LOC110533787 (LOC106603353)


Basic Information

Item Value
gene id LOC110533787
gene name LOC106603353
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36802196 ~ 36806013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618304.2
TCACGCATGCGCACAGGACCTACTCCTTCTAACAGACTTGGCTGGAGAGGCTTGGGAATTCCCCAGGACATCTCCTTTCGCGAGACGACTTGACCTGTAAACAATTTAGCACGGTAACGTTAATATTTATTTTACTCCGTGAAAAACCATCAAAGATGAACTTTGATGATATCAGTTAGAGCTTAGATGCAGCGCCCTGTACTGTTTTCGTAGACTTGGTCCTCTAGCACCTTTAgcgtgctagctagctaactaactgctTGGACATCAGTTACCAGCTTGAAAGCACAGCTAGCCTGCTACATTGCTTTCGCAAACTGGTTACTAGAATCAATCGATTTTAACCAGCTGTTGCAAAATAGTCTTATAAAAAAcgaatagctagctagcaacagtaTTCGTGATGGCTGGTATTCAGCCCAGGTGCGATTTTGGAAAGCAGCATGCACGGCCTATGCTTGGCTTCGGGCTTGACAAACACGAAACTCTGGGTACTTCTGCACCGGATGATTGGTGCGACAGTGGGCTAGAATGTCTGAGTGGAACAGCGCTGAGCCTGGATGACTCCTTCAGCAATGAGACATCCAAAACCTGGGGGCCCAGGTCCCCTCCTCACACGGCCTCCTACCCCTCACTGGATGACACTGACAAGCACCCTATGGACTTTAGTTCACTGGGTGGTGGAGAGAGGTTGGACTCGGCTATAGGGGACTCAATTACAGATGAGACGGTGGGGAGTATATCACAGGGGCTGGGGACCATGCACCTGAATGAACCAGTTATCAGTTACACAGTCGACGACCGTGGGAGGCAAGCAGCACCGAGCCTGGAGGAGGAAAGACAAAGGAGAGACGAGATGCTCAACACACTGAACTTTGTGTCTGAGGATGGAGACACGGCTCTTCACTTGGCTCTTATCCACGAACACTGGGCCTTCGTACAATACTTACTGGGGGTGATCGCTCTGGACAGGAGCTGGGTGCCTTACCTGGACATCCAGAACCACTTGGGACAGACTGCCCTCCACCTGGCTGTCATAGTGGACCAGTCCCAGTGTGTGCGGGGGCTGCTGTGGGGCGGTGCGAGTGCTGAGctccaggagagaggagggaacacaCCACTGCACTTGGCTGTCAGGGAGCTGAGGCAGGACTGTGTACGAGAGATCACCTCCAACTGCCAGAACACCGACTATCTATACGTCACCAACTACTCGGGGGTGAGTGCACTGCATTTGGCAGTACAGAGGGGCAAGGAGGACATAATCAGCATGCTGATTGAGGCAGGAGCTGATGTTAACCAGAGGGACCCAGGCTCAGGCCGTTCCCCTCTCCATTGGGCCGTGGAGTCCCAGAGCCCcagggtggtgcagttgctgcTGCAGAGGGGAGCCAATGTAGACCAGCCCTCCTATGCAGGCCACACAGCCCTCTACTGCTCCCTGCACAGGCCCAACAAGGAGGTACAGGCCCTGCTCAAGGCTGGAGGGGCCTCTGACGCACAGGCCCAGGacgaagaggagagggagagtgaagagGAGTTTGATGACGTTGTTATCAATGGACAACGAGTGCACTAACCATGAACATGGAACCTGAGCCACATGGAGTCATGGCGCTGCTGTTGGGCTAAGCGATTGATGTGCAtcatgtgcatttgtgtgtgtgtggttcgtgtatgtatgtgtgcctgTAAATTGTATATAGCAAGGCTGCAGAGTAGGTAAAGTTCTCAACCCAGTCCGGACTTAAGTCATTCGATTTAATTGATCAGTTCCTGTGTCAATTTAGTTCCTTTACATTGTGCAGGGGGTAAGCTAATGTTAGTTGGGTCACATGGTTTTAGTGTTTGTCTGGAGCTTGCCAAGACTAGTGTTGCCTACCTTACGCATGGGAGAATGATCCAAACAAAAGCTGTGTTCTGTCAAACTATTTGCCAGTTTCACCACTACAGATTCCAACTTTAAAGCTGGAGTCCTTCATGTTGAAACTGCCACACCCGTTTGCGATATgacaacaaagaagttactgcaaacaatgAACTGTGTTTTTCTCTCGAACATGATTGGACGCGAGATAGAACAGCAGTGTATATAGTGCATTTATTTTTACCATGAGACCCAACGCTCCTCGGCTCTGcttcgtcaacaaaacaaaaacagccgTGGCGCAGTTTCCCCTACTGCGGATTCTATCTTTAAGGCTATAGATGAGAGATGTGGGTTTGGGACTAAAGCAGTTAGAAGGATCTGATATGTTACCATTATTAACAAGGCAGGGTTAGGGGAAGATGTGAATGTATATAAGGTAGAGAGAGGTTTATGCATGCCAAGGTAAGTAGTTAACAAGGGatgggaggagaaaagagaggggcaAACTCAACACATTGCTAAATCATCTTTGCCTCAAGTTGAAATAAATGATCGTTTAACGGCATTTGGGAACCTTTGCAAGTCTATATGAGTTGAGATTTTTTGACCTATCACATGGGTAGAGGGTAATGTGATGTGACAATTTCAATAATGAATCAGTTCCTGACTATGAGTGCTCTAACCAGGGCCTGACGACTATCCCTGGAATACCCTGGAGTGATGTCATTCAGTTCATTTGATGTATAGTTCACAAATTAAAGACAGAGCTACAAAAAGCAGACACGGAGACCCGCCAGAACAAGGGTTTAATCTGGTGTATATTCGCTTTCTGTATTTTTGACTTATTTTTGTATTCTTTTGAAAAAGGATTGACTGGTGATTTGACAGGCTAGGATGCCTCTGTATTTGCTCGTCAGCAGGAGCATGATGTCTACATGATTATTGTAATAAAAATGTATAGAGTATTGTTTATTTTCCCTGAACACTCATCAGTATGGATTCTGTATCAAAGTTGTAGCCAAGCTTTACTTCCATGCACAGCTTCGATACAGATACAGTTACAGCATCCGGGAGCCGAGGCTCCATaattatactgaataaaaatattaatgccaaa

