LOC110533783 (LOC106603358)


Basic Information

Item Value
gene id LOC110533783
gene name LOC106603358
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36780934 ~ 36785487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618297.2
tccctcccctctctctccacctctctcatcATTGTTAAGGTGGTGTGAGTGGCAGGGCTAGGAGGAGGACACACAGCATTAGCACGGGCATCCCCAGCATCATCACTCAGCATCCCTTCACCTAAAAGAATGGCAGAGGGCTCAGTATCAGAAGCAGAGGTAGAGACGGCCTTCAAGAAGTTTGCCATTCATGGGGACACCAAGGCTACTGGGAAGGAGATGAACGGCAAGAACTTTGCCAAACTCTGCAAGGACTGCCGGGTTATCGACGGCAAGAACGTCACTGCCACCGACGTGGACATCGTCTTCACTAAAGTCAAGGCGAAGACAGCTCGTGTGATCACCTTTGAGCAATTCAGCCAGGCCCTGTCAGAGTTGGCCCCGAAACGTTTCAAAGGGAAGGGCCAGGAGGAGACGCTGCAGCAGCTCTATGGCCTCATAGCAGGGAAGGAGCCCTCCAACGCGGGCGTCACCAAAGTGGCCAAGGCAGCGGCGgtggacagactgacagacaccaCCAAATTCACGGGGGCACACAAGGAGCGTTTTGACGAGACTGGCAAAGGGAAGGGCAAGGCTGGGCGAGAGGAGATCCCAGATGCCAGTGGCTATGTGGGGGCCTACAAGGGCAAGGGCACCTATGAGGATAAGGTCAAGGAAGCATAGGCAGGATAAAGGAAACAGAGTGAGAGCTACTCAGACCCTACCATTTACCCCAAAGGCACCCTAAATACTGGACTTTCAATTAGAACTGAGAACTGAACAGGTACAGGAGGATGGACTGTTCAGTCACTGGATACCATAGTATCAGGGGAGGCCGCAATTGTCAACAATAATTtcttcttaacggacttgcctagttaaataaaggttacatttaaaaatgatAAATATATCCTCAGAGTTACAGGGTGGGGTTGGGGTGGTAGGATGGAGAGGGCAGGTGTAACGCTTCCAGTGGGGAGTAAACCTGAATATGAAACATTACCTGTATTAGTTGATAAAGAATAATGATTTCGTAGGGAGAAAATGTACTTAAATAATCTATATACTCCCCCTTCGTAAATGCTCCAGCCCAACCCCTGACCCCATCCCTCCCAGCTTTACTAAACACCTCAGTCAGCACACTTATTACTACAGGAAGTAACTCAGCTCCCTACTACTACAGAAAGTAACTCAGCTCCCTACTACTACAGAAAGTAACTCAGCTTCCTACTACTACAGGAAGTAACTCAGCTCCCTACTACTACAGGAAGTAACTCAGCTCCCTACTACTACAGGAAGTAACTCAGCTTCCTACTACTACAGGAAGTAACTCAGCTTTCTACTACTATACACATTGTGCCTTATCATTGAGGTTGCTTCTAACACTAATGCCCTGGTATTATGCACTTCCTTCACCCACATCCTTCTCAACTGATGTACATAGCTTAATCTGCTCTGCTATAATAACTGTATATTGGAAATGTAAATGGATGAattaataaatacattattagaTGAAGTAATAGATTAATGAATGGTGAATACATTCAAATATATATCAACTGTATCTGGACATTATAGTCCTTTGCTTGTGCTGTAGATTGGACACATGGAATAAGAGACAGAtgagtcctctcctcctctgagaAGATGAGAACACTGTCTGTTGGAGGACTGGGAGCCTCCTGACTGCACTGCATTGTTGTTCTGTCCTTCCTGATCACTGTCCAGTCtagctgtgtctccctctgttctgAAGAGCTGGAAAATACTATGTAAActctaaaataaatcactgagcAGCAAATCAGA
>XM_021618296.2
tctctctctctccccaccctctgttcttcatctccctcccctctctctccacctctctcatcATTGTTAAGGTGGTGTGAGTGGCAGGGCTAGGAGGAGGACACACAGCATTAGCACGGGCATCCCCAGCATCATCACTCAGCATCCCTTCACCTAAAAGGACAGAATGGCAGAGGGCTCAGTATCAGAAGCAGAGGTAGAGACGGCCTTCAAGAAGTTTGCCATTCATGGGGACACCAAGGCTACTGGGAAGGAGATGAACGGCAAGAACTTTGCCAAACTCTGCAAGGACTGCCGGGTTATCGACGGCAAGAACGTCACTGCCACCGACGTGGACATCGTCTTCACTAAAGTCAAGGCGAAGACAGCTCGTGTGATCACCTTTGAGCAATTCAGCCAGGCCCTGTCAGAGTTGGCCCCGAAACGTTTCAAAGGGAAGGGCCAGGAGGAGACGCTGCAGCAGCTCTATGGCCTCATAGCAGGGAAGGAGCCCTCCAACGCGGGCGTCACCAAAGTGGCCAAGGCAGCGGCGgtggacagactgacagacaccaCCAAATTCACGGGGGCACACAAGGAGCGTTTTGACGAGACTGGCAAAGGGAAGGGCAAGGCTGGGCGAGAGGAGATCCCAGATGCCAGTGGCTATGTGGGGGCCTACAAGGGCAAGGGCACCTATGAGGATAAGGTCAAGGAAGCATAGGCAGGATAAAGGAAACAGAGTGAGAGCTACTCAGACCCTACCATTTACCCCAAAGGCACCCTAAATACTGGACTTTCAATTAGAACTGAGAACTGAACAGGTACAGGAGGATGGACTGTTCAGTCACTGGATACCATAGTATCAGGGGAGGCCGCAATTGTCAACAATAATTtcttcttaacggacttgcctagttaaataaaggttacatttaaaaatgatAAATATATCCTCAGAGTTACAGGGTGGGGTTGGGGTGGTAGGATGGAGAGGGCAGGTGTAACGCTTCCAGTGGGGAGTAAACCTGAATATGAAACATTACCTGTATTAGTTGATAAAGAATAATGATTTCGTAGGGAGAAAATGTACTTAAATAATCTATATACTCCCCCTTCGTAAATGCTCCAGCCCAACCCCTGACCCCATCCCTCCCAGCTTTACTAAACACCTCAGTCAGCACACTTATTACTACAGGAAGTAACTCAGCTCCCTACTACTACAGAAAGTAACTCAGCTCCCTACTACTACAGAAAGTAACTCAGCTTCCTACTACTACAGGAAGTAACTCAGCTCCCTACTACTACAGGAAGTAACTCAGCTCCCTACTACTACAGGAAGTAACTCAGCTTCCTACTACTACAGGAAGTAACTCAGCTTTCTACTACTATACACATTGTGCCTTATCATTGAGGTTGCTTCTAACACTAATGCCCTGGTATTATGCACTTCCTTCACCCACATCCTTCTCAACTGATGTACATAGCTTAATCTGCTCTGCTATAATAACTGTATATTGGAAATGTAAATGGATGAattaataaatacattattagaTGAAGTAATAGATTAATGAATGGTGAATACATTCAAATATATATCAACTGTATCTGGACATTATAGTCCTTTGCTTGTGCTGTAGATTGGACACATGGAATAAGAGACAGAtgagtcctctcctcctctgagaAGATGAGAACACTGTCTGTTGGAGGACTGGGAGCCTCCTGACTGCACTGCATTGTTGTTCTGTCCTTCCTGATCACTGTCCAGTCtagctgtgtctccctctgttctgAAGAGCTGGAAAATACTATGTAAActctaaaataaatcactgagcAGCAAATCAGA

