LOC110533770 (LOC106603373)


Basic Information

Item Value
gene id LOC110533770
gene name LOC106603373
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36219367 ~ 36246315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990176.1
cccatctaccacaaaACGGCgttctaccacacaacgacgtttcCACAACGTATCCAGTTTACCAGCAGAgccattcttcaaaggacagaggactcggtttggcaacacggccttccatctaccatcaacctactgaagcgcagctcagaGAGAAAGGAGTCAGGGTGCCGCGACCCTTCTCCAGTGGACCCAGCGCCTTCATTCCAAAAGAGGAGATTGTGGAGGCGTCCCAGGTGGACCCCCAAACAGAGCAGATCCTGGCCGAGGCCTACTCTCTGTCAGGCCACGTGGACCATCTGACCCAGGTGATGGGACTGCACCCCCACTACCTGGAGTCCTTCCTGCGTAGCCAGTTCTACCTGCTGAGGATGGACGGCCCCCTGCCTCTCCACTGCCGACACTACATTGCCATCATGgcTGCAGCGCGTCACCAGTGTTCCTTCCTGGTGTCTCTGCATGTGCGTGAGTTCTACAGGATGGGGATGTGTCTAGACTGGCTGAAGGGTCTACAGTACGCCCCTCAGAGACTGAGGAACCTCAACGAGATCAACAAGATCCTAGCACACAGGCCCTGGCTCATCACCAAAGAGCACATTCAGAACTTGGTGAAAACAGGGGAGCACAGTTGGTCTTTGGCAGAGCTGGTCCATGCTGTGGTCATATTGGCCCATTTCCATTCCCTGGCCAGCTTTGTGTTTGGCAGTGGTATCAACCCCCAGGTGGATCCACAGAATGCCAATGGCTTCCAGTCCGTTTTCATCAGTGACAACTGTACATGTGACTTGGCCAGCGACCATCACCTGGACCGAGACCTCAGCAACACCAGCCCCGTGACCACAGACTCGGTCAGTGAGTTAGAGGCACTGATGGACAGAATGAAGAGgctgcaggaggagagagaggaggatgaggccTCGCAGGAGGAGATGGCCACACGCTtcgagaaagagaagaaagagagccTCCTGGTGGGCTCTGGGGATATGAAGAATGAGGTGATGCCCACATCCAAAGTGTCTCGGTTTGTAGAGGATGCCACCTTTGGGTACCAGCACTTTGCTCGACACGGAGAGGACAACCCACCAACATTTAGAGCACAGgactACTCGTGGGAGGACCATGGTTTCTCTCTGGTCAACAGGCTGTACTCAGACATTGGTCTGCTGCTGGATGACAAGTTCCGAACAGCGTGTGACCTAACCTACTACAACATGGCCAGTCATGAGGACGTGGACACCACCATGCTCCGACGTGCACTCTTCAACTACGTGCACTGCATGTATGGCATCAGGTATGATGACTATGACTATGGGGAGGTGAATCAGCTATTGGAACGCAGTCTGAAGGTCTATATAAAGACGGTAACATGTTATCCAGAGAGGACCACTCGCCGCATGTACGACAGCTACTGGTGCCAGTTCCGCCACTCCGAGAAGGTCCATGTGAACCTACTCCTAATGGAGGCCAGGATGCAGGCAGAACTGCTATACACCCTGCGCGCCATCACACGCTACATGACCTGACCCTGACCGACCACAGCGGGTTGTCTTTCTCCAACTGACCAATAGAAAACCCCAGCCCTCTACAGTCCTCATCACCCCACCTCCCCCAACACCACCACCGGCCTTCCCCTTTCCACAGCCCCAGGAACGAGGCCTCTTGAAACCAGAAGACTGTCTCTCTACCAGGCACATGACTCTAAAACTGGCCTCCTACTGTGTGGTTGGGTGGGGACTTTAAGGTCTTTTTAACGTAATGCCCTTGTAAAGAGGAAGTTTGTGAAGATGAAGGAAATCCTATTGTGAGTGTATGCAAGTGAAAACGGGTGCACATGACTGACTATTATTATCCTCCTTTGCCAAAATCATAATGGCAGTTTGGCTTCAGTGACATGCAGTGGAGTGGTTGGAGTTCATGACTCACTTTTGGAAATTGTTTATCCAAGCAACCTCACAAAGTACTGAACTCCAGCTCTAAGGAGGATACTGTATAGCCAGAAACAGTGTTACACAATAATATACCTCTGAATGTAATGCCTTGATTTGAGACAGACCCACCAATATCAGAAACAATATTAGAAGGTTATCTGATTGACAGAACAAGCCCTTTTGTGGCACTCAGATATTTTAAAAAGTGCAATATGGTCTTTATTCTTCTTACctttttttattatatatttctTGCAACTTAAAAGGCTGTGACAGAATACTTATGCTTTTCAGTCTATTTAGACCTTTGTCGATAAATTAGGCTAATTAAAATATTTACTGAGAATTATTTCTCTGCAATATATGTCCTAATAGAGACTGTATCACAGCAGGGAGTGCACAAGCAACATTATCAgaaattgtatgatttttttattGCTTTCCCTCTCTCATGCTTTTTGTGACATATTTCTGTGCCAAATGTTTCTAACAGGGTCTGTAAGACATTCATCTTGCCTACTTGTCTATATTTCTACCAAATATGCAGTGTACAGTACAGACGTTAGATCCATGAGACATTTAAAATACAAAATGTGTATTCCATTAGGTATTACAGTACATTTCAGAACTGAGATAAGCTACAGTAGTGCTGGGAATGTGCTCTTTGTTTTTGCTTTGAAGTATCACCACGTGCAAATGCCTAACCCTGAAATCTGCACTGTTAACTTTGAGTCTCACCAGCATTTATTTGATGCTTATTTCTTCATCAGTGTAGGGTTGGAAAAGTCATGGTGCTTTTGTGAATGCTTGTTGCTCTTTGCACATTTGTGTCTGCACGTTGGAACGTTGGTAATTCCCAGTTGGAAATATGCAAGAAATTTTTATTTCCttaaatcctctctctcttctctctaatcTTTCTCAAAAATTAAGACTTTGCATTGTATGTCTCAGATGCGAAATGTGTTAAATATTAGCACCACTCCCCCCATTTGTGTGAAGGTTTAGATAGTTTAGATGTATTGATCAAATTCTTTAAACATATCTCTGTGAACTCAGATGCCATTCACCAAAGTACTATTTACTGTTTGCCAACCTACTTTATATTTTTAAGGTGTTTTAATTGGGGGGGATAAACAGCTTGTATTAACAAGAACAATTAGGTAATGTATCATTCGAATTATAACCGATGAAGATGGAAGCTGAGTTGTCTAAACTTTACAAAATGATAATCTACTGGTCTGAGAGTTAAAGCTGCACTTTTGTTTCTCTTACCGAGATTGTGCTTCAAGATTGTTGGGAGGTCGTTTCTTCTTTATCAAAGCCACATTGTTATTTTTTCAATTAAAACAACTGTAAAATGAAAACTGTACAACTGAAACGATATTTCACACAGTGCCTGTAaggaaataaaaaaacaataaagaagTTAAGAAATA
>XM_036990175.1
CAAAATTAGAAGTTCGCTCAAAAACTGCCTGGCGTTGTGTGTGGTGAGAAAGACTGGGGAGTACGGAGCCTATAATACTCTCGAGAAAGGCTTCGTAATTTAACAGCTCTTCGGTCTCCCCATCTCCAACCCACCACCGCCGCTGCCGACCCACCTACAATCGAAGGATATACTGTAATTTAACTGTACAGAAAAAGTAACGTTACagtaaaaacatttcaaaatacgGTGTCTAGAACTGTTAAAGTGGAAGCCAGTATGAACGTCAGCGCGGAGTCTTTCACCTCCAACCCATTTCACATCTGTAACATCTGTCAGAAGGTGATTAGGAAAAAGGAGAAAGGAGTCAGGGTGCCGCGACCCTTCTCCAGTGGACCCAGCGCCTTCATTCCAAAAGAGGAGATTGTGGAGGCGTCCCAGGTGGACCCCCAAACAGAGCAGATCCTGGCCGAGGCCTACTCTCTGTCAGGCCACGTGGACCATCTGACCCAGGTGATGGGACTGCACCCCCACTACCTGGAGTCCTTCCTGCGTAGCCAGTTCTACCTGCTGAGGATGGACGGCCCCCTGCCTCTCCACTGCCGACACTACATTGCCATCATGgcTGCAGCGCGTCACCAGTGTTCCTTCCTGGTGTCTCTGCATGTGCGTGAGTTCTACAGGATGGGGATGTGTCTAGACTGGCTGAAGGGTCTACAGTACGCCCCTCAGAGACTGAGGAACCTCAACGAGATCAACAAGATCCTAGCACACAGGCCCTGGCTCATCACCAAAGAGCACATTCAGAACTTGGTGAAAACAGGGGAGCACAGTTGGTCTTTGGCAGAGCTGGTCCATGCTGTGGTCATATTGGCCCATTTCCATTCCCTGGCCAGCTTTGTGTTTGGCAGTGGTATCAACCCCCAGGTGGATCCACAGAATGCCAATGGCTTCCAGTCCGTTTTCATCAGTGACAACTGTACATGTGACTTGGCCAGCGACCATCACCTGGACCGAGACCTCAGCAACACCAGCCCCGTGACCACAGACTCGGTCAGTGAGTTAGAGGCACTGATGGACAGAATGAAGAGgctgcaggaggagagagaggaggatgaggccTCGCAGGAGGAGATGGCCACACGCTtcgagaaagagaagaaagagagccTCCTGGTGGGCTCTGGGGATATGAAGAATGAGGTGATGCCCACATCCAAAGTGTCTCGGTTTGTAGAGGATGCCACCTTTGGGTACCAGCACTTTGCTCGACACGGAGAGGACAACCCACCAACATTTAGAGCACAGgactACTCGTGGGAGGACCATGGTTTCTCTCTGGTCAACAGGCTGTACTCAGACATTGGTCTGCTGCTGGATGACAAGTTCCGAACAGCGTGTGACCTAACCTACTACAACATGGCCAGTCATGAGGACGTGGACACCACCATGCTCCGACGTGCACTCTTCAACTACGTGCACTGCATGTATGGCATCAGGTATGATGACTATGACTATGGGGAGGTGAATCAGCTATTGGAACGCAGTCTGAAGGTCTATATAAAGACGGTAACATGTTATCCAGAGAGGACCACTCGCCGCATGTACGACAGCTACTGGTGCCAGTTCCGCCACTCCGAGAAGGTCCATGTGAACCTACTCCTAATGGAGGCCAGGATGCAGGCAGAACTGCTATACACCCTGCGCGCCATCACACGCTACATGACCTGACCCTGACCGACCACAGCGGGTTGTCTTTCTCCAACTGACCAATAGAAAACCCCAGCCCTCTACAGTCCTCATCACCCCACCTCCCCCAACACCACCACCGGCCTTCCCCTTTCCACAGCCCCAGGAACGAGGCCTCTTGAAACCAGAAGACTGTCTCTCTACCAGGCACATGACTCTAAAACTGGCCTCCTACTGTGTGGTTGGGTGGGGACTTTAAGGTCTTTTTAACGTAATGCCCTTGTAAAGAGGAAGTTTGTGAAGATGAAGGAAATCCTATTGTGAGTGTATGCAAGTGAAAACGGGTGCACATGACTGACTATTATTATCCTCCTTTGCCAAAATCATAATGGCAGTTTGGCTTCAGTGACATGCAGTGGAGTGGTTGGAGTTCATGACTCACTTTTGGAAATTGTTTATCCAAGCAACCTCACAAAGTACTGAACTCCAGCTCTAAGGAGGATACTGTATAGCCAGAAACAGTGTTACACAATAATATACCTCTGAATGTAATGCCTTGATTTGAGACAGACCCACCAATATCAGAAACAATATTAGAAGGTTATCTGATTGACAGAACAAGCCCTTTTGTGGCACTCAGATATTTTAAAAAGTGCAATATGGTCTTTATTCTTCTTACctttttttattatatatttctTGCAACTTAAAAGGCTGTGACAGAATACTTATGCTTTTCAGTCTATTTAGACCTTTGTCGATAAATTAGGCTAATTAAAATATTTACTGAGAATTATTTCTCTGCAATATATGTCCTAATAGAGACTGTATCACAGCAGGGAGTGCACAAGCAACATTATCAgaaattgtatgatttttttattGCTTTCCCTCTCTCATGCTTTTTGTGACATATTTCTGTGCCAAATGTTTCTAACAGGGTCTGTAAGACATTCATCTTGCCTACTTGTCTATATTTCTACCAAATATGCAGTGTACAGTACAGACGTTAGATCCATGAGACATTTAAAATACAAAATGTGTATTCCATTAGGTATTACAGTACATTTCAGAACTGAGATAAGCTACAGTAGTGCTGGGAATGTGCTCTTTGTTTTTGCTTTGAAGTATCACCACGTGCAAATGCCTAACCCTGAAATCTGCACTGTTAACTTTGAGTCTCACCAGCATTTATTTGATGCTTATTTCTTCATCAGTGTAGGGTTGGAAAAGTCATGGTGCTTTTGTGAATGCTTGTTGCTCTTTGCACATTTGTGTCTGCACGTTGGAACGTTGGTAATTCCCAGTTGGAAATATGCAAGAAATTTTTATTTCCttaaatcctctctctcttctctctaatcTTTCTCAAAAATTAAGACTTTGCATTGTATGTCTCAGATGCGAAATGTGTTAAATATTAGCACCACTCCCCCCATTTGTGTGAAGGTTTAGATAGTTTAGATGTATTGATCAAATTCTTTAAACATATCTCTGTGAACTCAGATGCCATTCACCAAAGTACTATTTACTGTTTGCCAACCTACTTTATATTTTTAAGGTGTTTTAATTGGGGGGGATAAACAGCTTGTATTAACAAGAACAATTAGGTAATGTATCATTCGAATTATAACCGATGAAGATGGAAGCTGAGTTGTCTAAACTTTACAAAATGATAATCTACTGGTCTGAGAGTTAAAGCTGCACTTTTGTTTCTCTTACCGAGATTGTGCTTCAAGATTGTTGGGAGGTCGTTTCTTCTTTATCAAAGCCACATTGTTATTTTTTCAATTAAAACAACTGTAAAATGAAAACTGTACAACTGAAACGATATTTCACACAGTGCCTGTAaggaaataaaaaaacaataaagaagTTAAGAAATA

