LOC110533099 (pde2a)


Basic Information

Item Value
gene id LOC110533099
gene name pde2a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36141669 ~ 36183062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990171.1
gttagAACGAGAGAGAAGCCTGGAGCATGCACAGAAATGTGTAGGCTTGTTTATGTACTGAGACTGTCTCCACTTACTCTGACAACCAGGAGAGTAATAGATGAAGAGAGCCAAAGAGACTGATAGAAAGATATTATTAGTGGCTGAAGGACAGAGACAAATAGAAAACgaaacacagagataaagaaaaagagacagagagataagaggaagCAATAGAAACACAGGCATTATGCTGCGGTGGGTTCTTATTGCCCTGTTTCGCTTCTTCAGGGGAGCAGGACGGCAGGTGTTCCCGccaatggaggagagaggggcgtACTCAAACTCCGTACAGGATGAATTGCTCCGACTGGCCTCAGTCACAGACTCCTCTTCCCTGCGGGATGCCATCAGAAAGGCTCTCCAGGCTGTCCTTTCTGAAGTGGACAGTGTATACGTCTATCTATTAGATGCAGAGACAGGATGCTTGTGGTGTGAAGAACCACCTCATGAGCTACAGAAGGAGGGGAAACTCAGGAATGTGGTTGTCCTGCAGAGGAGAGTACAGTGTGAGGGTCTTCCTTCCTCAGAGCTGcaggagcaacagagagagagactaacagaACCACTGCAGCAGGACAAaagagTGTTGATCATTCCAATTCTGGACCGGGACCAAGGAGTAGCTACCGCCCTCCTCTTGGTTTGCTGTACACTGCCCACTATAGCTCAGGAACAAAGCCTTGATGTCCTGGAGAAACATGTCACCATAGCCTGTAAGAGAGTCCAGGCTTTGCAGGGCCAAAGGCTCacccaggggtcagaggtcaacaGGACACCATTTCTCTCCCTGAACAGGAGGACAACACCTGATGTGGACTACAGTGCACTGGATCATCAGATCCTGAGGCTTTGCGGAGAGTTGTATGACCTGGATGCTGCCTCTCTCCAACTAAAAGTCATTCGTTATCTGGAGGAGCAGACTCAATCATTGTGCTGCTGTTTACTTCTGGTATCAGAGGATAACCAACAGCTGTTCTGtcagGTAGTTGGAGACACGGTTCTGAAGGCAGAGATCAGTTTCCCACTGACGTTTGGCCACCTTGGTCAGGctgtggagaagaggaagagcacCTCCCTGCAAGACGTCAATCCAGAGGAACACCAGCAGCTGAACAGCACTCTGGGATTTGAAGttctctctatgctgtgtgttcCTGTTGAGTGTCGGGCCACCACCAAGGTTGTGGCCCTCGCCTGTGCCTTCAACAAAAAAGGAGCAGACAGACACACAGAGCTGGATGAACACATAGTGCAGCACTGTTTCCGCTACACATCCTCAGTACTGACCAGCACACTGGCCTTCCAGAAGGAACAGAGACTGAAGTATGAATGTCAGGCACTGCTTCAGGTCGCCAAAAACCTCTTCACACATTTGGATGATGTATCAGTCCTGCTGAAAGAGATTATTGCAGAAGCCAGGAGTCTCACCAGTGCAGAAATTTGTTCTGTGTTCCTGTTGGACAGTGTCAGCCATGAACTAGTTGCCAAGGTGTTTAATGGAGGAGTGGTTATCGATGAGGAGACAGAGCTGCGTATCCCTGCTGACCAGGGCATAGCAGGCCATGTGGCCACCACAGGGAAGATCCTCAACATCACAGATGCCTACTCCCACCCTCTCTTCTACCGTGCCGTGGACGACAGCACAGGCTTCAGAACACGCAACATCCTCTGCTTCCCCATAAAGGACGAACATGgagaagTGATTGGCGTGGCTGAGCTGGTCAACAAGACGAATGGACCATGGTTCACCCGTCTGGATGAGGACTTGGCCACAGCCTTCTCCATATACTGTGGCATCAGCATCGCTCATTCCCTCCTGTATAAGAGGGTCGATGAAGCACAGTTTAGGAGTCAGCTGGCCAATGAGATGATGAAATACCACATGATGGTGTCAGATGAGGAAGTGACCCGGCTACTGACTGTGGGCATCCAGGCTGTAGGGGAAATACACCCCAGCTTCTCCAGCTTCACCTACACACCTCGCTCCCTGTCAGACGATAGCACACCCACAgccgtgatCAGCATGTTTGAGGACATGGGCTTCATAAACACCTACAAGATCAACATGAACACGCTGGCCAGGTTTTgtctgatggtgaagagaggctACAGGGATCCTCCATATCACAACTGGATGCACGCGTTCTCAGTCTCTCATTTCTGCTACCTCCTCTGCAAGAACCTGGAGCTATCCAACTACCTAGAGGACATCGAGATGTTTGCTCTTTTTGTGTCCTGCATGTGTCATGACTTGGACCACAGAGGGACCAACAACTCCTTCCAGGTGGCATCGAAATCTGTGTTGGCTGGCCTGTATAGTTCTGAGGGATCTGTGCTGGAGAGACACCACTTTGCTCAGGCGATCGCCATCCTCAACACCCAGGGCTGCAATATCTTTGAGAAGTTCTCCAGAAAGGACTACCAGAGGATGCTTGACCTGATGAGGGACATCATCCTGGCCACAGACTTGGCTCATCACCTACGGATCCTGAAGGATCTACAGAAAATGGCAGATGTGGGCTACAACACCAAAGAACCTCAGCACCATAACCTGCTACTGTGCCTGATCATGACCTCATGTGACCTCTCTGACCAGACCAAAGACTGGAAGACCACCTGGAAGATCGCAGGACTCATTTACAAGGAATTCTTTTCTCAAGGAGATCTGGAGAAGGCTATGGGGAACCGTCCCAGTGAGATGATGGACAGAGAGAAGGCCTACATCCCAGAGCTACAGACAGGCTTCATGGAGCACATAGCCATGCCCATCTACAAACTCCTCCAGGACCTGTTCCCCAGGTCGGTAGAGCTGTATGACACCGTGGCCAGCAATAGAGAACAGTGGGGCAGGGTCTCTCACAAGCCGGGAAACCATTCTCTGGATTATCTAGATGCAGAGTTTGAGCAGCTACAGGACGAGCAGAATGGATAGGACGGAAAGACAGAGCAGGGAAGGGACGATGAGACCAATGGTAGCCCTCCGGCCCAGCCCTAGGACACAGCAAGACAAACTAACAACTACATCATCAGTAATGTATTTCCTCCCCCTGAAAATACACCTATTTTACAGgttgttgtgtggtgttgttgcTGATACAGAAATGTAAATGATCATTAGAGTGTGTCACATTGCAGCAGGTATAGAgcaacacaatgcagatagcagGGGGAGGCAGAAAAGGATTGATTGCACATCATTGTAGAAGACAATACTGATGGCTTTGATCTCATTTTTCAAATGATTTTTTCCCCCTTTGCCTGGAGTTTCTATCAATGATATTTGAACTTTGTGTGAATCTTTACAGGCAGGTATAGAGTGTTACCAGGTCAAAACATGTACATTATAAGCAGAATGTTAGAAGCTTGCCTTACTTTGTCTAAGTTGCCTTCAATGTGAGAAACTGCTGGATTGATAATATATACTTTGTGGTATTGTGTATATAACAATGTTAGTGATTGGACTACATAACACTGTACAACTGTATATTTGTTGATATAAATGTACTAGTTGATAGCGCACAGATTTTTCTTAACATGTAAATGGTTGAATTGGCGTTACCACCACTTTGGGGATTCCCTGTATTGCCTGTAGAACCCCAAACGTTGTTTTCAGGGTTTGGTCTAAATCTGGGACTGATCATCTTACCCTTTGGACATTGCTTTTTGAATGTGTGACAGGTACAAATGGCATAGGGTCTATATGCTTTTTGTTTTTGGAACAGCTATATTCAGTTATTATGttgatgtactgtacagtatgtatgtttgCATTTTCCTATTTCCAAATAATAGAGATAATTCTGTGAATTCTGAATCTACATGTTAACATCATGCACTGGATATTtacatttgttcttaattgataGTTGTGGACAAGTAAAATATTGTTCACACAA
>TU1005078
tagAACGAGAGAGAAGCCTGGAGCATGCACAGAAATGTGTAGGCTTGTTTATGTACTGAGACTGTCTCCACTTACTCTGACAACCAGGAGAGTAATAGATGAAGAGAGCCAAAGAGACTGATAGAAAGATATTATTAGTGGCTGAAGGACAGAGACAAATAGAAAACgaaacacagagataaagaaaaagagacagagagataagaggaagCAATAGAAACACAGGCATTATGCTGCGGTGGGTTCTTATTGCCCTGTTTCGCTTCTTCAGGGGAGCAGGACGGCAGGTGTTCCCGccaatggaggagagaggggcgtACTCAAACTCCGTACAGTTTTACTATCATCCTTACTAAAGAACCCAAATGGTATTCCTGCCTCCTGGATCTTCATTATTATTAGAGTTGTTAGCTATCTGTCGATTTGTGGAGGAGACACACACATTactttccagtaatataccctccatTTGCAACCCTACTCTGGTTTCTAGGATTAAGGATGATCACTGTGTATGATGAAGTTGTTTCTCCAGACTTGTTTGTAATTTAGACTAAGGCAAGTGAAGGTTTCCTGTGTGGCAAGTATGTTTGTACCACCAAggttgcaccttaattggggaggacaggctcatagtaatggctcgaacgga
>TU1005243
AGTTTCTATCAATGATATTTGAACTTTGTGTGAATCTTTACAGGCAGGTATAGAGTGTTACCAGGTCAAAACATGTACATTATAAGCAGAATGTTAGAAGCTTGCCTTACTTTGTCTAAGTTGCCTTCAATGTGAGAAACTGCTGGATTGATAATATATACTTTGTGGTATTGTGTATATAACAATGTTAGTGATTGGACTACATAACACTGTACAACTGTATATTTGTTGATATAAATGTACTAGTTGATAGCGCACAGATTTTTCTTAACATGTAAATGGTTGAATTGGCGTTACCACCACTTTGGGGATTCCCTGTATTGCCTGTAGAACCCCAAACGTTGTTTTCAGGGTTTGGTCTAAATCTGGGACTGATCATCTTACCCTTTGGACATTGCTTTTTGAATGTGTGACAGGTACAAATGGCATAGGGT

