scn4bb (LOC106603364)


Basic Information

Item Value
gene id scn4bb
gene name LOC106603364
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36652707 ~ 36665717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990186.1
gaagggcagGAAGGCACtgagccaagagagagagagcagggacaaGTTGAGAGAAAGCCAGAGGGGTAGGCTAGCAGGCAAAGGGAAAAAGAAACTGGGGCTCTGCTATCCAGGAAGAAGAGACAGGACCGTCCGATCCAGCAGCCATAAGTCCCGGGGCTACTGCATCAGCACTCCTcctgtccatcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctttctctctctctctaactggggCTGCAGCCTGCCTTTCTCTGCAGAGGAAGCGCTGGCTGGTGGAATCTACTTGAATGCACCCTGACTGACTGGTTGTGCGCAGTGATTCTCCCCTGCTCTGCCGTGCGTTTGTCCTCACTGACTCAGCTGTGCTCTGTAGTCAGCCTGCTGGTCCAGCCTCTCGGGAACACAGCCACAGGAAGAGTCCTTCTGACAGGAGTGTTGTGGGGCTGGCAGGCAGACGCACCACAACCAGGACTGGCTAACAACACAGTGGGACGTGGTACCTCGGTTGGGATCAGATCAGACACCCAGGCACAACACACAACCAGACCAGTGGGACTCTGGGTTACATCCACCTGACCACCAGAGGAGTTTTTGACGGGATAACTCCAGCCCAACAGACCCCGGGCTGGATCCCACAACAGGGGGTGTTTTGGACGGGTTCAGACTGCCATGGAAGTCCAGGGGAGTGGGGCTGAGCAGCCCAGGTCCAGGTGTCTGTTCTCCAGCCTGATCATCACTCTGCTGCTCAgtgTGTGGTCTGCTCAGGGCCTGGAGATGTCCACAGGGAAGGTCCCATTCATGGAGGCGCTGAACGGCAGTACTGTGCTGCTACCCTGCACCTACGCCAGCTGTATCGGCATCAAAAACCTTTACTTCAACTGGCAGTACAATGACAACGGCACTATGCAGAAGGTTTGTGAGTCAGTGATTCCGTCAGACGGGATGGATCCTCATCCAGTGAGTATCTACCGGGAGCGGGTGGAGTTTATCGGCACCAGTGATCACAACAACATCTCCATCCTGCTTTGGAACATCACCTTTGAGGACGAGGGCCAGTACACCTGCTTCGGACGCAACCCCAAAGAGAAGGGCAAGAACCACAGCGCTATCTTTACCCTTGTCGTGGTGGACGAGTTACGAGTGGTGGACAACACTCTCACCATCATAATTGCTTCTGCAGTGGGCGGAGCCATCGCCCTGCTGATGACTTTCATGCTGGTGAAGAACTTCATCCTTTTCGTTCTCTTCAAAATCGAGGAGAGGAAAAAGATCGAGTGCCTTGTACAATCTTCCTCAGCTGATGAAACAAACAATGTCTCAGGATCCAAAACTTCAAAACCACTGACACCAAAGAAGAAATGAGAGTACTTGCATGTATGTACATCCATATATAAACATACAGTTATAtctatgcatatactgtatttttaTGCATAAACATGTGTATTGACATGTGACTCCATGGGCAGGCTTCTTGGGCAGGTTTTTTGGACTGAGAAGCACGTCTGATGGAGAGACTTCATTGAAAGTGTTTGTTAGTCCAATAAGCTTAAGCTGTGTCCAAGAAACCGCTCCCATACGTTCTAGttgatatttaatttttttttaaattcagacCTGAACCTAGGACTGTTTTTCATATTATATTACACATAAAATATATGCTTAAGACGGGGAATAATGCTATGTAATAATGCTGTTTAAACTGTGTTGGATCCTACTCCTCTCTCCACCAACCAACCCCACTGCCCTGGGTTCAACTGAAACTGTCTACAAAATCAAACTTCAAAATGAAGAAAATGTATGGGATATTATTCACAGTTTAATTCAATCTCCAGTGACATTATGCCACTTCAGATCCAGCTTTAGTCCTATTGCACAATACCACTGATTCGTATCAAGTTTAGTTTAGTGCTGTTTAGAATACAATATTAACTCTGCTATTCCAAAAGTAATTAATTAACCCTGTTGTATCATATTTAGAAACTAGGGTCTCTAAAGGGTTTTGCTGCGGTGAGGAGTGAGAAAGGATCCAGTTCAGAACATTATACATTTTCTTTGCTTGATATAAAACACTGGTGCCTGTTAGCGCTTCTATCTTCCTCTGCTGGTAGGAAGACTAAATACTGCAAAACCATTTACCAAACGCAGCAAAACGCAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATAATACAAGCTGATGAATGAAATTATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCC
>XM_036990187.1
