LOC110533772 (panx1)


Basic Information

Item Value
gene id LOC110533772
gene name panx1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36277054 ~ 36289721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990178.1
aCGTCACAAATAATACGATTAGTATGCGTATTCGAACACAGTTAATGAGTCAGGCGTTATTCCATGCACTTTCGGCTAAGTAACATGTGTGTTAACTTAATTTGTCGAGATCAATATAGAAAATAATGTGACTAAAATCTTGGACAACGCGCGGCTTGTTTTTTAGATAATAGATCAATTGTATTAACTGGATAACTATTCATTTTTAATTTGTTATACCGACTATTTCACATTGAACAATGGCAATTGCACACGTTGCAACAGAATACGTTTTCTCCGACTTTTTATTGAAGGATCCAACAGAGTCGAAGTACAAAGGGGTGCGTCTGGAGCTTGCCGTAGACAAAATAGTCACTTTCATCGCGGTTGGTCTCCCTTTGTTACTCATCTCCCTCGCGTTTGCCCAAGAGGTGTCAGTAGGTACCCAGATCAGCTGTTTTGCCCCTACCAACTTCTCATGGCGACAGGCAGCCTATGTTGACTCCTTCTGTTGGGCGGCGGTGCAGGAGCAGCAACTCAGCGTTGATGGCGTCGAGGGTGCCCCCCTATGGCTGCACAAGTTCTTCCCTTACATCCTTCTGTTGGTGGCAATCCTCATGTACATCCCTGCTCTGTTCTGGCGCTTCACTGCCGCCCCACACCTCTCCTCTGACCTCAACTTCATCATGGAGGAGCTGGACCGCTCCTATAACCGAGCCATCAGACTGGCCAAGAGCCTGGCCTCATCTATAGACACCAAAGATGTCTCTGACGACCCCCCCAGTGCCCTGGACCTGACCGAAGGCTGCTTTAAATACCCTCTGGTGGAGCAGTATCTGAAGACCAAGCGTTTCTCCCGCTGGCTGGTGGTGAAGTACCTGGCGTGTCGGCTGTTAACCCTGCTCACCCTGCTGCTAGCCTGCCTCTACCTGGGCTACTACATTCGCCTAGCCTCCATCACCGATGAGTTTGCCTGTGACGTGCGGACAGGGGTGCTGAGGAACAACAGTGCGGTGCCGGTGCAGTGTAAGCTGGTGGCGGTGGGGGTGTTCAGGCTGCTAAGCTACATCAACCTGGGGGTGTACATCCTGCTGGCTCCCCTGCTGGTGTACGCTGCCCTGGGCCCGGCCAGACAGAGCTCCCGCTTCCTCCGGCCCTACGAGATGCTGCCGGCCTTCGGGGCTCTGGACCTGGACACACCCTTCTACAACGACCTCAGCGTGTACCTGCTCTTCCTGGAGGAGAACCTCAGTGAGCTGAAGTCTTATAAGTGTCTGCAGGTGCTGGAgctgctgagggaaggaggcGGTGAGGCCTTTGACACTATGTGTCTGCTGCAGACTCTGGGCCAGGTGAAGACAGATGTGGTGGATGGGAAAAGATCCACTTCACACAAGGACAGCAAAGACTGTACCAAGCCTGGAGAGGAGGACACAAGCTCTTCTGAGCTGAGAgATGTTTCTACATTGTGGCTGGACGACGGGCTGAAGAAAGACAACAAGGACAAGACCTGCTGTGGTGGGAAAGATGTACGTCAGAGAGTGATCTGAAGTGTGAACTAGGGCCTTTAtcttttgtcatttagcagacgttcttctccagagtgacttacagaagcaattagagttaagtgccttgcgcaAGGGCATGTCAACAGATATTTCACATAGTCGGCTTGGAGATTgtaaccagcgacctttcggttactggccctaaccactaggctacatgctgaTCAATagcttgtttattttttatttttttaagtgctGTGTTGCTATGTTACCGTACCTACCTTAGTACAATAAAATTGTACCTTTTATTCTTATCAGGATCGATCAAGCCGCTACTAATTTATTCTCTGGAATTTAAACAAAAGTTGTTTATAGAACTGTGGTCCACAGTTTCCCCATAGAGATGCTCTCTTTCTGTGTTTACTGTCAGAGATACAAGGTGTTTGTCAGACTGCGTCATTATTTAATAAAAAAACTGTGATTAGTTATCTAATATTGCTAGCGACATAAACAAAGCCTTGCCCTCATTTTAACCAGCATACTTCAGCCTCGGTACCTAAGTGGTAACGTATTTATATTGAACCTTTTATTTTATAAGGAATAGCAGATGATTTTATTCTTCGGGGATCTGAGTAACTCAATACGTCTCAGGGCTAGATTCAATCAGTTCTGCACTAACCCGCTTAACCGACAACTGCATAGCACTTTCATTGTTTTTAGGCGATGTCGTAGGTGTAACGGCATTGGAGTTGTCAAATCAGCAAGCGTCTCCCAGCATTCTACCTGTcgcggacattgccattggatgCAATGAGTTGTATTAATAATAATCCCATGCAGGCTTGTTACAAATCCGAACACCAGAATGTGTGTTGTAATCTACACCTTGATTAGGCTGATATACACTAagtgtactaaacattaggataacctgctctttccatgacaataATTTACCAGGTAAATCCTGGTGAAAgcttatgatcccttattgatgtcgcctgttaaatctacttcaatcagtgtagatgaaggggaggagactggttaaagaaggactttaaaGCCTTGAGACTTGGATTATGTATCTGTaccattgagggtgaatgggaaagacaaaagatttaagtttTTTAAGatttttgaatggggtatggtaggtgccaggcgcaccagtttgtgtgtcatgaactgcaacgctgctgggtttttaacgCTCAACAAGAAcagttcaccacccaaaggacatccagccaacatgaaacacctgtgggaagcattggaatcagcatgggccagcatccctgttggacactttcaacaccttgtgtgTTCAAGCCCCaatgaattcaggctgttctgagggcaaagggggtgcaactcaatattaggaaggtgttcctaatgttttgtacactgtgtaaatGCATATTTAGtttaatgattttcaatttgagtGTCATTaattctatatagcctacactttctcctTCTGAACTTCTAATGTAAGTGGGACTagtgtggcttcgtgacaataAATACACAAGCATCCGTTCTGATTTGACAGCTCTCATGCAGTTCCACATCCGACACCGCAAAAAGACTAGCTATGTCAGCTATCGCCGGTTAACACGTGATCTGATTGAAACTAGGACTAAGTATCTAAGGCTGCATTTAGACAGCCAGCCAAATTTGGATctttttttcccactaattggtcttttgagcaATTGCATcgtctcaacaaaaaaaaaagatcgGATTAGTTTAAAGACCAGAATTGGGCTACCTGTGTAAACTCAGCCAATGTGCATTGAAGTATAAAGCATGTTTGTGTGTAAAGTGCATGTGGAATGGAAGAGACTGTAGAGAAAGTCCCTATTGTTATTCTAATGGTGCAGTATTTATGTTCATAATGTTATTTAGCAATACTTCAAAGCAATCCTTCAGAATGGGTATGAGATGTTGCTGTTAGTCTGTTTTTATACAGTTTCGCATTGATTGATGTTAGATATTAGTTGCTATTTATTTCAATTGCATGTTAATGTACATGGTTCTGTTGGTTGTTATTTTTGTCTTATATACCACAGACAAAATGATGCACTGACTGTCCCAACTTCTTTGTGAAGTAACGCACTTTTGATTTCATAggtaatgtactgtatgacaaAGGATATTCAAGTGTTTTAAACGTGTTTTTGTTCTTTTAAATAAAAATAGAGGCTTATTGAAGTCT

