LOC110533789 (LOC106603352)


Basic Information

Item Value
gene id LOC110533789
gene name LOC106603352
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36836419 ~ 36851211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618305.2
GGattgaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggtggCGGTAGAATCCCTCATTCCAATAGAACAGGAGGAGAGAATCGAGACGGCACAAGGGAGGCATTCTTGCAAGCACAAGTGAACCAGCGATCAGACTAGCAATCCTAGCACATTTACCAGATAAGGaaatagggagggaggagagagagaaagagaggggtctGAAGGGGGGAATGTGGCATGCTTACGTAGTTTGACAGAGATCGAGTGAGAGAGTGaaccagagagagtgagagagtgctgaaaggagagggaggaacaaGGAGCGAGACCTAGAGAGAGATAGGTAATCAGAGAGACTGAGCTCAGAACACAAAcataaggagaggggaaaggagggagcaaggagagagaaagagcaaagagagggagagaagagagagatgatggtTTTCCAGGAGGATAGCCACTCATCCTTGCTCTCTGCGGCAGACATGACTCCAGGCGGAGGACTCTGCTGGAATTAGCCAGAGGGACGATAGAGGACAGCAGGTCTGCAGCACCGCTGCCTAAGTGTATGCAGCAAGGCAGCTGATTGAGTGTGTGTGCCGGCGtttattttgtcttttttttttttaactgtttcTTGTAGTGATTGGGGGTGGAGGAGCCAACATTCCCATGACTATGAATTTCAGTAAGCAATACAGTGCATGGCAGGAGCTTTATGTGCAAATGTGTCTTTACATCATAGTGTAGTAAATATAGGGAGGATTCAGGCAGTGAAAGTCGGTCCTCGAgttttagcgtgtgtgtgtgtgtgtgtggctgtgcgtGGAGGTGTGCAGAGGAGAGGTCAGCTGGGTGCAGTGTGTAGTGTTCTGGGTTAGAAGAGGCAGGGTACAGGGAAAGTACTGAACACAATGCAAGGACAAGAGCTTCACACTCATGGGAGGGAGTGCATCTGAGGTACCAGGACAGCCCTGGGGGTAGGGTGgagcacagagcgagagagggcagGGAAGAGCGGGAGTgacggggagaaagagggggaggagggagagaaggagagagagagcaagatcaTGGCTGTCACATACAGTGAGCTATAGCATAGATCTGAGTGGTGCAGCAGGGGGAAGACAAGCTTCACTacacagggagggggagggagggagagaggaggagagaggaggagaggcagacggcACCACTCCTCTGCCAGGAAGAGAAGAGCACAACGGGACCAGACCGAGGGAGGGCACACACGTTCACCCCCACACAGTCACTCCCATAGAGAACCATCGGCCAGGTCAACGAGTAGAGGTCAGAAGAAGCTGGTGTGGGACGGGGGCGGATGCGCCCCCTCTGGCTGGGGACCGTCAGGAGCGCTGAGcccaggaggagggggaggaggagcgggaggaagagggggagagccCCGGAGACCCGGTTCCTCCTTAGGCTGAACCTGTCTTTCAATGACCATGGGGGAGTGGACCATTCTGGAGCGGCTGCTCGAGGCTGCTGTCCAGCAACATTCTACCATGATTGGGAGgaTCCTGCTGACTGTAGTAGTGATCTTCCGTATTTTGATAGTAGGTATAGTGGGTGAAAAAGTCTACGAGGACGAGCAGATAATGTTCATCTGCAACACTATGCAGCCGGGCTGCAACCAGGCCTGCTACGACAAGGCCTTCCCCATATCCCACATCCGCTTCTGGGTCTTCCAGATCATCTTGGTGTGTACGCCCAGTCTATGCTTCATCACCTACTCTGTGCACCAGTCCGCCAAGCAGCGTGACCGCAGTTACTCCATGCTGCACCCCTACATAGACCACGGTCATGCAAGTCACCACAGTCGCGGAGGCGACCACCACGCCCGCAAGCTGCGCAACATCAACGGTATCCTGGTGCAAAACCCCGACAGCggcaaggaggagcaggacctGGAGGTCAAGGAGATCCCAAATGTACCCCGGGGGCTCACGCAGGCCAAGAGCTCCAAGGTGCGGCGGCAGGAGGGCATCTCCCGCTTCTACGTCATCCAGGTGGTGTTTCGTAACGTGCTGGAGATCGGCTTCCTGGCAGGCCAGTACTTCCTGTATGGCTTCAACGTGCCAGGGATGTTTGAGTGTGACCGTTACCCCTGCGTGAAGGAGGTGGAGTGTTACGTGTCACGCCCCACAGAGAAGACGGTGTTCCTGATCTTCATGTTTGCGGTGAGCGGCATCTGTGTGCTGCTCAACCTGGCCGAGCTCAACCACCTGGGCTGGAGGAAGATCAAGACGGCCGTCAGGGGTGTTCAGGCCCGCAGGAAGTCCATCTGTGAGGTGCGTAAGAAGGACGTGTCGCATGTGTCCCAGGCTCCCAACCTGGGCAGGACCCAGTCCAGTGAGTCAGCCTATGTCTGACAGAGGCTCCTCCACATGGGGGACCTGGACCTCTGGACCGAGCACAGATTTCTCTGGGGAGGACGAACACTTAATCCAGCTCCCCCCACCCTGAGGGGCACTAACTTTACACTGCAACATTATTCAGGGGTGCAGAGGGACTTCACATAGCCATACCGGAGGATTATTGGAGAGAAGAGCTTTTTGGActctacaggagagagagaaagtaccTAAATGGCAGTTGAGGTACTAACTAAAGTTAGATTTAAACTGTTGGGAGTGTTGTGCCGTCCAAGAGAACACACTGGATAAAGAGGAGATGGAACTAATTACTGTAAGAATATGAATTAAGGGTAGTTCAAATTAAGAAATAAGTCTCACATAAATATATTATCTTTGCCTTTGTGAGAGGTCAAACATTGTCCCTTCATTTATTTAAGTATGTTTGCATATGCAAGAACGTATGTGTGAGCATgcatgcgcatgtgtgtgtgtgtgtgtgtgtgcgcaagagATAAGGCAGTGTGTATGTCCTTTGTTCTGCAGAGTCAGAGCAGAGACGATGGGTGAAGTTGAGTTGCTGAGGGAATGAAAACATTCCTTCTTTCCGTTATTTTCCTTCCCTGCGGCAGATCCACTATAAGGAGGAGCCAAGCAGAGGAGATGCACCTTTTATTATCCCCTTAGAAACCCAGAAAAGAAGGCTTTAAAATGTTTTCAAAAATCAACACCAAAACTATACCTCAGCACAAACTGGAACCCCTGTCCCCGTCCCCATCCCCGCCCTGTCCCCGTCCCCGCCCTGTCCCCGTCCCCGCCCTGTCCCCGTC

