LOC118966763


Basic Information

Item Value
gene id LOC118966763
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36598367 ~ 36604502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053646.1
CCCAGTAGACATGTATTAGTGTTTAGTCTAGCCTggatgtctctgtctatctgggaCTGGCTTTCAGAGAGTACAGTCAGCCCCAGTAGACATGTATTAGTGTTCAGTCTAGCCTggatgtctctgtctatctgggaCTGGCTTTCAGAGAGTACAGTCAGCCCCAGTAGACATGTATTAGTGTTTAGTCTAGCTTggatgtctctgtctatctgggaTTGGCTTTCAGAGAGTTTATCAATGATCTATTTACTCTATTTACATGATTGTTGATGACCTTGTCAGATAACAAGACAGAAGATCACTCTGAATATATGGCTATGCACTGTTGACCTGTtaatgtgtctggtgtgtgtgtttgtgtgtgcatgcgtgcgtgtgcgctCATGTTTGTTTGTGCACGCGTGTCTGTGTCTGCGTGTCCATGAATGCACGGGAGAGAACAGATTAAATTCTATGTTTTTTTGCTGCTGTTGTAATAGCTCTACTTCACACTGCCTATCTCAGTAGAGTCTCAACTCAGTCCAACTGAAGATcctgacacacagacactatGGGTGGAGAAACATCACATGACATCTCAGACTACGACTTTAACTATGGTAAAAAGCTCAGCTGTTGGAAGGGTCATGCAAAGCCTGTGAACCCCGCTGAACCTTGAAACAAGACATTGACCAGAGACAGCCATGATTGGACCCAGGGACATCCCTATGACATCAAAACCTTGGCAAGATGAGGGATCACTATACATTTGTATTTTACTAATGGAGGAACAATATGAAGAGTGATGGGTGGTGACTGTCACATTACAATAATATAAAATTAGCATTAATAAAACCTTTTTTTTC
>TU1005666
CGTGTCTGTGTCTGCGTGTCCATGAATGCACGGGAGAGAACAGATTAAATTCTATGTTTTTTTGCTGCTGTTGTAATAGCTCTACTTCACACTGCCTATCTCAGTAGAGTCTCAACTCAGTCCAACTGAAGATcctgacacacagacactatGGGTGGAGAAACATCACATGACATCTCAGACTACGACTTTAACTATGGTAAAAAGCTCAGCTGTTGGAAGGGTCATGCAAAGCCTGTGAACCCCGCTGAACCTTGAAACAAGACATTGACCAGAGACAGCCATGATTGGACCCAGGGACATCCCTATGACATCAAAACCTTGGCAAGATGAGGGATCACTATACATTTGTATTTTACTAATGGAGGAACAATATGAAGAGTGATGGGTGGTGACTGTCACATTACAATAATATAAAATTAGCATTAATAAAACCTTTTTTTTCCATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053646.1 False 848 mRNA 0.42 5 36598372 36604502
TU1005666 True 450 lncRNA 0.41 5 36598367 36604099

Neighbor

gene id symbol gene type direction distance location
LOC110533100 LOC106567837 coding downstream 5424 36398940 ~ 36592948 (-)
LOC110533773 LOC106603370 coding downstream 256553 36303733 ~ 36341819 (-)
epd om-i coding downstream 302855 36293313 ~ 36295517 (-)
LOC110533772 panx1 coding downstream 308651 36277054 ~ 36289721 (-)
ercc6l ercc6l coding downstream 480612 36104781 ~ 36117760 (-)
tmprss13b LOC106603367 coding upstream 13629 36618131 ~ 36635441 (-)
scn4bb LOC106603364 coding upstream 48205 36652707 ~ 36665717 (-)
LOC110533101 LOC106603363 coding upstream 67865 36672252 ~ 36682903 (-)
LOC110533780 LOC106603359 coding upstream 99945 36704447 ~ 36711929 (-)
LOC110533103 tagl2 coding upstream 129214 36733716 ~ 36746690 (-)
G883822 NA non-coding downstream 19919 36578014 ~ 36578453 (-)
G883791 NA non-coding downstream 33473 36530408 ~ 36564899 (-)
G883808 NA non-coding downstream 44432 36552139 ~ 36553940 (-)
G883765 NA non-coding downstream 111830 36428571 ~ 36486542 (-)
G883768 NA non-coding downstream 153272 36442425 ~ 36445100 (-)
G884366 NA non-coding upstream 34756 36639258 ~ 36639500 (-)
G884367 NA non-coding upstream 35724 36640226 ~ 36640448 (-)
G884379 NA non-coding upstream 53328 36657830 ~ 36658233 (-)
G884402 NA non-coding upstream 98051 36702553 ~ 36702772 (-)
G883754 NA other downstream 205845 36391103 ~ 36392527 (-)
G883753 NA other downstream 207458 36389997 ~ 36390914 (-)
G883128 NA other downstream 717421 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 999287 35598317 ~ 35599085 (-)
G882631 NA other downstream 1170164 35427249 ~ 35428208 (-)
G884736 NA other upstream 712415 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 994131 37518096 ~ 37704039 (-)
G885767 NA other upstream 1634448 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2579196 39183698 ~ 39185578 (-)

Expression


Co-expression Network