Function

NR:

description
PREDICTED: tubulin polymerization-promoting protein family member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618297.2 False 1797 mRNA 0.47 4 36780934 36785455
XM_021618296.2 True 1834 mRNA 0.47 4 36780934 36785487

Neighbor

gene id symbol gene type direction distance location
LOC110533103 tagl2 coding downstream 34244 36733716 ~ 36746690 (-)
LOC110533780 LOC106603359 coding downstream 69005 36704447 ~ 36711929 (-)
LOC110533101 LOC106603363 coding downstream 98031 36672252 ~ 36682903 (-)
scn4bb LOC106603364 coding downstream 115217 36652707 ~ 36665717 (-)
tmprss13b LOC106603367 coding downstream 145493 36618131 ~ 36635441 (-)
LOC110533786 LOC106603354 coding upstream 11242 36796729 ~ 36799658 (-)
LOC110533787 LOC106603353 coding upstream 16709 36802196 ~ 36806013 (-)
LOC110533789 LOC106603352 coding upstream 50932 36836419 ~ 36851211 (-)
LOC110533791 LOC106603351 coding upstream 69830 36855317 ~ 36876229 (-)
ucp2a ucp2a coding upstream 106464 36891951 ~ 36896174 (-)
G884398 NA non-coding downstream 1208 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 38891 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 47985 36732718 ~ 36732949 (-)
G884410 NA non-coding downstream 57393 36723296 ~ 36723541 (-)
G884409 NA non-coding downstream 58029 36722551 ~ 36722905 (-)
G884519 NA non-coding upstream 136679 36922166 ~ 36922366 (-)
G884542 NA non-coding upstream 211005 36996492 ~ 37038509 (-)
G884653 NA non-coding upstream 326664 37112151 ~ 37112932 (-)
sdhaf1 sdhaf1 non-coding upstream 334168 37119655 ~ 37123249 (-)
G884705 NA non-coding upstream 470400 37255887 ~ 37256086 (-)
G883754 NA other downstream 388407 36391103 ~ 36392527 (-)
G883753 NA other downstream 390020 36389997 ~ 36390914 (-)
G883128 NA other downstream 899983 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1181849 35598317 ~ 35599085 (-)
G884736 NA other upstream 531430 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 813146 37518096 ~ 37704039 (-)
G885767 NA other upstream 1453463 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2398211 39183698 ~ 39185578 (-)
G887329 NA other upstream 2431826 39217313 ~ 39217738 (-)

Expression


Co-expression Network