nlrc3l1 (LOC106603395)


Basic Information

Item Value
gene id nlrc3l1
gene name LOC106603395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35496200 ~ 35500355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618226.2
TCTGTGATAATACTTTACTGTTCCTGTTTGTCGGAGTCAAAAGTTACTGCGGCCCTGTCTGTGGTCTATATTTAGCATTTTAGCCGGGAACATTTGCCGTTTATTAGCTCTAGGGTTATGTTACGTTTATTTTGAACGCGTACACATTATGCTTTAGTAAAGTGAATCGCCATAAATGAGGCAAACAGGTGAATTTAGTAGgccagaggtttcaaaacaagcTCGCCCGGGACAGAAAACTTCGATATTTTCAGCTTTTTTTCTTAGTCTTCTGTCTGGCAACATTCAAGTAGCCATTGACGTCAGACTTTGAACTGTGACCCGGAACCTGTACACCAGAGGTCCTCCAGGATGGCTGGGCGAGGCTCTGACACGATGGAGCATGATGGAGGGGAAACTATATCAGATGTCAGTTTTCCCTTGGGAGAGGGTGTGTCTGGCCGCGGAAGAAGTACAATCTCTATGtctgatgagggagaggaggcttTCTATGTGCCTGAGAGGAGACCCTCCCTGGACCTGGGAGATGGCCTGAGACCCATGGACACTACTCACTGGCATGATGTGGAAAGGGCTCAATCCCCGGTCCACAGCTACAATTCGGTAAACAGTGATACACAATTCTGGCCATCTGATGAACTGGATGAAGAAACTGAGCTGTCTGCTACTAGAGTCCAGCTGGAAAGAACAGAGTCTTACTCCAGTGGCTACTCCGTGGACAGTGACTGTGAGACCAGAACCAGGAAGTCTCAAGACGCTGCACCTAAAGAAGAGGGTCCTGCAGTGGAACCTCCAAGACCAGAGCTGATCAAAAACCCAGACGAGAAGAGGCACCCTGCCCTGACTGTAGACTTCACCTTCAAGGCCATCAGGAAGACACTGGAGAAACTGGGGAAGGATGATTTGAGGATATTTAAGATCACGCTGTGGAAGCGCTACCCAGAGTCATTCAGCTCTCCTCCCCAGGGCATGGACATGGTGGACCTGGTGGATAGACTACTGGAGTTTTATGACCTAGAGGTGGCCCTGCAGCTCACCAAGGCCCTGCTGAAGGACATGGGCCTCAAACGCCTGGATGCCTACATCACGGACCTCTGCAAGAAAAATGAGGTGCGTTATGAGCTGAGAGGCACTCTGTTGAGGAAGTATAGCTGGATGTGTGAGGGTGTTGCCCAGCAGGGAGAGCATAAGGCCTTTGAAAGTATCTTTAATGAGCTCTATATAACAGACCGAGGCAATGCTGGGCCCAACATCGAGCACGAGGTCAGAAAGATCGACAAGCTGTCCACCAATCGCAAGGAAGAGAAGCGGATCACCTGTAGCCAGATCTTTGACCCCGATGTGATTTATGAGAAGCATGTGAGTCATATAGTGACCAACGGCATCGCCGGGGTAGGGAAGTCTATGGCCGTACAGAAGTTCATCATGGACTGGGCAGAGGAGCGCAAGCACAATCATGTCTACTTCCTGTTCCCACTGCCCTTCAAAGAGCTCAACCTCATGCTGAAACTGAAGATTAGCCTCCTGGAGATCGTCCACACTCTCTACCCCGAGACCAAGGCGTTGCCCACCTTCGAGTGTGACGAAGGCAAGGTCATGTTCATCTGTGACGGGCTGGACGAGTATGCACATTCCCTGGACTTCCACCGCACCGAGACTTGGTGTGACAGCACTGAACCAGCCGCCATGCACGTGGTGGTAACCAACCTGATTAGGGGCAACCTGCTCCCCTCGTCTCTCCTCTGGATCATCTCTCGCCCCCTCACCTCCAGTCGGCTGCCCGCAGAGTCTGTGCACCAGGTGTTGGAGGTCCGTGGCTTCACCAACGAACAGAAGGAAGAGTACTTCAGAAGGAGGTTTCAGGACCCGGCGCAGGCCGATAAGGTGATTGCCCACCTGACCTCCTGCAAGACCCTCCACATCATGTGCCATCTGCCCATGTTCTGCTGTGTGGTGCGGGAGGTTTTCCAGCAAACGTTTAGGGAGAAGGGGCCGGATGCAGAGCTGCCCAAAGGGCTGACCCTGATGTACACTCGCCTGCTGCTGGTGCACCTGCATGTGCGTGGTGCCAGGGGCTCAGCCTCCCGCACCCCGGAAGAGGAGAGGGACTTCCTGATGAACCTGGGCAAACTAGCCTTTACAATGCTGGAGAAAaaccagatggtcattggcaaggCCACCTGGAAGGACTGCGGCGTGGATGTCGCTGAGGCTGTCACCAATAGTGGCCTGTGCATTGAGTTCCTGATTGAGCAGTTTGTCATGTACCAGGAGAGGATCCAGACCTTCATCCACCCCACCATCCAAGAATACCTGGCTGCCCTCTACGTGTTCCTCACCTGGAGGTGTACGGGGCAGAACGTCCTGCAGCAGCCACGGAATAGCAAGTTCTCACGCATATTCAAGGACCCCGGGCTGCTGGACATGCACCGCAGTGCTATAGAGAGAAGCTTACAGAGCCCCGATGGAAACCTGGATGTCTTCCTGCGCTTCCTGTTGGGCATGGCACAGACAGCCAATCAGGAGCTGCTACAACGCTTCCTACCCGATAATAACAAATGCTCGTCAGCCTCTGAGGAGACGGCCGCCATTATCAGGAAGAAGATTAAAGAGAACCACTACCCTGACAGGAACGCCAACCTGCAGTGCTGCCTGGACGAGCTTGGTGTTGGGGCTGAAGCTCCCAGACGCAGCCGCTCAAACTCTGTGAAGAACCAATGACTGACAATACTCTGACTACAGTATTTATAAAGATGTATATATTAGGTTTGAAATATGGGTTGTATAGTTAGACAAACTTTTATAAGGGAATTGGGGAAGAAAGATATGGATACTTCAGGGTTGCTTTGTAACAATACTCAACTGTGGTAGTATTGTGGAAATATGTCATGAGAAGTAGCCACAAGGTGGCAGTAGcattacactactatactactgagACACAGAAGAGTGAAAGGGATGTGTGACAAATTACATATTCATAGGCAGTCACATGTATTGACTGTATACTTAATATAACATTGTGATGATGTTTTAAACCAGGTATGTGCAActgatgggggtggggggtcacAAAATCCTAACTCACG