Function

symbol description
panx1 Enables channel activity; identical protein binding activity; and signaling receptor binding activity. Involved in calcium ion transport and positive regulation of interleukin-1 beta production. Located in bleb; endoplasmic reticulum; and plasma membrane.

NR:

description
pannexin-1

GO:

id name namespace
GO:0005921 gap junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03443 PANX1; pannexin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990178.1 True 3729 mRNA 0.44 6 36277054 36289721

Neighbor

gene id symbol gene type direction distance location
ercc6l ercc6l coding downstream 159294 36104781 ~ 36117760 (-)
LOC110533762 LOC106603377 coding downstream 174406 36086295 ~ 36102648 (-)
LOC110533759 LOC106603378 coding downstream 193945 36059198 ~ 36083109 (-)
LOC110533758 LOC106603379 coding downstream 218689 35990545 ~ 36058365 (-)
LOC110533756 LOC106603382 coding downstream 419928 35824965 ~ 35857126 (-)
epd om-i coding upstream 3592 36293313 ~ 36295517 (-)
LOC110533773 LOC106603370 coding upstream 14012 36303733 ~ 36341819 (-)
LOC110533100 LOC106567837 coding upstream 109219 36398940 ~ 36592948 (-)
LOC118966763 NA coding upstream 308651 36598367 ~ 36604502 (-)
tmprss13b LOC106603367 coding upstream 328410 36618131 ~ 36635441 (-)
G883440 NA non-coding downstream 94014 36181976 ~ 36183040 (-)
G883434 NA non-coding downstream 103605 36173028 ~ 36173449 (-)
G883115 NA non-coding downstream 404334 35872465 ~ 35872720 (-)
G883112 NA non-coding downstream 405320 35871515 ~ 35871734 (-)
G883030 NA non-coding downstream 533954 35690518 ~ 35743100 (-)
G883733 NA non-coding upstream 48811 36338532 ~ 36338783 (-)
G883736 NA non-coding upstream 54103 36343824 ~ 36344118 (-)
G883737 NA non-coding upstream 54504 36344225 ~ 36344469 (-)
G883738 NA non-coding upstream 54838 36344559 ~ 36344786 (-)
G883741 NA non-coding upstream 60417 36350138 ~ 36350433 (-)
G883128 NA other downstream 396103 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 677969 35598317 ~ 35599085 (-)
G882631 NA other downstream 848846 35427249 ~ 35428208 (-)
G882539 NA other downstream 955348 35320814 ~ 35321706 (-)
G882578 NA other downstream 972999 35302914 ~ 35304055 (-)
G883753 NA other upstream 100276 36389997 ~ 36390914 (-)
G883754 NA other upstream 101382 36391103 ~ 36392527 (-)
scn4bb LOC106603364 other upstream 369797 36652707 ~ 36665717 (-)
G884736 NA other upstream 1027196 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 1308912 37518096 ~ 37704039 (-)

Expression


Co-expression Network