LOC110533771 (LOC106603372)


Basic Information

Item Value
gene id LOC110533771
gene name LOC106603372
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36248874 ~ 36256624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618283.2
ACAACGCGTTTCAAAATTGCTGTTTGACCTTTCCTAGTTCCGTAGGCTTTGTTCATACGCTGTGATAACAGCGTCTACAATCCAAAGCAAAGGGCCCTTTCTCTCCTGATAGTGTGAGGAAAAAGAGCCACCAAAAATGACAACAGCCGCGAGACCGACGTTTGAGccagcgagaggggggagagggaagggagagggcgaTCTCAGTGCGTTGTCCAAACAGTACTCAAGCCGAGATCTGCCTGGTCACACTAAGATCAAGTACAGGCAGCTTACCCAGGATGCCCCCGAGGAGGTGCGTGCCCGGGACTTCCGcagggagctggaggagagggagcGTGTTGCTGTCCGGgagaagactagagagaggggACCGAGAGAACACACCacatcctcatcttcatcctctaaGAGGCCCAGACTAGATCAAATCCCTGCTGCCAACCTGGATGCAGATGACCCTCTCACTGACgatgaggaggaggatgatgtctCTGAGGAGGACAGTGATGACGATGACACTGCGGCTCTGCTGGCTGAATTGGAGAAAATCAAGAAGGAGCGGGCTGAGGAGCAGGAATGCAAGGAGCGGGAGCAgaaagcagaggaggagaggatccgCATGGAGAACATCCTTAGTGGGAATCCTCTGCTCAACCTGGctggacagcagcagcagcagcaacaacagatagtccccacCCCGAGTGCCTTCAGCGTCAAGAGAAGgTGGGACGATGACGTCGTGTTCAAGAACTGTGCAAAGGGAGTGGATGAGGCACGCCGGGAGAAACGCTTTGTCAATGACACTCTGCGCTCGGAGTTCCACAAGAAATTCATGGAGAAATATGTGAAGTAGCACTTGCAGCTCTGCTATGAAGGTGTTCCATTTCTTTCTGCTCTGTTCCCAGTTCTAAGAGGACAAGGAGGACGTGATAGAGATTGGTCTGAAAACATTGAATGAGCCTGAAGAATGGTGTCATCCGTTGACATGGAACACGCACAAAATCCTCTGTATATAAAGTAATCTAATGCCTGACCTGAAAACAAATTTCAACTAGTTTTGTTTCGTGTACAATCATTTTCCACCCCTGAAAGGAATGGTTGCAATAGTGACATCATCAATGTCAACTTGTTGTTATTTAACTTTTACCTTTTTTTTAAGCGCCAATGTCAATAAACCAACAAAAAAGAAAACCCTGTGTCTGTGAGAGGGCCTTGATGCTTTCCTCAGTGATTTTAGCTTTGTGCCGGGAGAATTCTGCAATGACTTCCATTAAAAGCTCGGCAGCAAGACTTTTTTTTCTATcctttcaaaaaaataaaaggtctTTGTGGTACATGAACGCCTCTGTGGCACATTACCTTCATGACTGACGCCTTTAATtgaggagatgaagaggaggtTCAAACCTTTCTGTAGAGGATGTTTAAGTCTATCTGAAGTGAAGTTTATGTTCAATTTAGGCTAAGATTCAATCAGTTCTGGAGTTAACCCAGGATAACTGACAGCTGTTATTATTTAGGCAATGTCGAGGTGTAACTGCGGTAAAGCTATCAAATATGTGAGCGGCTGCTCTTGTCATTGTCGCGAAACCACATCCGTCCTTAAATCCCTCTcgcgttagaagttcagaacgagaaagtgtaggctatatggAAATGACACTCAAATTGAAAGTCGTGAAACATAAGGATTGATGTCAGCCTAATTGAGGTGTAGATTACAACACATTCCAGTGTTTGAACTTGTAACAGGCTGCGTGGGATTTATCCTAATGTGACTTGTGCATCCAATGTCAATGATGGGTATAATGGGAGCCACTTGCTGATTTCACAGCTCCAACACAGTTACACCCCCAACATCGCCTAAATAATAAACAATGAAACTGCCATGCAGTTGTCAGTTATCACCGGTTAAGGAGGATCTGATTGAATCAAGCCCACGCCTGTGAGCCCAGAATCTGGACTctggggtagacgtaacataataAATGTAAATCTGTCTCCATACATTTATTATATGTTACatgttatttattattatttgtatgtaTTAATTAAGTAAAATTCTTAAGtggtctgtgatgagattcgaacacgcaacctttgggttgctagatgttcgtTTTTCTACGCCCCCACCCTGACCAACCTCCTTTACTTTTTGCCTCAAGTAACCTGTCTTATGTAACTATGTAACCAAAtgtttaaacaaatatataatctctgtgcccttgagcaaggcacttaaccgtaATTGCTCTGCATAACTAAAATGTAACGTgacatactaatttgagtgtcctggatttatatttgctatgttacgtctagtctgagaccaggctCATATTGTGCACCACACAGTTCAACATTGTAGAGAAACATGAAAAGATTCATAGAGAACTGTTGTCTGCTATGATGAGCTAAGCTGTTCCCGCTGAATAATGGTCTTTTTAGAGCAAAGGTATGGTTTCTCACATGTGAATTTAAGCTTGCCAGAAATAATTTTGTCTCATGGTGAAAACGGAAAACCtctgtatatttgtgtgtatatatatactgaacaaaaatataaacgcaacatggaaa