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618226.2 True 3089 mRNA 0.51 7 35496200 35500355

Neighbor

gene id symbol gene type direction distance location
LOC110534900 LOC106603243 coding upstream 85941 35409136 ~ 35410259 (+)
LOC110534898 LOC106603243 coding upstream 110550 35384470 ~ 35385650 (+)
LOC118966749 NA coding upstream 133660 35358041 ~ 35362540 (+)
mogat3b LOC106603399 coding upstream 176774 35307753 ~ 35321801 (+)
gltpd2 LOC106603604 coding upstream 292418 35197951 ~ 35203782 (+)
zgc:110224 LOC106603393 coding downstream 16930 35517285 ~ 35521595 (+)
slc6a7 sc6a7 coding downstream 48484 35548839 ~ 35557257 (+)
rb1 rb1 coding downstream 57452 35557807 ~ 35599957 (+)
LOC110533745 LOC106603391 coding downstream 127253 35627608 ~ 35661459 (+)
LOC110533748 prps1 coding downstream 173846 35674201 ~ 35686573 (+)
G882626 NA non-coding upstream 75753 35420231 ~ 35420447 (+)
G882617 NA non-coding upstream 87127 35408795 ~ 35409073 (+)
G882615 NA non-coding upstream 89330 35406627 ~ 35406870 (+)
G882353 NA non-coding upstream 152973 35342975 ~ 35343227 (+)
G882352 NA non-coding upstream 153514 35342115 ~ 35342686 (+)
G882700 rir1 non-coding downstream 29611 35529966 ~ 35532747 (+)
G882702 NA non-coding downstream 37111 35537466 ~ 35649469 (+)
G882775 NA non-coding downstream 171542 35671897 ~ 35672417 (+)
G882789 NA non-coding downstream 236442 35736797 ~ 35737299 (+)
G882828 NA non-coding downstream 317713 35818068 ~ 35869469 (+)
G882624 NA other upstream 79962 35414975 ~ 35416238 (+)
G882300 NA other upstream 260975 35225097 ~ 35264333 (+)
G882265 NA other upstream 332694 35161348 ~ 35163506 (+)
G882225 NA other upstream 386809 35107462 ~ 35109391 (+)
G883473 om-i other downstream 792959 36292302 ~ 36295572 (+)
LOC110533788 NA other downstream 1299030 36799376 ~ 36801589 (+)
G883966 NA other downstream 1349291 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 3255154 38755443 ~ 38815017 (+)

Expression


Co-expression Network