LOC110533735 (rn167)


Basic Information

Item Value
gene id LOC110533735
gene name rn167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35344593 ~ 35357905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618218.2
TTTATAAATCAATTATCACACCACTTCTCCCTAGATAGCTAATTAGATATGTTTTACTTCCGATTATTGATATGGTTCTGATCAGTTGATCGGACAGTCAGTGATGATCAACCTGACATAAAGTACCGTAGTTTTAagatcgctagctagctaacgttaaaatATATTGGCTAAGATTACAGCTAGCTAATGTAAGCGTAGCTATCAATCCGTGGTAAATCAAATTCGtgtttgttgttgtcttagcgcACCCGGCTAGCGAGCTAACGTGAACTTATCAGGCCAAGTAAACtaactaactttagctagctgAGTTGTTACCGAACATAATAGTTTTGTCCACCAGACCGAATGTTTTCCCCCCATTGATTACAATTTTTTAACGTGTTTTCGCTATTTGCTAGCTGGGAACGCTAAATAGCTCTTTGTGTTGTATTTACAGGCACCATTGATAGTAAAACTATTATACCGTGAAAGTGTGTTCGTTTATTTCAACAGCTTGCAACTGCATCCCGCAATTCTGGGCGTTCCTGTATTGTGGGCTTTCCCCGCCATGGGGTGATGGCTATTTCGCGACACCGTTAGCTATGGCCTGTTATGTACAGTCGGGGGTTTACTGTCTACCGGTCGCTCCCGCTAGCGCGATAGGATGGGGCTACACGGCTGAACTTTCCAGcttcctggctctactcatcccattctccagacagacagtgaggtagGATGTTGGGTCTGTGGTGCATGGGTGCCCGACTGGGCGTTCTCACTCTGGCGCTGTGCTGTACACTGGCTCCCTTACCTGCACACGCGTACATCTATGCTCATTACAGCAATATGACCAACATGTTGTTTGAGGACCTGCCTGCCTTTTTTGGATCATCACTACCCAAAGAAGGACTTATGgGTGTGTTAGTAGAGTCACGACCACTCAACGGCTGCACTCCAATAGAACCTCCACCACCACTGCCCACATCTAGTGATCCCAACACGACCACTACTAAGTACATAGTCCTCATCCGACGCTATGACTGCAATTTTGATATCAAGGTGCTGCATGCACAGCAAGCTGGATTCAGTGCAGCCATTGTTCACAACATGTACTCAGAGACACTACTCAACATGAACTACAGCAATGaaACTATTGCAGAGGAGATTGAGATCCCCTCCGTATTCACCAGCTACTACGCCTCCCAAATTCTAAGGACTTTCATCATTCCTGAACATGGGGCCTATGTGATCCTCAAGCCGGAGTTTGCCTTCCCACTCTCATACTATCTCATCCCCTTCACTGGAATAGTGGGCATGATCATCCTTGTGATGGTTGTCATCCTGATTGTGCGCTGTGTGCAGTACAGGAAAAGAATGAGGAAATATAGGCTGACTAAGGAACAGCTGAAGAAGATCCCCATTCACAAGTTCACTAAAGGTGATGAATATGATGTTTGTGCTATTTGTCTGGATGAGTATGAAGAGGGTGACAGACTGCGAGTTTTGCCTTGCTCACACGCGTACCACAGCAAGTGTGTGGACCCCTGGCTTACAGGGACTAAGAAAACTTGCCCCGTGTGTAAACAACGCGTAACCCGACCTAATCCAGAGTATTCTGAGTCCGAGTCTGAGGATGATGGGGCATCTCGTGCAGATGAAGAGGGGGCAGAGGGTGAAGCTGACACCGAGCGCACCCCTCTGCTCCGCCCCTCCAACCCAGGCTCCCCTTCTGGCAACCCAGGGGCCTACTCTGCCACTGTCACCACGGTAACCACCGCCCAGTGCCTAGGCTCCCCTGTGCACAGCGACTCGCCCATCCTGGAGTACGAGGGCTACTACTCCCCTCAGGGGGAGTCAGACTCTGATACCGAGGAAGAGGGGATGGACTCCCATCCCTCAGATGATGACACTGCCCAGCTCATTGTTAGGGGTGCAGTGGGGGTCTGAAAGCCTGGAGGGAGCTGAGATAAAATTACTTTGTGTTAGCTCAATAGGGTCAGGCTTGTCCCCGCAGGGTGTTTTTAAATGGTTTATGGAGTTGTGGCTATGGAGTTGTCTCAGCCATAGACTTTCTAGAACACTATTGTCACTTTGGTTACGTTGAACAGATTTACATATTTTCTCCAACTTAGACTCAATGTTGCTAGCTCTAAGATGTTAATATTTAGCCAAGATTCTGTTATGTTTTAGCAGTTCTGTCTTCAACATGAGGCACACATTGATAAGTACAGTAAATCAGTTCAAACATTTAGCTTTGAGTCTTTGCCAGTGAACTATAACCCCGCCACCCATCCCTAAAACTTAAGATTTTCACAAAATGAATCAACTGACAGGTAGTCTAAATCTTAACTAGCAGTATTTagttgaatacatttttttcaatGCACTACTTGACAATTGACATAccccaaattcttattttcaattaacaTATTGTACAAGGAGATAACCCACCTGAGATTATTTTTGTAGTTACTGAGTAGACTCAAGTCATCCACCAGTTGTTCTTCATATTTCTTCAACATTTTTAttctagtattacattgttattgcattgttgggttttgagtttgaaAGAAAGGCAtgtcactgtacttgtgcatgtgacattaaaacgtAAAACTTGAGTTGAAAGGAAACTACAGCGCTGCAGTCTCATTAATAAGATCTCTTCCCCATGCTAGTAGTATACCTGTATGCATCTCTGTAACGGGTTTCTGTCATTATATTGGTTAAGTGGGAGTATAGTTTACTCTATGGGGTGTTTCTCTGTCAGATGGGTTTATGGAGTTTTTGGACTGTTAATTTGTTATGCATCATTGACCAGTAATTGGGGAATGCCATAggagattatttattttttacttcactgtaatacatttttattatCCAGCATTGTTTCTTTGAACTTCTTTTACTCCTTTTAAAAGTTCAGAATTTGTCCAGTTTGATTTTATTTCAGCCTCTTCTATGATCGATCGTTCAGAGTTCTTCATGAtgttgtaatgtttgtttgttttctttctgtttttgtttttgacaTAACTGGTGATATGGTCCGTCTAAAAGAGATTCCATCTGCTCTCTGAAGAAGTTGAACAAACTCAGGAATAGGAACATATTCACTCTGTATGGAAATTACATTTCAGAATTCTTCATGGATATTCTTGTTTTATTTTCATACTGAATGAACATATTACACCATAGAATATAGCAAACCATCGGCACAATTCTTTCCAGTTTTGTCAGTCTCCTCACATCAGCCTTTCTCTACCTGTAGAAGTACAGATTTATTGTTAGGAGAATAGTGTGTATCTTAAGGGACTATTACtcatgtaattttttttttttttttttttttttttttcctgtgtAGCCTtttatacacagtacacactTTAGGAACAAGGTAGGCAACCATGTATATGATTATATGTCCATGCATCAAAATACACTCTGTTTAGATATTTTTTCCCCCTGAAAATAGCAGGAGAAGGGGGATGCCAGTACTTACACATTGTTACATATTCACGTTGGTCTCCACCTCTGCTATGAATCTATTGCTTTCTGTATGCAATTTCTTGATTGTCTGTGTACATTGCATATTCTAGTATTCCTAGGATGGCAATTATTTGTTGACAAATTATATGTTGACATCTCCTCCCATATGACATGATGTATGATTTAGCTTTTGAGTAGAATGTGCCTAATTTCAGTCAGAATGTATCTTTATTGCTGATAAATGATCAATGTTCACATACCACAATTTAATTTGTAGatgtatttttaaaaacattttggaaATCAAATGAAAGACTTATGTCAATGTACCTTTAAGCACAAGCAAAACGCTAGTAACAATAGTAATGGAACTGGCTATAAGCTTCTGTGGCGCTCATGCCATTGGGACCAAGTTTGAAGTGTTATGTAACACTTTCATTTATTATGTCATTGTCGGTTAGTCCTTGACTGCTGCATTTACATAACCTCCTTTCTCACTTCTGAAGATTTATATAGTCTTGTGACATTTTATGTTGGTCCCATAAAAATAAATGACATATTTTGGG
>XM_021618217.2
TTTTTCTATCTGTGACCGTTCACCTAGCCGCAGGATATTATTATACAGGAAATGCATAAATCTTTAGCATAGTATTTTCATAAGAGTGGCTTTAGGCACCAAACAATATAGTTATACACTATTATAACGTATCTAGCTGTCTTTCCAATTATACTTTAGTTTGCTAGCTGTGGCATACACCGTTAGCTACTTGAGTCTAAAAAATTCGAAGCTTTTAACTAGTTAAATTAGTTCGCTAAATCTAGCCTCTGGAACCGGGAAGGAGAGGACAAAACAACAAGGCACTGGACTGGCTGAACTTTCCAGcttcctggctctactcatcccattctccagacagacagtgaggtagGATGTTGGGTCTGTGGTGCATGGGTGCCCGACTGGGCGTTCTCACTCTGGCGCTGTGCTGTACACTGGCTCCCTTACCTGCACACGCGTACATCTATGCTCATTACAGCAATATGACCAACATGTTGTTTGAGGACCTGCCTGCCTTTTTTGGATCATCACTACCCAAAGAAGGACTTATGgGTGTGTTAGTAGAGTCACGACCACTCAACGGCTGCACTCCAATAGAACCTCCACCACCACTGCCCACATCTAGTGATCCCAACACGACCACTACTAAGTACATAGTCCTCATCCGACGCTATGACTGCAATTTTGATATCAAGGTGCTGCATGCACAGCAAGCTGGATTCAGTGCAGCCATTGTTCACAACATGTACTCAGAGACACTACTCAACATGAACTACAGCAATGaaACTATTGCAGAGGAGATTGAGATCCCCTCCGTATTCACCAGCTACTACGCCTCCCAAATTCTAAGGACTTTCATCATTCCTGAACATGGGGCCTATGTGATCCTCAAGCCGGAGTTTGCCTTCCCACTCTCATACTATCTCATCCCCTTCACTGGAATAGTGGGCATGATCATCCTTGTGATGGTTGTCATCCTGATTGTGCGCTGTGTGCAGTACAGGAAAAGAATGAGGAAATATAGGCTGACTAAGGAACAGCTGAAGAAGATCCCCATTCACAAGTTCACTAAAGGTGATGAATATGATGTTTGTGCTATTTGTCTGGATGAGTATGAAGAGGGTGACAGACTGCGAGTTTTGCCTTGCTCACACGCGTACCACAGCAAGTGTGTGGACCCCTGGCTTACAGGGACTAAGAAAACTTGCCCCGTGTGTAAACAACGCGTAACCCGACCTAATCCAGAGTATTCTGAGTCCGAGTCTGAGGATGATGGGGCATCTCGTGCAGATGAAGAGGGGGCAGAGGGTGAAGCTGACACCGAGCGCACCCCTCTGCTCCGCCCCTCCAACCCAGGCTCCCCTTCTGGCAACCCAGGGGCCTACTCTGCCACTGTCACCACGGTAACCACCGCCCAGTGCCTAGGCTCCCCTGTGCACAGCGACTCGCCCATCCTGGAGTACGAGGGCTACTACTCCCCTCAGGGGGAGTCAGACTCTGATACCGAGGAAGAGGGGATGGACTCCCATCCCTCAGATGATGACACTGCCCAGCTCATTGTTAGGGGTGCAGTGGGGGTCTGAAAGCCTGGAGGGAGCTGAGATAAAATTACTTTGTGTTAGCTCAATAGGGTCAGGCTTGTCCCCGCAGGGTGTTTTTAAATGGTTTATGGAGTTGTGGCTATGGAGTTGTCTCAGCCATAGACTTTCTAGAACACTATTGTCACTTTGGTTACGTTGAACAGATTTACATATTTTCTCCAACTTAGACTCAATGTTGCTAGCTCTAAGATGTTAATATTTAGCCAAGATTCTGTTATGTTTTAGCAGTTCTGTCTTCAACATGAGGCACACATTGATAAGTACAGTAAATCAGTTCAAACATTTAGCTTTGAGTCTTTGCCAGTGAACTATAACCCCGCCACCCATCCCTAAAACTTAAGATTTTCACAAAATGAATCAACTGACAGGTAGTCTAAATCTTAACTAGCAGTATTTagttgaatacatttttttcaatGCACTACTTGACAATTGACATAccccaaattcttattttcaattaacaTATTGTACAAGGAGATAACCCACCTGAGATTATTTTTGTAGTTACTGAGTAGACTCAAGTCATCCACCAGTTGTTCTTCATATTTCTTCAACATTTTTAttctagtattacattgttattgcattgttgggttttgagtttgaaAGAAAGGCAtgtcactgtacttgtgcatgtgacattaaaacgtAAAACTTGAGTTGAAAGGAAACTACAGCGCTGCAGTCTCATTAATAAGATCTCTTCCCCATGCTAGTAGTATACCTGTATGCATCTCTGTAACGGGTTTCTGTCATTATATTGGTTAAGTGGGAGTATAGTTTACTCTATGGGGTGTTTCTCTGTCAGATGGGTTTATGGAGTTTTTGGACTGTTAATTTGTTATGCATCATTGACCAGTAATTGGGGAATGCCATAggagattatttattttttacttcactgtaatacatttttattatCCAGCATTGTTTCTTTGAACTTCTTTTACTCCTTTTAAAAGTTCAGAATTTGTCCAGTTTGATTTTATTTCAGCCTCTTCTATGATCGATCGTTCAGAGTTCTTCATGAtgttgtaatgtttgtttgttttctttctgtttttgtttttgacaTAACTGGTGATATGGTCCGTCTAAAAGAGATTCCATCTGCTCTCTGAAGAAGTTGAACAAACTCAGGAATAGGAACATATTCACTCTGTATGGAAATTACATTTCAGAATTCTTCATGGATATTCTTGTTTTATTTTCATACTGAATGAACATATTACACCATAGAATATAGCAAACCATCGGCACAATTCTTTCCAGTTTTGTCAGTCTCCTCACATCAGCCTTTCTCTACCTGTAGAAGTACAGATTTATTGTTAGGAGAATAGTGTGTATCTTAAGGGACTATTACtcatgtaattttttttttttttttttttttttttttcctgtgtAGCCTtttatacacagtacacactTTAGGAACAAGGTAGGCAACCATGTATATGATTATATGTCCATGCATCAAAATACACTCTGTTTAGATATTTTTTCCCCCTGAAAATAGCAGGAGAAGGGGGATGCCAGTACTTACACATTGTTACATATTCACGTTGGTCTCCACCTCTGCTATGAATCTATTGCTTTCTGTATGCAATTTCTTGATTGTCTGTGTACATTGCATATTCTAGTATTCCTAGGATGGCAATTATTTGTTGACAAATTATATGTTGACATCTCCTCCCATATGACATGATGTATGATTTAGCTTTTGAGTAGAATGTGCCTAATTTCAGTCAGAATGTATCTTTATTGCTGATAAATGATCAATGTTCACATACCACAATTTAATTTGTAGatgtatttttaaaaacattttggaaATCAAATGAAAGACTTATGTCAATGTACCTTTAAGCACAAGCAAAACGCTAGTAACAATAGTAATGGAACTGGCTATAAGCTTCTGTGGCGCTCATGCCATTGGGACCAAGTTTGAAGTGTTATGTAACACTTTCATTTATTATGTCATTGTCGGTTAGTCCTTGACTGCTGCATTTACATAACCTCCTTTCTCACTTCTGAAGATTTATATAGTCTTGTGACATTTTATGTTGGTCCCATAAAAATAAATGACATATTTTGGG

