LOC110533775 (LOC106603239)


Basic Information

Item Value
gene id LOC110533775
gene name LOC106603239
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36301854 ~ 36303664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618286.2
CACAGATTGCTATCTCTACAAGGTAAGTCTACTCTGTCTCTGTTCTTCTCACTCTAGCTAGTGTTGAGCAGTACAGATGTTCCATAGCAGGACCGCCGGTGGTAAACTCCTTTATCTCTATAGGGCTGGTTTAGATACTAAGAAGTCTGTGTTAGTGTGATGAGATAAAGATACTAGCTGCTCTAGTCAATCTGTATAGTTGAAGCATGACAGATTATGCAATAGAAATGTAAAAGcaatttccaattgagccgaAATATGCAGcttttaccgtgaatgcagtctgcTAACGCGGGAACATTGCATTTCAATCACACTGAAACTTCAGCGACATGGATTAAATAGAGCCCCGGTTAGAAAGCAATGAAGTTTTCGATTGAAGGCTAGTGCTAAATTGTCATGGATCTAACATTTGTATTGTGGTTGTTAAGTAATACATATAAGAGAGTTACCACAAGTTACCAACATATATTGAGAATTGATTCAGATAAGGCTGGCTATATTTGTTCTGCATGCCGACTTTCATTCATTGACAAATGTTGACATGATTTTGCAATTTAGCAATCactcatcctgtctctgtctcttccagaTGTCTGTTTGGTGGCAGGTTCTGTTTCTCCAGTTTTTCCTTACCCTGAGCTGTGTGTACCAATGTTGTGCATCCCCTCCAGGCCTACTCAAGTCCTACTCATACTCCCTCAAATCCATCAGATGCACCCACACTCGGGTACAGCAGCTGCTCAGGAGATATAAGGAGGAGCAGTTGGATAACAAGCAGTTTGAGGACAGAAGTCTGGAGTGGCAGACCCTACCCTCCCTCTCCACAGACTTCTACCACTGGCTTCAGATGAAGGACTGGGAGCGTCTGAGTGCTGCCTCTCGAGACCTGCACACCTTCTGGGCTCACCTGGACATGAAgagaagggagatagagagggaggaggttggACAGGGGGCAGCCCACAGGATGGGGAGCAGGGGCAAGCCAAAACCCAGCATACCTGAGAGAATACAGCACATTCTGACAGACCTGCGGGATCTCATGACAAAAGTCAACTTTCAGTTGAGATGTGTGAACAGCTCCAATGTAAGCCCCACCTCTCCCCCTGCCCTGACTCGTGCAGTGAGCACTCCCTCCAGCCACCAGGCCCCATCAAAGTCCCTGTGGACCAGCCGCCTGGAGGGCTACGTCATCCTCAGGGACCTGGAGCGCTACCTCACCAAGCTGGCCAGAGACTTCATCCTCCTGAAGACCAAACACAGAGGTCCTCCAGGTACCTAGCCCAGGGGCAGATAGACATGGTATGCATGGATTCATATTCATAATGCAAACTAGTACTGCACAAGCCTGTGACGGGTTGTGGTTAGAGTGGCTTTTAACTTATTTTGTGGAC

Function

NR:

description
uncharacterized protein LOC110533775

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618286.2 True 1397 mRNA 0.47 4 36301854 36303664

Neighbor

gene id symbol gene type direction distance location
LOC110533771 LOC106603372 coding upstream 45230 36248874 ~ 36256624 (+)
LOC110533770 LOC106603373 coding upstream 55539 36219367 ~ 36246315 (+)
fam76b LOC106603374 coding upstream 99007 36194574 ~ 36202847 (+)
LOC110533767 mtmr2 coding upstream 107637 36183235 ~ 36194217 (+)
LOC110533099 pde2a coding upstream 118792 36141669 ~ 36183062 (+)
LOC110533776 LOC106603369 coding downstream 46406 36350070 ~ 36377139 (+)
tmprss4b LOC106603365 coding downstream 342056 36645720 ~ 36650306 (+)
LOC110533779 LOC106603362 coding downstream 380202 36683866 ~ 36698702 (+)
LOC110533102 NA coding downstream 399054 36702718 ~ 36704449 (+)
LOC110533781 NA coding downstream 408287 36711951 ~ 36713863 (+)
G883473 om-i non-coding upstream 6282 36292302 ~ 36295572 (+)
G883508 NA non-coding upstream 10543 36291090 ~ 36291311 (+)
G883507 NA non-coding upstream 11187 36290442 ~ 36290667 (+)
G883444 NA non-coding upstream 97171 36204299 ~ 36204683 (+)
G883429 NA non-coding upstream 120878 36180743 ~ 36180976 (+)
G883513 LOC106603370 non-coding downstream 13440 36317104 ~ 36326443 (+)
G883523 NA non-coding downstream 29801 36333465 ~ 36333686 (+)
G883528 NA non-coding downstream 35839 36339503 ~ 36339836 (+)
G883529 NA non-coding downstream 36374 36340038 ~ 36340551 (+)
G883535 NA non-coding downstream 41237 36344901 ~ 36345134 (+)
LOC110533748 prps1 other upstream 615281 35674201 ~ 35686573 (+)
G882624 NA other upstream 885616 35414975 ~ 35416238 (+)
mogat3b LOC106603399 other upstream 980053 35307753 ~ 35321801 (+)
G882300 NA other upstream 1066629 35225097 ~ 35264333 (+)
LOC110533788 NA other downstream 495721 36799376 ~ 36801589 (+)
G883966 NA other downstream 545982 36849646 ~ 36851153 (+)
LOC110533845 LOC106603305 other downstream 2451845 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 5408663 41712327 ~ 41717292 (+)
G890228 NA other downstream 5774551 42078215 ~ 42154093 (+)

Expression


Co-expression Network