gaagggcagGAAGGCACtgagccaagagagagagagcagggacaaGTTGAGAGAAAGCCAGAGGGGTAGGCTAGCAGGCAAAGGGAAAAAGAAACTGGGGCTCTGCTATCCAGGAAGAAGAGACAGGACCGTCCGATCCAGCAGCCATAAGTCCCGGGGCTACTGCATCAGCACTCCTcctgtccatcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctttctctctctctctaactggggCTGCAGCCTGCCTTTCTCTGCAGAGGAAGCGCTGGCTGGTGGAATCTACTTGAATGCACCCTGACTGACTGGTTGTGCGCAGTGATTCTCCCCTGCTCTGCCGTGCGTTTGTCCTCACTGACTCAGCTGTGCTCTGTAGTCAGCCTGCTGGTCCAGCCTCTCGGGAACACAGCCACAGGAAGAGACAGTCCTTCTGACAGGAGTGTTGTGGGGCTGGCAGGCAGACGCACCACAACCAGGACTGGCTAACAACACAGTGGGACGTGGTACCTCGGTTGGGATCAGATCAGACACCCAGGCACAACACACAACCAGACCAGTGGGACTCTGGGTTACATCCACCTGACCACCAGAGGAGTTTTTGACGGGATAACTCCAGCCCAACAGACCCCGGGCTGGATCCCACAACAGGGGGTGTTTTGGACGGGTTCAGACTGCCATGGAAGTCCAGGGGAGTGGGGCTGAGCAGCCCAGGTCCAGGTGTCTGTTCTCCAGCCTGATCATCACTCTGCTGCTCAgtgTGTGGTCTGCTCAGGGCCTGGAGATGTCCACAGGGAAGGTCCCATTCATGGAGGCGCTGAACGGCAGTACTGTGCTGCTACCCTGCACCTACGCCAGCTGTATCGGCATCAAAAACCTTTACTTCAACTGGCAGTACAATGACAACGGCACTATGCAGAAGGTTTGTGAGTCAGTGATTCCGTCAGACGGGATGGATCCTCATCCAGTGAGTATCTACCGGGAGCGGGTGGAGTTTATCGGCACCAGTGATCACAACAACATCTCCATCCTGCTTTGGAACATCACCTTTGAGGACGAGGGCCAGTACACCTGCTTCGGACGCAACCCCAAAGAGAAGGGCAAGAACCACAGCGCTATCTTTACCCTTGTCGTGGTGGACGAGTTACGAGTGGTGGACAACACTCTCACCATCATAATTGCTTCTGCAGTGGGCGGAGCCATCGCCCTGCTGATGACTTTCATGCTGGTGAAGAACTTCATCCTTTTCGTTCTCTTCAAAATCGAGGAGAGGAAAAAGATCGAGTGCCTTGTACAATCTTCCTCAGCTGATGAAACAAACAATGTCTCAGGATCCAAAACTTCAAAACCACTGACACCAAAGAAGAAATGAGAGTACTTGCATGTATGTACATCCATATATAAACATACAGTTATAtctatgcatatactgtatttttaTGCATAAACATGTGTATTGACATGTGACTCCATGGGCAGGCTTCTTGGGCAGGTTTTTTGGACTGAGAAGCACGTCTGATGGAGAGACTTCATTGAAAGTGTTTGTTAGTCCAATAAGCTTAAGCTGTGTCCAAGAAACCGCTCCCATACGTTCTAGttgatatttaatttttttttaaattcagacCTGAACCTAGGACTGTTTTTCATATTATATTACACATAAAATATATGCTTAAGACGGGGAATAATGCTATGTAATAATGCTGTTTAAACTGTGTTGGATCCTACTCCTCTCTCCACCAACCAACCCCACTGCCCTGGGTTCAACTGAAACTGTCTACAAAATCAAACTTCAAAATGAAGAAAATGTATGGGATATTATTCACAGTTTAATTCAATCTCCAGTGACATTATGCCACTTCAGATCCAGCTTTAGTCCTATTGCACAATACCACTGATTCGTATCAAGTTTAGTTTAGTGCTGTTTAGAATACAATATTAACTCTGCTATTCCAAAAGTAATTAATTAACCCTGTTGTATCATATTTAGAAACTAGGGTCTCTAAAGGGTTTTGCTGCGGTGAGGAGTGAGAAAGGATCCAGTTCAGAACATTATACATTTTCTTTGCTTGATATAAAACACTGGTGCCTGTTAGCGCTTCTATCTTCCTCTGCTGGTAGGAAGACTAAATACTGCAAAACCATTTACCAAACGCAGCAAAACGCAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATAATACAAGCTGATGAATGAAATTATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCC
>XM_036990188.1
