LOC110533745 (LOC106603391)


Basic Information

Item Value
gene id LOC110533745
gene name LOC106603391
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35627608 ~ 35661459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990133.1
TGACACGAGCCTGCCGTCGTTGTCAGGGACAGGGTGCATCTGGGAAAAAAATATATGGCATAACAATAGCAGCATCCAGTATCGGTATACATGAATCCAGGGAGCCTAATAAGAAATGAACATGGCCATGGCCATATAAAACATGACCTACACATGACACATGGAATGGTcaagatattttgtttatttccTGGATTACAAAGAAGACTAGAATAAAATGGAGTGGTAGGGGGACCGAGGCGCGCTGTCTCCATCATAGGGAGGCGCGTCCACCTGCTGATACAGGGAGTCCGGGCTTGGGAAAAACATGGTGAGGTTGCTGCATAGAGGAGAAGATACAGTTTCCATCTGTCAAATAAACAACTGTGTAATTGAAATGCTGGCGACGGGAAAAGCGCAGCCGGTGTGAATATAGAGGTTGGATAGTGGTAATAATGTAAGGGACAAGAACCACGCTAAATTGATGGATGTTTTTCAAGAACCCAACTTTGCTGTGCTGGCTTCAAACCTGGAACAGATCAACAAAGGGGACGAGAATGAATCACACAACCAGGACAGTTCTTTGAAGCTAGACAGTCCCGACACCACTCCTAAAGCCAATCTACCAAAAGGAGGCCCTGAGAGTGAGAGGACCTCACTTAGCCCATCCTCACCTCTCAGCCCAACAGAGACCCCTGAGCCCAGCACCACTACTGCTGATGACTCCTCCTCCACTCACACcatctccctcacctcctcctgctccaccaAGTTGGTGAGTCACTGGGCTCTTCCAGAGGACTGTAGTGACAAGGCTGCCTTCACCATGATGGAGACAGGGAGTGTCTCGGCCCTGTCTGGGGGGGACTGCCTTATGCCACAGAGCCGCACCTGCCTGGGCTGCTTCATTGAGAGCAAGGACGCTACAGAGCCTGAGCCAGGGCTGGACCTGGGCCGGGACTATGAcccctgtcctgtctcctgtcctgACATGGCCATGCAGTGCATGAGTTCTGGTATCCGCTACGGGGATCAGCTACTCTCAGACCAGCTCCTCAGCTACCCAGAGCACAAGGTTAGAGCGGTGGAGAAGACAGATGAGGAGAAGTCAGCGGAGGACAGTGACTCGGAGGATGCCACGTCAAAGAGTATCTACGAAGGCCTGCTCCTGGACAAGTGCAACGGTGAGGAGGCTCTGCTGGCCAACTCCAGCCAGGACTGGGGCTGCTTTGAGTCCTTTATCAGCGAGAGTAAGATCGAGCTGCTGGACCTCTGCTCTAAGAACGAGCTCTCTGTAAACCTCTTCTCAGAAGAGGACGTAGACAACTATATGTTTGATGATGAGGACTCCACCCTGGGCAGCGACGTGTGCTCGCTGAAGATCCGCTACGAGTCCTTCCAGGACAACGTCCGAGAGAAGACCAACACCATTCAGGAGGAAACCCAGTTCAACTTCTTCCCAAGTGTCGTCGCcaaaaaggagggagagggagcagtgaAGAAGGAAGCTGAAGTGCCGCAGGTGAATGGAGAGAAGGTCGAAGTCTGGGCGGCTGGAGAAAAGGTTGACaaaaacaacagcagcagctctGCTGAAGTGATGCCCAGTGTCAGTCCAGAGAGCAGCTACCTGTTTGACTTCAACAACTCCACAGAGGACTCTGGAGAGTACAGCGATGACAGCTCCTGTACTGGATCCTCCCTTGACACCTGCCAGACCAAACGGAAACACTGCTTCCTCTCCAGGGAGAACTCCAGCTCCTCCAGTCAGCTGAGCTATGGGCTGAGGTCCAAGAGGAAAGTCCGATACAGCGACGACTATCTGTACGACGTGGATTCTATCGAGAGCGAGAAGAACACGGAGAAAAAGGAGAAGCAGCCGGTGGGTCCAAAAAAAGAGGAGGATGACGACTGGTGTCCAAAGAAGAGGAGAAAATCCTCACGAAAAGAGCCTCCGGTGATAATCAAATACATCATCATAAACCGATTTAAAGGGGAGAAGCACATGTTAGTAAAGCTGGGAAAAATTGACACATCAGAGACAACAGTAAGCTTAAGTAAGGACTTAGTTCATAAGTACCATAGAATGGCCCCTCTGAAAGACTACTGGCAAAAGAGGCGCCAGGAAATGCAGGAGCAGCGCAGGCTGGCTGCTGGTGATAAAAACACATTTCCGAATGGCTGCAGGCGTTCCCTTAATTCTAGCCTGACAAAACGAAAATACAGGATTGCAAATAGAGTCCGGATTCAAAGAATTCACACTGTAGAGCTCTCGCCAAACCACGCCGATCACAAGCAAGAGGTGCGAGCAGCTGAGGATCAGGCTGCCTGTACAGATATGgcatcaataacaacaacaacctccgACTGTGCTGCTAGATTAGACCAAGGAAGTGTGACAGGAAAAAGCAGATCgctagagagggaggggaaaagacTTGGAAATAAGATTTTGAAACTAAGGAAATTTAAAAGCGAGGCCAGACTGAAGTCGAAAAAAATGACAGAGGCTCAGCAGGAGGATGGTAAAACTGTGGTTCACCTACATGAGGTTGGCCCACTATCCCCAAGTCAGCACCCTGACATAGTTTACTCTAAAGCAGGTAGCCCCCAGCTTTGTGATGACTCTACTGTCAGTGTCGACCCCACTGAAAAGTCTACTTTTACACCAGCCCCCTGCTCCTCTTCCAGCACAATGACCCATCCTGTAAATGTGAATAGTGGTCTGCCTGTCATCCCCGGAGGCTACCTACAGACATTACTAGATGCCTCTGACTCATCCAGTAACACTGGACTGTCATATTactcccagcagcagcagcagcagaatcCCCGACAACAGTTTCCCCATGGGCTCTACCAGGAAGAGAATCCATTCACTAACCTACAGCTGGCCCAGAGCTGTGTTCTATCTCCTCCCTCAGAGTCCGAGCTCCAACAATCCCCCTCTAACTCCAATCAGATGGAGCCAAACTTCACTCACATATCATGGCAGTCTGGAGGTGAACAGCTACCATTTACATCTGACATTCCACCTGAATCTGCTGGCTTTTCCAACACCATGCCTTTGCCAATGACAAACAACTTGCCCTTGTCAGGATATAGTCAAGTCAATGTAGATGGTAACAGACTGCTGAATGATAAGGCACATTTACCTGAAGAGCCACCAGGACCAGACTCAACCCTACAGGCCAGCCGGTCAGCTGAAGAGGAACAGGTGCAGTTCCATATAGTCACTCTAAACACAGAGAACAGCAGGCTGGCCAGctatgactctatgggttcactgTCGGCCTCCTCTAGCAACTACAGCACTATGAGTCACAAGTCCTGTGAGAAGGAGAGTGAAGAGGATGTGAATGAGAACTTCTTGGCCCACTGTAGTCCCAAACTGGTGATCCAGCAAAGTACTGATGAAATCACTCCCCTTAGGGAGTCCACAGACCTACTGGACATCTCCAACTTCACCCCCGATAAGTTCAGGCACTCGTCGTTGTCAGAGATGTCGCCACCCGACACACCAAATCTCTCCCCACAGGTGATGGGTCCAGAAATGAGGGAAAGCCTAGGAAAGGCCAGGGAGTTtcaaggagagacaggagacatgaCTCTCTCAACTACACCTGATGGGACTAAGTGGGACTGTAATGTCCTGCCACAACAAAACCATGATGGCAGAGCGATAAACAATCATCAGTTCCAGTTCCATACTTTCAATGACAATGATGGCACAGGGTTAGGTGATAAGATTGACGGCACGGACGTCTTTGATGAGCAGGCTGAATCTATTGGAGACCGAACTAAAGGTCCCAAGTCAAAAAGGAAAACAACCAGTAAACAGAAAACCAAGACTCCAAGGGCCCCCAAGACAGAGAAGAACAAAGCCCCTAGACAGAATTCTCGATCATCCAAAAAGCTAAAAGCCCTGCTTGATGCAAAGGCAAAGGCGAAAGGTGAAGAAAGTGAAGGTCTTGCTGGACTGTCAGAAGACTGGCCTTTACTGGTGGAGCACGGTGGGGGCTGGGTAGACGgcggaaacaacaacaacagtgctGTGGATGACGACCAGCGAGAGTTTGAGGAGCCCTCCAACATCCTGTCCAACATAGTCTCTGGGATGGCAGAGGTCGAGAGGTTTATGAAGGTGTCCATCGAGCCACTATGGGACCCCATGTCTGGACTCTGTCAGCCTCCAGAGGCCAACAGCCTTAAAACTAAGACACTCAAAATCCTGGCGGGCACAACAGCTGACGTCAGGAAAAAGGGTGGTTATGCCACCTCCCCTGGGGCAGGAAGGGGCAGGAAGGCAACTGGCAGGGGAGCCAAAAACCAATCCAAGTTCATTCCTTCAAACCCCTtcttcccccctctcactctaGACTGCAACATGTTCAACAAGTCCAGCCTCGGTATACCTGGCATCTGTGGGCCCGCACACAAAAAAATGTACCGTCACAAAACCAGTGCAAAATTTGCTGGAGACGAAAACAATACAGGGAAGCGGGACTCGAGCAAGAATGTAGCTCTGATGGCCTCTTATGAGAAACTGAGGTAATATTTTGTAACAGTGGCTGCAAAATACGTCCCCCTCACTCTATTTCCTCCCGCCTCTTGCTCAGTTCCCTGGGTTCCCTTACTGCTCTCACTTTTTGACTTAAATCCAAGTGTTGCATGGCAAAGACATTAACCCTGACTACCCCACCTCCTTCTTTTACCCTGAAACAACTTGCATGTGAGCTTTTATTTGTTCTGGCAAAACTACCTATTGTGTGATTGATTGTCTCTAGCTTGACTGTGATTTCGAACTACCGTGGCTGCTTTTTGTTTCTGACTGCTGCTTGATTCACCTTTCTTGGTctttagtttgttttgttttttgttactTTAAGTTTGACTTTTGTATAATAAGAAAAATTGCCTTGAACCTGTTTTGAAAACCATTTTTGTGATACTTAATGGTTTGCTTTGTTTTTTCAATTCTCCATTTCAGCGGAACAGATTGCCCCTCCTTAACAATGTCAAAATTCAGTTTGTGGCTCTCCACAAATGTTTAAAATAACAGTTCAAAAGTTGTCCGTCCTTACATTTAGTCAATGGTTGCCTTCAGTGTACAAAGCGAGAGTGGAGTAGAGTTAGTCATGAGGGAACAATAGAAGTGTCCTATCATTACTGATACCACCCAGCCATTCCATTTGTGGATGTTTTACTGGTGTAGGAGAACTGTATCGCTGTTCTGCTGGGAACCAGACTTTTCAGAATAAAAAAGGGACATTTTTGTATTAACGATAAGACGACTTTCTCATACTGTCCTAATTTTCTTAATATCTTGAAATGGCATTATTTGTCATTGGCTTTTTGCCATGGtttggggagaggaggtgggagggtaAGTGGAGTAAGTACCCAGAATTGCAATTTGTTAATGCTATTGTACAGAGACATATGCACTATTTGCAGAATATGACGATAATTATAATTGTTAAAAATGGAATTATGTGCCAAACGTTGAACAAGTATCTGTATAAACATTTTCTATCTATATGTATATTGGCTGTTTCATGTTCTTtttgttagggttggggggtgggGGTTCTGGACTTCGGTGGCCGGTCGACATTCTAGAGAACTTACACTTCATTCCGTTTGCCAAGCACCTGCAGCTGACAGTGATACACCTTTTACCAAAATGCAAATGACTGTCTTTTCATTCATACATTCCTTTGAAATGATTGCCATCTGAACTCAAAATCAACAGCCAGCATGGCGATACAGAGAAGGGGATTAAATAGGTCCTGTGGAGAGCTGCCATAAGCTGTTTCAGCAACTAAAAAGTAGCACTGTGTCAATAAGAAATATTTATGCTCTAACAGGTTAGTTCAATCTTGAGGTTTGAATTTGTACTCTACTCAAGGTTAGTATACTGCTTCATGTAATCTCATGTAATCTCATGGATTCACCTACCACTGCACAAACATGGAGCTCTGTATTAGATTTCtacaatttatttcaatttacatGAATTGATACTATCCATCAGAGATTGAATATTTATTGTGAAGACCTTTTGTCTCTCGAAACCCCCCTTCCCCTCCATCTTCTCCAAGTTGCCAGGCTAGCCATTGAGACTGGGGATCAGGACAGGTGTCACCACCAGGTGGTGTGGAGTAGACTGCCTTATATCATCCCTGCCCATTGTTAATTGAATGTATTTGACTTCCTCTCCAACACGAGTTTTATATGATGTACCACTGTTGAGCTGCCTGTGAAAGGTGCTTGAAAGCAAATGAACTTACAGGTAACTGAAAAAAGGATGAAGAAATCCTCTGTGCCCTATTTATGAATGTATAAGATACTGTTATGTTTGATGTAATTCTGCCATGATTTTGACATTAATTAGAATTGTGTTTTGCCATTTTTGTTGAAAAGAATATTGAGCTTTATAAATATTgtcagagttgttgccagagggATTCCACAAGAACTCCTGACATCCTCCATGAATCTTGTATATTTTTCAGTGTGCCAATTTGTAAAATATTTTCTAAGTGTATATTTTTCTTAGAAAGTGTTGTGAAGTATTTGTAAATGTGGATACCCTTTTTTCGCCTTTATAGGCAGTGAAAGGGATGTATAATGACATGCCTTTGGTTTTAAAAACCAAAATAACAAACAtgacaaaaaaaattataaaaggagagagggaaaacacTGGGAAAAAAGTTGTAACATTTTGTCGGAAGTTTTGTAATCAGACCAATCTTGTTGTGGGAGTGTAGTGCTACTGTGTAAAAAGTATgataaaacaaaaagaaaaactGAAATAAAGACATATTTGTGATTTTATTGCTGTTTTATAAATCATTCTAGTATCATTTTGTTTTGTTGTAACTGTTGCAAAGGTTTAAATATTTGTGAACAAGCCTGTATGGTGACAATGTAATATTGGTAACTTGCTGAGTTTTGTAATAATGTTTATggaataaatataaaataaaaatgaggTTTTGATTCCTGCTTTCA

