LOC110533793 (LOC106603347)


Basic Information

Item Value
gene id LOC110533793
gene name LOC106603347
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36909144 ~ 36912477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618313.2
TGCAGTACCCTGAAACAGCAAGGCGCAAAACACAACAGGATTAAACAAATTGAGGATTAATTTTTATTTTTGCGGTCATAtattggattacattttttttaaacaaaattcCAAGAGTTTGTTGACGTTCACAGATAGTGGCATGCTGCTTTGCTGTCTCCAGGCAGATTTTATGGACCAAGGCATTTCATCAGGAAAACACCTCCAAGCAAGACATTTACCAGTGAAAGAGACTTGAAGATTCTCCTCATCAATATCGCTCACTGACAGAGTTGATCAGCAGGCTGATCCTTGTTGTTCTACTGTTGAACTGATTGTCTTGAACTCAAGCAACACATCTCCGGCACAGCTATGGTTGGAATAAAACCCACAGACCTGGCGCCAACTACGGCTGTCAAGTTTGTTGGTGCAGGCACAGCAGCCTGCATCGCTGACCTTGTGACCTTCCCCTTGGATACTGCCAAAGTCAGACTACAGATTCAAGGGGAGGCTCAGTTGGGGCATGGGGCCCAGGCTGTGAGGTATCGGGGCGTGTTTGGTACCATCACCACCATGGTGCGTACAGAGGGGGCCAGGAGCCTCTACAGCGGGCTGGTGGCAGGGCTCCAGAGGCAGATGAGCTTCGCCTCCGTCCGTATCGGCCTCTATGATTCCATGAAGCAGTTCTACACTCATGGCTCTGACAGTGCTAGCATTGTTACTCGGCTCATGGCAGGCTGCACCACCGGAGCAATGGCTGTGATGTTTGCTCAGCCCACAGACGTGGTCAAGGTGCGTTTCCAGGCTCAAGTACGTCTGGCTGACGGGGTGAAGAGATACAACGGTACTATGGACGCTTATCGGACCATCGCCCGAGATGAAGGGGTGCGGGGCCTTTGGAAAGGCTGCATGCCGAATATAACGCGCAATGCCATTGTGAATTGTTGCGAGCTGGTCACCTACGACATCATCAAGGAACTCATATTGAAGTACGACCTAATGACGGATAACCTTCCATGCCACTTCACGGCTGCGCTCGGTGCAGGGTTATGTACCACCATTGTCGCATCACCAGTAGATGTGGTTAAGACCAGATTCATGAATTCAACGTCAGGCCAGTACAGCAGCGCAATTAACTGTGCCTACACTATGCTGACTAAGGAGGGGCCAACAGCCTTCTACAAGGGGTTTGTGCCCTCCTTCCTGCGACTGGGGTCCTGGAACATTGTGATGTTTGTGTCTTATGAGCAGATCAAGAGGACTATGATGAGAACAAAGACTTCCTGGGAGTCACCATTCtgattttttgttatttttctaaTGTTTCTCTGGACTGAGCCTTGCAGGCAATGAAGGCTTCACCACAGCACTGTGGAAATCACGCCTGTTCTCCCCCATTGTTCCATGAAATGGATTTCTGGAGTGGACTTCTAACAGTGGTGACATATGTTCATTTTTAAAGCCAGAGAGTCAGATATGTAGGATTCACAGGAAGTatgtggcaccttaattggggaggacaggctcctggtaatggctggagaggaatggtatcaaatacatccaacatggtttccatgtgtttgatgcccttccatttgctccattcctgACATTATTATGCTCcgtcctcccatcagcagcctcctgtggtaggATTATCCACCACTATGCATGTTAAGGTGTAAGGCCCAAACGGGGCCCATGTAAAATGGACTGGTAGCAATTGGCCTGTGAAACAATGGCCACTTTTAGATAGTAGAGCTGAGCCATAGACCGTTCCTCTTATTCTCCCTCATTCTTTTTCTTTGACTGTGTAAAGAAATGTTTACAGTTTTGCGCTTATAATGAAGTTGTTTATATTTCTATGTATTATTTGTTTACATGTGGCGTTTTCTCATTAAGATGTGAAAGCTTGGTTTATCGCTGGTCGATATCTCATTATCAGGTCATGAATTATGTATATTCCAATGCAAATGCAATACATTTGGTTGACCTAAAACATAAATAAAGCTGCACTTTTCCCCCCAA