Function

NR:

description
gap junction delta-2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618305.2 True 3242 mRNA 0.53 2 36836419 36851211

Neighbor

gene id symbol gene type direction distance location
LOC110533787 LOC106603353 coding downstream 30406 36802196 ~ 36806013 (-)
LOC110533786 LOC106603354 coding downstream 36761 36796729 ~ 36799658 (-)
LOC110533783 LOC106603358 coding downstream 50932 36780934 ~ 36785487 (-)
LOC110533103 tagl2 coding downstream 89729 36733716 ~ 36746690 (-)
LOC110533780 LOC106603359 coding downstream 124490 36704447 ~ 36711929 (-)
LOC110533791 LOC106603351 coding upstream 4106 36855317 ~ 36876229 (-)
ucp2a ucp2a coding upstream 40740 36891951 ~ 36896174 (-)
LOC110533793 LOC106603347 coding upstream 57933 36909144 ~ 36912477 (-)
LOC110533795 LOC106603346 coding upstream 104756 36955967 ~ 36956929 (-)
LOC110533104 LOC106603410 coding upstream 119157 36970368 ~ 36973762 (-)
G884398 NA non-coding downstream 56693 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 94376 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 103470 36732718 ~ 36732949 (-)
G884410 NA non-coding downstream 112878 36723296 ~ 36723541 (-)
G884409 NA non-coding downstream 113514 36722551 ~ 36722905 (-)
G884519 NA non-coding upstream 70955 36922166 ~ 36922366 (-)
G884542 NA non-coding upstream 145281 36996492 ~ 37038509 (-)
G884653 NA non-coding upstream 260940 37112151 ~ 37112932 (-)
sdhaf1 sdhaf1 non-coding upstream 268444 37119655 ~ 37123249 (-)
G884705 NA non-coding upstream 404676 37255887 ~ 37256086 (-)
scn4bb LOC106603364 other downstream 171062 36652707 ~ 36665717 (-)
G883754 NA other downstream 443892 36391103 ~ 36392527 (-)
G883753 NA other downstream 445505 36389997 ~ 36390914 (-)
G883128 NA other downstream 955468 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1237334 35598317 ~ 35599085 (-)
G884736 NA other upstream 465706 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 747422 37518096 ~ 37704039 (-)
G885767 NA other upstream 1387739 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2332487 39183698 ~ 39185578 (-)
G887329 NA other upstream 2366102 39217313 ~ 39217738 (-)

Expression


Co-expression Network