gaagggcagGAAGGCACtgagccaagagagagagagcagggacaaGTTGAGAGAAAGCCAGAGGGGTAGGCTAGCAGGCAAAGGGAAAAAGAAACTGGGGCTCTGCTATCCAGGAAGAAGAGACAGGACCGTCCGATCCAGCAGCCATAAGTCCCGGGGCTACTGCATCAGCACTCCTcctgtccatcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctttctctctctctctaactggggCTGCAGCCTGCCTTTCTCTGCAGAGGAAGCGCTGGCTGGTGGAATCTACTTGAATGCACCCTGACTGACTGGTTGTGCGCAGTGATTCTCCCCTGCTCTGCCGTGCGTTTGTCCTCACTGACTCAGCTGTGCTCTGTAGTCAGCCTGCTGGTCCAGCCTCTCGGGAACACAGCCACAGGAAGAGGAGTGTTGTGGGGCTGGCAGGCAGACGCACCACAACCAGGACTGGCTAACAACACAGTGGGACGTGGTACCTCGGTTGGGATCAGATCAGACACCCAGGCACAACACACAACCAGACCAGTGGGACTCTGGGTTACATCCACCTGACCACCAGAGGAGTTTTTGACGGGATAACTCCAGCCCAACAGACCCCGGGCTGGATCCCACAACAGGGGGTGTTTTGGACGGGTTCAGACTGCCATGGAAGTCCAGGGGAGTGGGGCTGAGCAGCCCAGGTCCAGGTGTCTGTTCTCCAGCCTGATCATCACTCTGCTGCTCAgtgTGTGGTCTGCTCAGGGCCTGGAGATGTCCACAGGGAAGGTCCCATTCATGGAGGCGCTGAACGGCAGTACTGTGCTGCTACCCTGCACCTACGCCAGCTGTATCGGCATCAAAAACCTTTACTTCAACTGGCAGTACAATGACAACGGCACTATGCAGAAGGTTTGTGAGTCAGTGATTCCGTCAGACGGGATGGATCCTCATCCAGTGAGTATCTACCGGGAGCGGGTGGAGTTTATCGGCACCAGTGATCACAACAACATCTCCATCCTGCTTTGGAACATCACCTTTGAGGACGAGGGCCAGTACACCTGCTTCGGACGCAACCCCAAAGAGAAGGGCAAGAACCACAGCGCTATCTTTACCCTTGTCGTGGTGGACGAGTTACGAGTGGTGGACAACACTCTCACCATCATAATTGCTTCTGCAGTGGGCGGAGCCATCGCCCTGCTGATGACTTTCATGCTGGTGAAGAACTTCATCCTTTTCGTTCTCTTCAAAATCGAGGAGAGGAAAAAGATCGAGTGCCTTGTACAATCTTCCTCAGCTGATGAAACAAACAATGTCTCAGGATCCAAAACTTCAAAACCACTGACACCAAAGAAGAAATGAGAGTACTTGCATGTATGTACATCCATATATAAACATACAGTTATAtctatgcatatactgtatttttaTGCATAAACATGTGTATTGACATGTGACTCCATGGGCAGGCTTCTTGGGCAGGTTTTTTGGACTGAGAAGCACGTCTGATGGAGAGACTTCATTGAAAGTGTTTGTTAGTCCAATAAGCTTAAGCTGTGTCCAAGAAACCGCTCCCATACGTTCTAGttgatatttaatttttttttaaattcagacCTGAACCTAGGACTGTTTTTCATATTATATTACACATAAAATATATGCTTAAGACGGGGAATAATGCTATGTAATAATGCTGTTTAAACTGTGTTGGATCCTACTCCTCTCTCCACCAACCAACCCCACTGCCCTGGGTTCAACTGAAACTGTCTACAAAATCAAACTTCAAAATGAAGAAAATGTATGGGATATTATTCACAGTTTAATTCAATCTCCAGTGACATTATGCCACTTCAGATCCAGCTTTAGTCCTATTGCACAATACCACTGATTCGTATCAAGTTTAGTTTAGTGCTGTTTAGAATACAATATTAACTCTGCTATTCCAAAAGTAATTAATTAACCCTGTTGTATCATATTTAGAAACTAGGGTCTCTAAAGGGTTTTGCTGCGGTGAGGAGTGAGAAAGGATCCAGTTCAGAACATTATACATTTTCTTTGCTTGATATAAAACACTGGTGCCTGTTAGCGCTTCTATCTTCCTCTGCTGGTAGGAAGACTAAATACTGCAAAACCATTTACCAAACGCAGCAAAACGCAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATAATACAAGCTGATGAATGAAATTATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCC
>TU1006338
GACTGACTGGTTGTGCGCAGTGATTCTCCCCTGCTCTGCCGTGCGTTTGTCCTCACTGACTCAGCTGTGCTCTGTAGTCAGCCTGCTGGTCCAGCCTCTCGGGAACACAGCCACAGGAAGAGGAGTGTTGTGGGGCTGGCAGGCAGACGCACCACAACCAGGACTGGCTAACAACACAGTGGGACGTGGTACCTCGGTTGGGATCAGATCAGACACCCAGGCACAACACACAACCAGACCAGTGGGACTCTGGGTTACATCCACCTGACCACCAGAGGAGTTTTTGACGGGATAACTCCAGCCCAACAGACCCCGGGCTGGATCCCACAACAGGGGGTGTTTTGGACGGGTTCAGACTGCCATGGAAGTCCAGGGGAGTGGGGCTGAGCAGCCCAGGTCCAGGTGTCTGTTCTCCAGCCTGATCATCACTCTGCTGCTCAgtgTGTGGTCTGCTCAGGGCCTGGAGATGTCCACAGGGAAGGTCCCATTCATGGAGGCGCTGAACGGCAGTACTGTGCTGCTACCCTGCACCTACGCCAGCTGTATCGGCATCAAAAACCTTTACTTCAACTGGCAGTACAATGACAACGGCACTATGCAGAAGG