Function

NR:

description
NF-kappa-B inhibitor alpha-like

GO: NA

KEGG:

id description
K02581 NFKBIB; NF-kappa-B inhibitor beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618304.2 True 2987 mRNA 0.48 6 36802196 36806013

Neighbor

gene id symbol gene type direction distance location
LOC110533786 LOC106603354 coding downstream 2538 36796729 ~ 36799658 (-)
LOC110533783 LOC106603358 coding downstream 16709 36780934 ~ 36785487 (-)
LOC110533103 tagl2 coding downstream 55506 36733716 ~ 36746690 (-)
LOC110533780 LOC106603359 coding downstream 90267 36704447 ~ 36711929 (-)
LOC110533101 LOC106603363 coding downstream 119293 36672252 ~ 36682903 (-)
LOC110533789 LOC106603352 coding upstream 30406 36836419 ~ 36851211 (-)
LOC110533791 LOC106603351 coding upstream 49304 36855317 ~ 36876229 (-)
ucp2a ucp2a coding upstream 85938 36891951 ~ 36896174 (-)
LOC110533793 LOC106603347 coding upstream 103131 36909144 ~ 36912477 (-)
LOC110533795 LOC106603346 coding upstream 149954 36955967 ~ 36956929 (-)
G884398 NA non-coding downstream 22470 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 60153 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 69247 36732718 ~ 36732949 (-)
G884410 NA non-coding downstream 78655 36723296 ~ 36723541 (-)
G884409 NA non-coding downstream 79291 36722551 ~ 36722905 (-)
G884519 NA non-coding upstream 116153 36922166 ~ 36922366 (-)
G884542 NA non-coding upstream 190479 36996492 ~ 37038509 (-)
G884653 NA non-coding upstream 306138 37112151 ~ 37112932 (-)
sdhaf1 sdhaf1 non-coding upstream 313642 37119655 ~ 37123249 (-)
G884705 NA non-coding upstream 449874 37255887 ~ 37256086 (-)
scn4bb LOC106603364 other downstream 136839 36652707 ~ 36665717 (-)
G883754 NA other downstream 409669 36391103 ~ 36392527 (-)
G883753 NA other downstream 411282 36389997 ~ 36390914 (-)
G883128 NA other downstream 921245 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1203111 35598317 ~ 35599085 (-)
G884736 NA other upstream 510904 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 792620 37518096 ~ 37704039 (-)
G885767 NA other upstream 1432937 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2377685 39183698 ~ 39185578 (-)
G887329 NA other upstream 2411300 39217313 ~ 39217738 (-)

Expression


Co-expression Network