCATGTTCACCAGCTGCACCGGAATCATGGCCGGAGCCAACATGTCAGGAGAGCTGAAGAACCCCAGTGCTGCCATTCCCAAAGGCACCATTATTGCAGTCCTCTACACCTTCATAGTCTATGTCCTGCTCTTCATCCTGGCCAGCTCCACATGTGAAAGGACCCTGTTGGCTCAGGATTACGGGTTTTTCCAGCGTATAAACATCTGGCCTCCATTTGTCACCATCGGGATCTATTGTTCTGCCCTGTCAGCAGCCATGTGCTCTCTGATTGGGGCGTCCCGGATCCTTCACGCCCTCGCACTGGACCAACTCTTTGGTTTTCCATTGGCTCCTGCTGCTATCACATCCAGCTCAGGCAACCCATGGGTGGCAGTGCTCTACACCTGGGGGTTGGCACAGtgtgtggtgtttgCAGGCCAGCTTAATGCCATAGCTGGCCTGGTGACAGTATTCTACCTGCTGGCCTATGCTGCTGTCGACCTGGCCTGTCTGGCTCTGGAGTGGGCATCGGCCCCCAACTTCAGGCCCACTTTCCAGGTGTTCTCCTGGCACACGTGTCTGCTGGGCATCCTAAGCTGTCTGGTGATGATGTTTGTCATTAACCCGGTCTACTCCTCAGCCAGCATCGTCCTCCTCTTACTGCTGTTGCTTTTCCTGCACTACAGATCACCAACCAGCAGCTGGGGATACATCAGCCAGGCTCTCATCTTTCATCAGGTGCGTAAGTATCTGCTGATGCTGGACGTGAGGAAGGACCATGTGAAGTTTTGGAGGCCCCAGGTGTTGTTGATGGTGGCCAACCCTCGCTCCTCCTGCCAGCTCATCAACTTTGTCAACCAGTTGAAGAAGGGCGGGCTGTTTGTTCTGGGACACGTGAAGCTGGGAGATCTGGACACCCTGCCTTCTGACCCTGTCCAGCAGCAGTATAACTTCTGGCTGAGTCTGGTAGATAAGCTGGGGGTGAAGGCCTTCGTGGATCTGACTCTGTCCCCCTCTGTGAGGCAGGGAACACAGCATCTGCTCCGTATCACTGGCCTGGGCGGCATGAAGCCCAACACTCTGGTCTTGGGGTTCTACGACAGCTGCACCCCTGAGGACTACTTCCTCCAAGACCCTGCCTTCTGTGAGTCAAAAGGGTCTGGAGGGGATGATTTTGGGGTGGATCTGCCCTCTCTGCAAGCCCACTTCCCCCCGGTCCGCCATGTGGAGAGCCCACGCTGGCTCACGTCAGAGGAGTATGTGGGAATCATCTCGGATGCCATCAAGATGAGTAAGAACGTGTGTCTTGGCCGCTATTTCTTCCAGCTGCAGGGAGAGGGCATGGGGACCAAGACGGACGGGGCCACGAGGATCATCGACGTGTGGCCCCTCAACCTGCTGCAGCCGAGCAGCACGTCTGCAGCCTCCGTGGATGTGTGCAGTCTCTTCCTGCTGCAGATGGCGTGTGTTCTCAACATGGCCAGCAGATGGCGCCATGCCAAAATGAGAATATTCCTGTGTGTGGAGGCAGAGTCCAGCGACCAGGGTTGGATGGTTAAAGAGGAGACCTACCGGGAGCTGTTGAGGAAGCTGAGGATCAGGGCCTCCATCAAGATAGTGCCCTGGGACTCTGTGGTGCAGCTCTatggacagaaacagacacaggaCCCAGAGCTGGAGGGCCTGACGAAGCCGGCCCAGGCCCTTTCAGAGGACTTCCAGTCTGCAGTCAACAGGATGCTGATGGAGCACAGTGCTGAGGCAGCTGTCCGCTTCCTGTATTTACCACGCCCCCCTGCTCACTCCAGCCAATCACACACATATCTCAGTCAGTTGGAAGCTGTGACTTATGGTTTAGGCCCAACCCTCTTGATTCATGGTCTCACCCCAGTCACGTGCACTGAGCTTTGAGTGTCACTGTATGTTTATGGGatcaaaatgtcatgtaattaacTTCATCCTGAACATGATAGAAAGGACAGTCTAAATGCTTACAATATGAGCTACTTTACATAACATACTTTTTAGTTAGAAaataaacacacaggcacactacACAACGGGACCTATAAGTATAGCTCTGTTCCCTGGGCATGTAGTTTCACATCTTGTATTGTAACTCATTGACACATCCACTCATTTCTCAAATGAACACATTCAACACCTAGTCAGTCACAGTGGTACCTACCTACTTTCtgtaatgtatttatttgttaaCTGTAATTTAATGGAGTACTTGTCTCATGCCGTTGTGTTGGTTGGGTAATAATATAAGTACATTTATGTTGTGCCTAACATAGCAGATGTAGTTTTCATAAAAAACCTCTGCTCTGGAATTGACCGTGTGGCCTGAGAGTGACACTGATTCAGTGTGAGTGAATGTTACATGTCAGTAGATCAAATGGTCTGTTCTGCGGCACAGGACCAAAGAAGAATCATATGATAGGTTGAATGTTGATGGAGGGAAAATGGATTCTGAAATAGAGAAAGGGCAACATATGCTAACTAGCTATGGAAACTAGAATTTTGTGTTCCTTGTGTTCTTTTATTTGTTATTTGATGCTGGTACAATCGCTTTCCATTGATCCCTTTTCCCAGTGTATTCCTCTTCAGATTGTGACCCAGTTTGGGAGAGCTCACGAGTGTCTTTGGACCAAATAATCTCTTAGGATTTTGGGTCACTCACCAATTGGTCGTGCTTGAAATGCTGCTTCTTCGGACTACTCTGTGGTCCATGATGGAACATGAATTCAAACTTCCTGAAACCGCTATGAACTACATTAGTGCCTAATGCTTGACAATATTGTCATAATACACAAGCATTAAGCCACTGGCAGGCAGACTAAATATGGATTGCTGATATATTTAGTCTAATTTATAATGCATCACCCTTCTACCAAATGCTAAGGATCATGCCATTCATTTGTTACTTGGGAAAATGATTTCTATTTTTATGCTGTCTTGCTATGCTTTTCTCATGGACAGATTTGGAAACAGAATGTTACTGCAAGGAGTTTGGTCTCCATGAAAAcaattattattaatttagaGGCATGTAGTCGGCGCTAAATGAAAGCTTACACATTTCACAACTTGTGGTGGGATGTTTGTGCTAAAGCAGAAATAGTTTCCTCTTTACAGTCCTATGAAGTTACTGTATATTTCTGACTCTGCTCAGAATGTACTGTTCTCAGGTTGTGCCACACAGACTGTTCTCTAGAGTCTGTGGACTGATCAGTGAGTGCCAGACAGGCTGCTTGTGAGTTAATAAGGACTCTGTCCAAGCAAATGACTCAATAGAAAATGTCAAAAACCAAAGTAATTACATTAAATGTTTTTATAACATACTGTTTCCTTTACACATATGTTACTCCGTAACAACAATTTGATAGTCATTTGTGAATGGGTTGGCAAAAGGcaataaaataaacaaaagtaa

