epd (om-i)


Basic Information

Item Value
gene id epd
gene name om-i
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36293313 ~ 36295517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124693.2
ACAGTACCTGGAACCACTTGGAGTCGTGATCATCCTTTCTGAGTTGTGCAGTTTGAGTGTTAACCTCAGTCTCCCTCCACGAGAAGATGCAGGCCTTTGCCGTCGCTGCCCTCTCCATCTGGCTGTGTCTGGGTGCCACCACCCTGGCAGAGTCCCACGGCCCACAGCACTGCACATCACCTAATATGACTGGGGTCCTGACTGTGCTGGCCCTTACAGGAGGTGAAATCAAGGCAACTGGACATTACAGCTATGACTCGACGGACAAGAAGATACGTTTCACTGAAAGTGAGATGCACCTCAACAAGACTGAACATCTGGAGGACTACCTGATGCTATTTGAAGAGGGGGTCTTCTATGACATTGACATGAAGAACCAGTCCTGTAAGAAGATGTCTCTGCACTCTCATGCTCACGCTCTGGAACTCCCCGCTGGTGCAGCCCATCAGGTTGAGCTGTTTTTGGGGAGTGACACTGTTCAGGAGGAGAACATCAAAGTGAACATATGGACGGGATCCGTGCCAGAGACTAAGGGCCAGTATTTTTTGTCTACTACTGTGGGAGAATGTCTACCACTCAGCACTTTCTACTCAACTGATTCCATGACACTCCTCTTCAGCAATTCCGAAGTGGTCACTGAGGTGAAAGCCCCTGAAGTATTCAATCTGCCGTCTTTCTGTGAGGGTGTGGAGCTGGAGGAGGCTCCTGAGGGCCAGAAGAATGACTTCTTTAGTCTGTTCAACAGTGTCTAAGACAGTGGCACCAGGACCTCCAGCCCCAACCAACCAAGAGTGTGGCCAGCTAATCCTCCTagttgtttctctccctctcataaCTACATTTGAGTGTTTCATTGCAAATTCTTCTCTTCTGTTAGACCAGATATATATCATAATATACTTTATTTGATTATTCCTCTTTGAAGACATTGCATAAAGATTAATCAGATGAAAAAAGGAAAGTTAATGTTAAGTTGTCATGTTAATGTAATCTCTACGTTTGAACGGGATATAAGGGGATATAACGTTTGTAATTTACATTATTAATTTGTCACTTAAAGTTGCTAATGCGTAGGAGGTCTGCATAGGCAAATGAGATAATAAAAACTCAACATCTTT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124693.2 True 1118 mRNA 0.45 6 36293313 36295517

Neighbor

gene id symbol gene type direction distance location
LOC110533772 panx1 coding downstream 3592 36277054 ~ 36289721 (-)
ercc6l ercc6l coding downstream 175553 36104781 ~ 36117760 (-)
LOC110533762 LOC106603377 coding downstream 190665 36086295 ~ 36102648 (-)
LOC110533759 LOC106603378 coding downstream 210204 36059198 ~ 36083109 (-)
LOC110533758 LOC106603379 coding downstream 234948 35990545 ~ 36058365 (-)
LOC110533773 LOC106603370 coding upstream 8216 36303733 ~ 36341819 (-)
LOC110533100 LOC106567837 coding upstream 103423 36398940 ~ 36592948 (-)
LOC118966763 NA coding upstream 302855 36598367 ~ 36604502 (-)
tmprss13b LOC106603367 coding upstream 322614 36618131 ~ 36635441 (-)
scn4bb LOC106603364 coding upstream 357190 36652707 ~ 36665717 (-)
G883440 NA non-coding downstream 110273 36181976 ~ 36183040 (-)
G883434 NA non-coding downstream 119864 36173028 ~ 36173449 (-)
G883115 NA non-coding downstream 420593 35872465 ~ 35872720 (-)
G883112 NA non-coding downstream 421579 35871515 ~ 35871734 (-)
G883030 NA non-coding downstream 550213 35690518 ~ 35743100 (-)
G883733 NA non-coding upstream 43015 36338532 ~ 36338783 (-)
G883736 NA non-coding upstream 48307 36343824 ~ 36344118 (-)
G883737 NA non-coding upstream 48708 36344225 ~ 36344469 (-)
G883738 NA non-coding upstream 49042 36344559 ~ 36344786 (-)
G883741 NA non-coding upstream 54621 36350138 ~ 36350433 (-)
G883128 NA other downstream 412362 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 694228 35598317 ~ 35599085 (-)
G882631 NA other downstream 865105 35427249 ~ 35428208 (-)
G882539 NA other downstream 971607 35320814 ~ 35321706 (-)
G882578 NA other downstream 989258 35302914 ~ 35304055 (-)
G883753 NA other upstream 94480 36389997 ~ 36390914 (-)
G883754 NA other upstream 95586 36391103 ~ 36392527 (-)
G884736 NA other upstream 1021400 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 1303116 37518096 ~ 37704039 (-)

Expression


Co-expression Network