>XM_036990177.1
AGCAAACTATTCCATATTAGCTAGTTGTTTTTGAAAGAGAAAGATAGCTAGTTATGATATTATTTTAGTAAACCTGTAGCTTGCATTACCTTATGACAGTTATTCTTCCAGCATACTAACGTCAACTGGCAGCATAGCCACCAAAAATGACAACAGCCGCGAGACCGACGTTTGAGccagcgagaggggggagagggaagggagagggcgaTCTCAGTGCGTTGTCCAAACAGTACTCAAGCCGAGATCTGCCTGGTCACACTAAGATCAAGTACAGGCAGCTTACCCAGGATGCCCCCGAGGAGGTGCGTGCCCGGGACTTCCGcagggagctggaggagagggagcGTGTTGCTGTCCGGgagaagactagagagaggggACCGAGAGAACACACCacatcctcatcttcatcctctaaGAGGCCCAGACTAGATCAAATCCCTGCTGCCAACCTGGATGCAGATGACCCTCTCACTGACgatgaggaggaggatgatgtctCTGAGGAGGACAGTGATGACGATGACACTGCGGCTCTGCTGGCTGAATTGGAGAAAATCAAGAAGGAGCGGGCTGAGGAGCAGGAATGCAAGGAGCGGGAGCAgaaagcagaggaggagaggatccgCATGGAGAACATCCTTAGTGGGAATCCTCTGCTCAACCTGGctggacagcagcagcagcagcaacaacagatagtccccacCCCGAGTGCCTTCAGCGTCAAGAGAAGgTGGGACGATGACGTCGTGTTCAAGAACTGTGCAAAGGGAGTGGATGAGGCACGCCGGGAGAAACGCTTTGTCAATGACACTCTGCGCTCGGAGTTCCACAAGAAATTCATGGAGAAATATGTGAAGTAGCACTTGCAGCTCTGCTATGAAGGTGTTCCATTTCTTTCTGCTCTGTTCCCAGTTCTAAGAGGACAAGGAGGACGTGATAGAGATTGGTCTGAAAACATTGAATGAGCCTGAAGAATGGTGTCATCCGTTGACATGGAACACGCACAAAATCCTCTGTATATAAAGTAATCTAATGCCTGACCTGAAAACAAATTTCAACTAGTTTTGTTTCGTGTACAATCATTTTCCACCCCTGAAAGGAATGGTTGCAATAGTGACATCATCAATGTCAACTTGTTGTTATTTAACTTTTACCTTTTTTTTAAGCGCCAATGTCAATAAACCAACAAAAAAGAAAACCCTGTGTCTGTGAGAGGGCCTTGATGCTTTCCTCAGTGATTTTAGCTTTGTGCCGGGAGAATTCTGCAATGACTTCCATTAAAAGCTCGGCAGCAAGACTTTTTTTTCTATcctttcaaaaaaataaaaggtctTTGTGGTACATGAACGCCTCTGTGGCACATTACCTTCATGACTGACGCCTTTAATtgaggagatgaagaggaggtTCAAACCTTTCTGTAGAGGATGTTTAAGTCTATCTGAAGTGAAGTTTATGTTCAATTTAGGCTAAGATTCAATCAGTTCTGGAGTTAACCCAGGATAACTGACAGCTGTTATTATTTAGGCAATGTCGAGGTGTAACTGCGGTAAAGCTATCAAATATGTGAGCGGCTGCTCTTGTCATTGTCGCGAAACCACATCCGTCCTTAAATCCCTCTcgcgttagaagttcagaacgagaaagtgtaggctatatggAAATGACACTCAAATTGAAAGTCGTGAAACATAAGGATTGATGTCAGCCTAATTGAGGTGTAGATTACAACACATTCCAGTGTTTGAACTTGTAACAGGCTGCGTGGGATTTATCCTAATGTGACTTGTGCATCCAATGTCAATGATGGGTATAATGGGAGCCACTTGCTGATTTCACAGCTCCAACACAGTTACACCCCCAACATCGCCTAAATAATAAACAATGAAACTGCCATGCAGTTGTCAGTTATCACCGGTTAAGGAGGATCTGATTGAATCAAGCCCACGCCTGTGAGCCCAGAATCTGGACTctggggtagacgtaacataataAATGTAAATCTGTCTCCATACATTTATTATATGTTACatgttatttattattatttgtatgtaTTAATTAAGTAAAATTCTTAAGtggtctgtgatgagattcgaacacgcaacctttgggttgctagatgttcgtTTTTCTACGCCCCCACCCTGACCAACCTCCTTTACTTTTTGCCTCAAGTAACCTGTCTTATGTAACTATGTAACCAAAtgtttaaacaaatatataatctctgtgcccttgagcaaggcacttaaccgtaATTGCTCTGCATAACTAAAATGTAACGTgacatactaatttgagtgtcctggatttatatttgctatgttacgtctagtctgagaccaggctCATATTGTGCACCACACAGTTCAACATTGTAGAGAAACATGAAAAGATTCATAGAGAACTGTTGTCTGCTATGATGAGCTAAGCTGTTCCCGCTGAATAATGGTCTTTTTAGAGCAAAGGTATGGTTTCTCACATGTGAATTTAAGCTTGCCAGAAATAATTTTGTCTCATGGTGAAAACGGAAAACCtctgtatatttgtgtgtatatatatactgaacaaaaatataaacgcaacatggaaa