Function

NR:

description
solute carrier family 12 member 9-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618193.2 False 4665 mRNA 0.48 14 35029267 35039129
XM_036990117.1 True 4543 mRNA 0.48 13 35029267 35039130

Neighbor

gene id symbol gene type direction distance location
gucy2d LOC106603596 coding downstream 16400 34992357 ~ 35012867 (-)
si:ch211-284e13.6 LOC106603595 coding downstream 39804 34980182 ~ 34989463 (-)
si:ch211-284e13.4 LOC106603593 coding downstream 61998 34953851 ~ 34967269 (-)
LOC118936924 NA coding downstream 103344 34924931 ~ 34925923 (-)
LOC110533718 LOC106603592 coding downstream 135310 34891059 ~ 34893957 (-)
LOC110533725 LOC106603599 coding upstream 2642 35041772 ~ 35044627 (-)
LOC110533727 LOC106603600 coding upstream 33387 35072517 ~ 35120162 (-)
LOC110533729 LOC106603602 coding upstream 84015 35123145 ~ 35159339 (-)
LOC118966630 NA coding upstream 120414 35159544 ~ 35160053 (-)
LOC110534897 LOC106603603 coding upstream 124468 35163598 ~ 35172142 (-)
G882461 NA non-coding downstream 2959 35025864 ~ 35026308 (-)
G882460 NA non-coding downstream 3820 35024928 ~ 35025447 (-)
G882458 NA non-coding downstream 5484 35023579 ~ 35023783 (-)
G882457 NA non-coding downstream 5818 35023158 ~ 35023449 (-)
G882454 NA non-coding downstream 9727 35019320 ~ 35019540 (-)
G882380 LOC105023919 non-coding upstream 22664 35061794 ~ 35063411 (-)
G882379 NA non-coding upstream 25111 35064241 ~ 35068521 (-)
G882469 NA non-coding upstream 35604 35074734 ~ 35075000 (-)
G882481 NA non-coding upstream 65969 35105099 ~ 35105381 (-)
LOC110534894 gpr119 other downstream 430592 34597247 ~ 34599007 (-)
LOC110533714 rbmx2 other downstream 433085 34589717 ~ 34596263 (-)
G881778 NA other downstream 612006 34413063 ~ 34417261 (-)
LOC110533687 NA other downstream 1055955 33939072 ~ 33973312 (-)
G882578 NA other upstream 263784 35302914 ~ 35304055 (-)
G882539 NA other upstream 281684 35320814 ~ 35321706 (-)
G882631 NA other upstream 388119 35427249 ~ 35428208 (-)
G882971 rb1 other upstream 559187 35598317 ~ 35599085 (-)
G883128 NA other upstream 841394 35880524 ~ 35880951 (-)

Expression


Co-expression Network