Function

symbol description
pde2a Enables several functions, including 3',5'-cyclic-nucleotide phosphodiesterase activity; cyclic nucleotide binding activity; and metal ion binding activity. Involved in several processes, including cellular response to organic cyclic compound; cyclic-nucleotide-mediated signaling; and regulation of vascular permeability. Located in several cellular components, including cytosol; mitochondrial membrane; and perinuclear region of cytoplasm. Colocalizes with plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990171.1 False 3941 mRNA 0.47 29 36141669 36183062
TU1005078 False 652 lncRNA 0.43 2 36141671 36159072
TU1005243 True 434 lncRNA 0.36 1 36182429 36182862

Neighbor

gene id symbol gene type direction distance location
LOC110533766 LOC106603376 coding upstream 2990 36126080 ~ 36138679 (+)
LOC110533760 LOC106603380 coding upstream 152007 35887135 ~ 35989671 (+)
LOC110534918 cchcr1 coding upstream 269459 35865115 ~ 35872210 (+)
LOC110533751 LOC106603389 coding upstream 437596 35697166 ~ 35704073 (+)
LOC110533748 prps1 coding upstream 455354 35674201 ~ 35686573 (+)
LOC110533767 mtmr2 coding downstream 173 36183235 ~ 36194217 (+)
fam76b LOC106603374 coding downstream 11512 36194574 ~ 36202847 (+)
LOC110533770 LOC106603373 coding downstream 36305 36219367 ~ 36246315 (+)
LOC110533771 LOC106603372 coding downstream 65812 36248874 ~ 36256624 (+)
LOC110533775 LOC106603239 coding downstream 118792 36301854 ~ 36303664 (+)
G883242 NA non-coding upstream 54969 36083771 ~ 36086700 (+)
G883202 NA non-coding upstream 148337 35990569 ~ 35993332 (+)
G883158 NA non-coding upstream 238535 35902820 ~ 35903134 (+)
G883444 NA non-coding downstream 21237 36204299 ~ 36204683 (+)
G883507 NA non-coding downstream 107380 36290442 ~ 36290667 (+)
G883508 NA non-coding downstream 108028 36291090 ~ 36291311 (+)
G883473 om-i non-coding downstream 109240 36292302 ~ 36295572 (+)
G883513 LOC106603370 non-coding downstream 134042 36317104 ~ 36326443 (+)
G882624 NA other upstream 725431 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 819868 35307753 ~ 35321801 (+)
G882300 NA other upstream 906444 35225097 ~ 35264333 (+)
G882265 NA other upstream 978163 35161348 ~ 35163506 (+)
LOC110533788 NA other downstream 616323 36799376 ~ 36801589 (+)
G883966 NA other downstream 666584 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2572447 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5529265 41712327 ~ 41717292 (+)

Expression


Co-expression Network