Function

NR:

description
sestrin-3-like

GO: NA

KEGG:

id description
K10141 SESN1_3; sestrin 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990176.1 False 3367 mRNA 0.45 10 36219367 36246315
XM_036990175.1 True 3554 mRNA 0.45 10 36229240 36246315

Neighbor

gene id symbol gene type direction distance location
fam76b LOC106603374 coding upstream 16520 36194574 ~ 36202847 (+)
LOC110533767 mtmr2 coding upstream 25150 36183235 ~ 36194217 (+)
LOC110533099 pde2a coding upstream 36305 36141669 ~ 36183062 (+)
LOC110533766 LOC106603376 coding upstream 80688 36126080 ~ 36138679 (+)
LOC110533760 LOC106603380 coding upstream 229705 35887135 ~ 35989671 (+)
LOC110533771 LOC106603372 coding downstream 2559 36248874 ~ 36256624 (+)
LOC110533775 LOC106603239 coding downstream 55539 36301854 ~ 36303664 (+)
LOC110533776 LOC106603369 coding downstream 103755 36350070 ~ 36377139 (+)
tmprss4b LOC106603365 coding downstream 399405 36645720 ~ 36650306 (+)
LOC110533779 LOC106603362 coding downstream 437551 36683866 ~ 36698702 (+)
G883444 NA non-coding upstream 14684 36204299 ~ 36204683 (+)
G883429 NA non-coding upstream 38391 36180743 ~ 36180976 (+)
G883426 NA non-coding upstream 41285 36177822 ~ 36178082 (+)
G883421 NA non-coding upstream 41963 36177165 ~ 36177404 (+)
G883507 NA non-coding downstream 44127 36290442 ~ 36290667 (+)
G883508 NA non-coding downstream 44775 36291090 ~ 36291311 (+)
G883473 om-i non-coding downstream 45987 36292302 ~ 36295572 (+)
G883513 LOC106603370 non-coding downstream 70789 36317104 ~ 36326443 (+)
G883523 NA non-coding downstream 87150 36333465 ~ 36333686 (+)
LOC110533748 prps1 other upstream 532794 35674201 ~ 35686573 (+)
G882624 NA other upstream 803129 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 897566 35307753 ~ 35321801 (+)
G882300 NA other upstream 984142 35225097 ~ 35264333 (+)
G882265 NA other upstream 1055861 35161348 ~ 35163506 (+)
LOC110533788 NA other downstream 553070 36799376 ~ 36801589 (+)
G883966 NA other downstream 603331 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2509194 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5466012 41712327 ~ 41717292 (+)

Expression


Co-expression Network