Function

NR:

description
protein CWC15 homolog

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12863 CWC15; protein CWC15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618283.2 False 2595 mRNA 0.44 7 36248874 36256624
XM_036990177.1 True 2605 mRNA 0.43 7 36249009 36256624

Neighbor

gene id symbol gene type direction distance location
LOC110533770 LOC106603373 coding upstream 2559 36219367 ~ 36246315 (+)
fam76b LOC106603374 coding upstream 46027 36194574 ~ 36202847 (+)
LOC110533767 mtmr2 coding upstream 54657 36183235 ~ 36194217 (+)
LOC110533099 pde2a coding upstream 65812 36141669 ~ 36183062 (+)
LOC110533766 LOC106603376 coding upstream 110195 36126080 ~ 36138679 (+)
LOC110533775 LOC106603239 coding downstream 45230 36301854 ~ 36303664 (+)
LOC110533776 LOC106603369 coding downstream 93446 36350070 ~ 36377139 (+)
tmprss4b LOC106603365 coding downstream 389096 36645720 ~ 36650306 (+)
LOC110533779 LOC106603362 coding downstream 427242 36683866 ~ 36698702 (+)
LOC110533102 NA coding downstream 446094 36702718 ~ 36704449 (+)
G883444 NA non-coding upstream 44191 36204299 ~ 36204683 (+)
G883429 NA non-coding upstream 67898 36180743 ~ 36180976 (+)
G883426 NA non-coding upstream 70792 36177822 ~ 36178082 (+)
G883421 NA non-coding upstream 71470 36177165 ~ 36177404 (+)
G883425 NA non-coding upstream 73977 36174485 ~ 36174897 (+)
G883507 NA non-coding downstream 33818 36290442 ~ 36290667 (+)
G883508 NA non-coding downstream 34466 36291090 ~ 36291311 (+)
G883473 om-i non-coding downstream 35678 36292302 ~ 36295572 (+)
G883513 LOC106603370 non-coding downstream 60480 36317104 ~ 36326443 (+)
G883523 NA non-coding downstream 76841 36333465 ~ 36333686 (+)
LOC110533748 prps1 other upstream 562301 35674201 ~ 35686573 (+)
G882624 NA other upstream 832636 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 927073 35307753 ~ 35321801 (+)
G882300 NA other upstream 1013649 35225097 ~ 35264333 (+)
G882265 NA other upstream 1085368 35161348 ~ 35163506 (+)
LOC110533788 NA other downstream 542761 36799376 ~ 36801589 (+)
G883966 NA other downstream 593022 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2498885 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5455703 41712327 ~ 41717292 (+)

Expression


Co-expression Network