Function

NR:

description
PREDICTED: sodium channel subunit beta-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990186.1 False 2794 mRNA 0.45 6 36652707 36665717
XM_036990187.1 False 2798 mRNA 0.45 6 36652707 36665717
XM_036990188.1 False 2782 mRNA 0.45 6 36652707 36665717
TU1006338 True 605 TUCP 0.58 3 36659518 36665357

Neighbor

gene id symbol gene type direction distance location
tmprss13b LOC106603367 coding downstream 17266 36618131 ~ 36635441 (-)
LOC118966763 NA coding downstream 48205 36598367 ~ 36604502 (-)
LOC110533100 LOC106567837 coding downstream 59759 36398940 ~ 36592948 (-)
LOC110533773 LOC106603370 coding downstream 310888 36303733 ~ 36341819 (-)
epd om-i coding downstream 357190 36293313 ~ 36295517 (-)
LOC110533101 LOC106603363 coding upstream 6650 36672252 ~ 36682903 (-)
LOC110533780 LOC106603359 coding upstream 38730 36704447 ~ 36711929 (-)
LOC110533103 tagl2 coding upstream 67999 36733716 ~ 36746690 (-)
LOC110533783 LOC106603358 coding upstream 115217 36780934 ~ 36785487 (-)
LOC110533786 LOC106603354 coding upstream 131012 36796729 ~ 36799658 (-)
G884367 NA non-coding downstream 12259 36640226 ~ 36640448 (-)
G884366 NA non-coding downstream 13207 36639258 ~ 36639500 (-)
G883822 NA non-coding downstream 74254 36578014 ~ 36578453 (-)
G883791 NA non-coding downstream 87808 36530408 ~ 36564899 (-)
G884402 NA non-coding upstream 36836 36702553 ~ 36702772 (-)
G884409 NA non-coding upstream 56834 36722551 ~ 36722905 (-)
G884410 NA non-coding upstream 57579 36723296 ~ 36723541 (-)
G884417 NA non-coding upstream 67001 36732718 ~ 36732949 (-)
G883754 NA other downstream 260180 36391103 ~ 36392527 (-)
G883753 NA other downstream 261793 36389997 ~ 36390914 (-)
G883128 NA other downstream 771756 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1053622 35598317 ~ 35599085 (-)
G882631 NA other downstream 1224499 35427249 ~ 35428208 (-)
G884736 NA other upstream 651200 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 932916 37518096 ~ 37704039 (-)
G885767 NA other upstream 1573233 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2517981 39183698 ~ 39185578 (-)
G887329 NA other upstream 2551596 39217313 ~ 39217738 (-)
G884379 NA non-coding downstream 1285 36657830 ~ 36658233 (-)

Expression


Co-expression Network