>XM_021618315.2
TAAAAGTGCAGTACCCTGAAACAGCAAGGCGCAAAACACAACAGGATTAAACAAATTGAGGATTAATTTTTATTTTTGCGGTCATAtattggattacattttttttaaacaaaattcCAAGAGGCAGATTTTATGGACCAAGGCATTTCATCAGGAAAACACCTCCAAGCAAGACATTTACCAGTGAAAGAGACTTGAAGATTCTCCTCATCAATATCGCTCACTGACAGAGTTGATCAGCAGGCTGATCCTTGTTGTTCTACTGTTGAACTGATTGTCTTGAACTCAAGCAACACATCTCCGGCACAGCTATGGTTGGAATAAAACCCACAGACCTGGCGCCAACTACGGCTGTCAAGTTTGTTGGTGCAGGCACAGCAGCCTGCATCGCTGACCTTGTGACCTTCCCCTTGGATACTGCCAAAGTCAGACTACAGATTCAAGGGGAGGCTCAGTTGGGGCATGGGGCCCAGGCTGTGAGGTATCGGGGCGTGTTTGGTACCATCACCACCATGGTGCGTACAGAGGGGGCCAGGAGCCTCTACAGCGGGCTGGTGGCAGGGCTCCAGAGGCAGATGAGCTTCGCCTCCGTCCGTATCGGCCTCTATGATTCCATGAAGCAGTTCTACACTCATGGCTCTGACAGTGCTAGCATTGTTACTCGGCTCATGGCAGGCTGCACCACCGGAGCAATGGCTGTGATGTTTGCTCAGCCCACAGACGTGGTCAAGGTGCGTTTCCAGGCTCAAGTACGTCTGGCTGACGGGGTGAAGAGATACAACGGTACTATGGACGCTTATCGGACCATCGCCCGAGATGAAGGGGTGCGGGGCCTTTGGAAAGGCTGCATGCCGAATATAACGCGCAATGCCATTGTGAATTGTTGCGAGCTGGTCACCTACGACATCATCAAGGAACTCATATTGAAGTACGACCTAATGACGGATAACCTTCCATGCCACTTCACGGCTGCGCTCGGTGCAGGGTTATGTACCACCATTGTCGCATCACCAGTAGATGTGGTTAAGACCAGATTCATGAATTCAACGTCAGGCCAGTACAGCAGCGCAATTAACTGTGCCTACACTATGCTGACTAAGGAGGGGCCAACAGCCTTCTACAAGGGGTTTGTGCCCTCCTTCCTGCGACTGGGGTCCTGGAACATTGTGATGTTTGTGTCTTATGAGCAGATCAAGAGGACTATGATGAGAACAAAGACTTCCTGGGAGTCACCATTCtgattttttgttatttttctaaTGTTTCTCTGGACTGAGCCTTGCAGGCAATGAAGGCTTCACCACAGCACTGTGGAAATCACGCCTGTTCTCCCCCATTGTTCCATGAAATGGATTTCTGGAGTGGACTTCTAACAGTGGTGACATATGTTCATTTTTAAAGCCAGAGAGTCAGATATGTAGGATTCACAGGAAGTatgtggcaccttaattggggaggacaggctcctggtaatggctggagaggaatggtatcaaatacatccaacatggtttccatgtgtttgatgcccttccatttgctccattcctgACATTATTATGCTCcgtcctcccatcagcagcctcctgtggtaggATTATCCACCACTATGCATGTTAAGGTGTAAGGCCCAAACGGGGCCCATGTAAAATGGACTGGTAGCAATTGGCCTGTGAAACAATGGCCACTTTTAGATAGTAGAGCTGAGCCATAGACCGTTCCTCTTATTCTCCCTCATTCTTTTTCTTTGACTGTGTAAAGAAATGTTTACAGTTTTGCGCTTATAATGAAGTTGTTTATATTTCTATGTATTATTTGTTTACATGTGGCGTTTTCTCATTAAGATGTGAAAGCTTGGTTTATCGCTGGTCGATATCTCATTATCAGGTCATGAATTATGTATATTCCAATGCAAATGCAATACATTTGGTTGACCTAAAACATAAATAAAGCTGCACTTTTCCCCCCAA