Function

NR:

description
protein KIAA2022-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990133.1 True 6999 mRNA 0.46 3 35627608 35661459

Neighbor

gene id symbol gene type direction distance location
rb1 rb1 coding upstream 27651 35557807 ~ 35599957 (+)
slc6a7 sc6a7 coding upstream 70351 35548839 ~ 35557257 (+)
zgc:110224 LOC106603393 coding upstream 106013 35517285 ~ 35521595 (+)
nlrc3l1 LOC106603395 coding upstream 127253 35496200 ~ 35500355 (+)
LOC110534900 LOC106603243 coding upstream 217349 35409136 ~ 35410259 (+)
LOC110533748 prps1 coding downstream 12742 35674201 ~ 35686573 (+)
LOC110533751 LOC106603389 coding downstream 35707 35697166 ~ 35704073 (+)
LOC110534918 cchcr1 coding downstream 203656 35865115 ~ 35872210 (+)
LOC110533760 LOC106603380 coding downstream 225676 35887135 ~ 35989671 (+)
LOC110533766 LOC106603376 coding downstream 464621 36126080 ~ 36138679 (+)
G882700 rir1 non-coding upstream 94861 35529966 ~ 35532747 (+)
G882626 NA non-coding upstream 207161 35420231 ~ 35420447 (+)
G882617 NA non-coding upstream 218535 35408795 ~ 35409073 (+)
G882615 NA non-coding upstream 220738 35406627 ~ 35406870 (+)
G882353 NA non-coding upstream 284381 35342975 ~ 35343227 (+)
G882775 NA non-coding downstream 10438 35671897 ~ 35672417 (+)
G882789 NA non-coding downstream 75338 35736797 ~ 35737299 (+)
G882828 NA non-coding downstream 156609 35818068 ~ 35869469 (+)
G883158 NA non-coding downstream 241361 35902820 ~ 35903134 (+)
G882624 NA other upstream 211370 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 305807 35307753 ~ 35321801 (+)
G882300 NA other upstream 392383 35225097 ~ 35264333 (+)
G882265 NA other upstream 464102 35161348 ~ 35163506 (+)
G882225 NA other upstream 518217 35107462 ~ 35109391 (+)
G883473 om-i other downstream 631855 36292302 ~ 36295572 (+)
LOC110533788 NA other downstream 1137926 36799376 ~ 36801589 (+)
G883966 NA other downstream 1188187 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 3094050 38755443 ~ 38815017 (+)

Expression


Co-expression Network