Function

NR:

description
E3 ubiquitin-protein ligase RNF167-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K15706 RNF167; E3 ubiquitin-protein ligase RNF167

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618218.2 False 4055 mRNA 0.41 10 35344593 35357587
XM_021618217.2 True 3685 mRNA 0.41 10 35344593 35357905

Neighbor

gene id symbol gene type direction distance location
LOC110533734 LOC106603397 coding downstream 3279 35330732 ~ 35341314 (-)
LOC110533732 LOC106603400 coding downstream 52138 35250655 ~ 35292455 (-)
LOC110533731 LOC106603606 coding downstream 98733 35211817 ~ 35245860 (-)
LOC110534897 LOC106603603 coding downstream 172451 35163598 ~ 35172142 (-)
LOC118966630 NA coding downstream 184540 35159544 ~ 35160053 (-)
defbl1 NA coding upstream 12209 35367515 ~ 35370773 (-)
LOC110533736 LOC106603396 coding upstream 73719 35431624 ~ 35483763 (-)
LOC110533740 rn121 coding upstream 148273 35506178 ~ 35517246 (-)
LOC110533741 rir1 coding upstream 170126 35528031 ~ 35536120 (-)
LOC118937084 NA coding upstream 170869 35528774 ~ 35528891 (-)
G882535 NA non-coding downstream 23898 35318611 ~ 35320695 (-)
G882580 NA non-coding downstream 38607 35305255 ~ 35305986 (-)
G882579 NA non-coding downstream 39530 35304802 ~ 35305063 (-)
G882573 NA non-coding downstream 46978 35297382 ~ 35297615 (-)
G882540 NA non-coding downstream 110729 35227183 ~ 35233864 (-)
G882605 NA non-coding upstream 23518 35381423 ~ 35406422 (-)
G882623 NA non-coding upstream 56338 35414243 ~ 35414548 (-)
G882628 NA non-coding upstream 65692 35423597 ~ 35423825 (-)
G882632 NA non-coding upstream 70508 35428413 ~ 35428710 (-)
G882539 NA other downstream 22887 35320814 ~ 35321706 (-)
G882578 NA other downstream 40538 35302914 ~ 35304055 (-)
LOC110533718 LOC106603592 other downstream 450665 34891059 ~ 34893957 (-)
LOC110534894 gpr119 other downstream 745918 34597247 ~ 34599007 (-)
LOC110533714 rbmx2 other downstream 748411 34589717 ~ 34596263 (-)
G882631 NA other upstream 69344 35427249 ~ 35428208 (-)
G882971 rb1 other upstream 240412 35598317 ~ 35599085 (-)
G883128 NA other upstream 522619 35880524 ~ 35880951 (-)
G883753 NA other upstream 1032092 36389997 ~ 36390914 (-)
G883754 NA other upstream 1033198 36391103 ~ 36392527 (-)

Expression


Co-expression Network