>XM_021618312.2
TTTGTAAAAGTGCAGTACCCTGAAACAGCAAGGCGCAAAACACAACAGGATTAAACAAATTGAGGATTAATTTTTATTTTTGCGGTCATAtattggattacattttttttaaacaaaattcCAAGAGATAGTGGCATGCTGCTTTGCTGTCTCCAGGCAGATTTTATGGACCAAGGCATTTCATCAGGAAAACACCTCCAAGCAAGACATTTACCAGTGAAAGAGACTTGAAGATTCTCCTCATCAATATCGCTCACTGACAGAGTTGATCAGCAGGCTGATCCTTGTTGTTCTACTGTTGAACTGATTGTCTTGAACTCAAGCAACACATCTCCGGCACAGCTATGGTTGGAATAAAACCCACAGACCTGGCGCCAACTACGGCTGTCAAGTTTGTTGGTGCAGGCACAGCAGCCTGCATCGCTGACCTTGTGACCTTCCCCTTGGATACTGCCAAAGTCAGACTACAGATTCAAGGGGAGGCTCAGTTGGGGCATGGGGCCCAGGCTGTGAGGTATCGGGGCGTGTTTGGTACCATCACCACCATGGTGCGTACAGAGGGGGCCAGGAGCCTCTACAGCGGGCTGGTGGCAGGGCTCCAGAGGCAGATGAGCTTCGCCTCCGTCCGTATCGGCCTCTATGATTCCATGAAGCAGTTCTACACTCATGGCTCTGACAGTGCTAGCATTGTTACTCGGCTCATGGCAGGCTGCACCACCGGAGCAATGGCTGTGATGTTTGCTCAGCCCACAGACGTGGTCAAGGTGCGTTTCCAGGCTCAAGTACGTCTGGCTGACGGGGTGAAGAGATACAACGGTACTATGGACGCTTATCGGACCATCGCCCGAGATGAAGGGGTGCGGGGCCTTTGGAAAGGCTGCATGCCGAATATAACGCGCAATGCCATTGTGAATTGTTGCGAGCTGGTCACCTACGACATCATCAAGGAACTCATATTGAAGTACGACCTAATGACGGATAACCTTCCATGCCACTTCACGGCTGCGCTCGGTGCAGGGTTATGTACCACCATTGTCGCATCACCAGTAGATGTGGTTAAGACCAGATTCATGAATTCAACGTCAGGCCAGTACAGCAGCGCAATTAACTGTGCCTACACTATGCTGACTAAGGAGGGGCCAACAGCCTTCTACAAGGGGTTTGTGCCCTCCTTCCTGCGACTGGGGTCCTGGAACATTGTGATGTTTGTGTCTTATGAGCAGATCAAGAGGACTATGATGAGAACAAAGACTTCCTGGGAGTCACCATTCtgattttttgttatttttctaaTGTTTCTCTGGACTGAGCCTTGCAGGCAATGAAGGCTTCACCACAGCACTGTGGAAATCACGCCTGTTCTCCCCCATTGTTCCATGAAATGGATTTCTGGAGTGGACTTCTAACAGTGGTGACATATGTTCATTTTTAAAGCCAGAGAGTCAGATATGTAGGATTCACAGGAAGTatgtggcaccttaattggggaggacaggctcctggtaatggctggagaggaatggtatcaaatacatccaacatggtttccatgtgtttgatgcccttccatttgctccattcctgACATTATTATGCTCcgtcctcccatcagcagcctcctgtggtaggATTATCCACCACTATGCATGTTAAGGTGTAAGGCCCAAACGGGGCCCATGTAAAATGGACTGGTAGCAATTGGCCTGTGAAACAATGGCCACTTTTAGATAGTAGAGCTGAGCCATAGACCGTTCCTCTTATTCTCCCTCATTCTTTTTCTTTGACTGTGTAAAGAAATGTTTACAGTTTTGCGCTTATAATGAAGTTGTTTATATTTCTATGTATTATTTGTTTACATGTGGCGTTTTCTCATTAAGATGTGAAAGCTTGGTTTATCGCTGGTCGATATCTCATTATCAGGTCATGAATTATGTATATTCCAATGCAAATGCAATACATTTGGTTGACCTAAAACATAAATAAAGCTGCACTTTTCCCCCCAA

Function

NR:

description
mitochondrial uncoupling protein 2-like

GO:

id name namespace
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15103 UCP2_3, SLC25A8_9; solute carrier family 25 (mitochondrial uncoupling protein), member 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618313.2 False 2010 mRNA 0.47 8 36909144 36912467
XM_021618315.2 False 1970 mRNA 0.47 8 36909144 36912473
XM_021618312.2 True 2003 mRNA 0.47 8 36909144 36912477

Neighbor

gene id symbol gene type direction distance location
ucp2a ucp2a coding downstream 12970 36891951 ~ 36896174 (-)
LOC110533791 LOC106603351 coding downstream 32915 36855317 ~ 36876229 (-)
LOC110533789 LOC106603352 coding downstream 57933 36836419 ~ 36851211 (-)
LOC110533787 LOC106603353 coding downstream 103131 36802196 ~ 36806013 (-)
LOC110533786 LOC106603354 coding downstream 109486 36796729 ~ 36799658 (-)
LOC110533795 LOC106603346 coding upstream 43490 36955967 ~ 36956929 (-)
LOC110533104 LOC106603410 coding upstream 57891 36970368 ~ 36973762 (-)
LOC110533798 LOC106603343 coding upstream 166451 37078928 ~ 37089372 (-)
rtn2b rtn2 coding upstream 177090 37089567 ~ 37099554 (-)
LOC110533799 LOC106603238 coding upstream 200653 37113130 ~ 37117261 (-)
G884398 NA non-coding downstream 129418 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 167101 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 176195 36732718 ~ 36732949 (-)
G884410 NA non-coding downstream 185603 36723296 ~ 36723541 (-)
G884409 NA non-coding downstream 186239 36722551 ~ 36722905 (-)
G884519 NA non-coding upstream 9689 36922166 ~ 36922366 (-)
G884542 NA non-coding upstream 84015 36996492 ~ 37038509 (-)
G884653 NA non-coding upstream 199674 37112151 ~ 37112932 (-)
sdhaf1 sdhaf1 non-coding upstream 207178 37119655 ~ 37123249 (-)
G884705 NA non-coding upstream 343410 37255887 ~ 37256086 (-)
scn4bb LOC106603364 other downstream 243787 36652707 ~ 36665717 (-)
G883754 NA other downstream 516617 36391103 ~ 36392527 (-)
G883753 NA other downstream 518230 36389997 ~ 36390914 (-)
G883128 NA other downstream 1028193 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1310059 35598317 ~ 35599085 (-)
G884736 NA other upstream 404440 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 686156 37518096 ~ 37704039 (-)
G885767 NA other upstream 1326473 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2271221 39183698 ~ 39185578 (-)
G887329 NA other upstream 2304836 39217313 ~ 39217738 (-)

Expression


Co-expression Network