LOC110533795 (LOC106603346)



Basic Information


Item Value
gene id LOC110533795
gene name LOC106603346
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36955967 ~ 36956929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021618317.2
ATGGCAGTAACCAATGAAACCTTTCAGGAGACTTCTTTTATATATGAACAGATGATCATATTTGAGATGAATGAGAGGAATATGGTTAAAGTGGCAGTGGCAATCCTGATGGCTGTATGTTTTATCTACATAAATTGCGTGATGATTGTTGCTATGAGTAGCAGAATTACTTTTATGAAAATTCCCCGCTACATTCTCTTCACACATTTGCTATTAAATGACTCCATGCAGTTGCTGGTCAGCTGCCTTATGTATGTGTTTGCCTTGGTTTATCTACGATTGGTAAAGGTTGTCTGTGGACTGTTTGTCATGTTTGGCAGTGGCATGTCCCGTGTTGCCCCACTTAACCTGGCGTTGATGTCTCTAGAACGCTATGCAGCCATCTGCCTCCCTCTACGGCATAGTGACATAGCCACACCCAAAAGATCTGGCATTGCCATTGCTGTCATCTGGCTTGTCATATTCATAAATCTTATAATTGATATGCTTTATTCTACAGTAAAAGATCCCGGCTTTTTTGTTACCCCGATATTTTGCACACGGCAGAATTTATTCATTGCGTTGTGGCAGATGCAAGTGTTTCAGGGGTTCAATGCTTTTTGCTTTGTAGCTGTATCTCTCATCATCATTTACACATACATTGCCATAATTGTCACAGCCAGGTCTGCCTCTGACAAAACGAAAGCCAGTAAGGCCCACAAGACAGTGCTGCTGCACCTGGTTCAGCTGGGCCTGTCGCTCTCATCTTTTCTGTACACACCCATAGAAAGTGCACTGGCCAGTGTAGGCAGTACTACCATCTTTATTGACCTGCGATACTTAaacttcctcttcctcatcatccTGCCAAGATGTCTGAGCCCACTCATCTACGGGCTGAGGGATGATGCCGTACGACCCCTGTTCCTACACTACTTAACTTGCAGAACTAGAAAGGTCAAGGCTGCTGTGATGGTACAATAG

Function


NR:

description
olfactory receptor 2M3-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021618317.2 True 963 mRNA 0.44 1 36955967 36956929

Neighbor


gene id symbol gene type direction distance location
LOC110533793 LOC106603347 coding downstream 43490 36909144 ~ 36912477 (-)
ucp2a ucp2a coding downstream 59793 36891951 ~ 36896174 (-)
LOC110533791 LOC106603351 coding downstream 79738 36855317 ~ 36876229 (-)
LOC110533789 LOC106603352 coding downstream 104756 36836419 ~ 36851211 (-)
LOC110533787 LOC106603353 coding downstream 149954 36802196 ~ 36806013 (-)
LOC110533104 LOC106603410 coding upstream 13439 36970368 ~ 36973762 (-)
LOC110533798 LOC106603343 coding upstream 121999 37078928 ~ 37089372 (-)
rtn2b rtn2 coding upstream 132638 37089567 ~ 37099554 (-)
LOC110533799 LOC106603238 coding upstream 156201 37113130 ~ 37117261 (-)
sdhaf1 sdhaf1 coding upstream 164277 37119655 ~ 37123249 (-)
G884519 NA non-coding downstream 33601 36922166 ~ 36922366 (-)
G884398 NA non-coding downstream 176241 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 213924 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 223018 36732718 ~ 36732949 (-)
G884410 NA non-coding downstream 232426 36723296 ~ 36723541 (-)
G884542 NA non-coding upstream 39563 36996492 ~ 37038509 (-)
G884653 NA non-coding upstream 155222 37112151 ~ 37112932 (-)
G884705 NA non-coding upstream 298958 37255887 ~ 37256086 (-)
G884719 NA non-coding upstream 336343 37293272 ~ 37293563 (-)
scn4bb LOC106603364 other downstream 290610 36652707 ~ 36665717 (-)
G883754 NA other downstream 563440 36391103 ~ 36392527 (-)
G883753 NA other downstream 565053 36389997 ~ 36390914 (-)
G883128 NA other downstream 1075016 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1356882 35598317 ~ 35599085 (-)
G884736 NA other upstream 359988 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 641704 37518096 ~ 37704039 (-)
G885767 NA other upstream 1282021 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2226769 39183698 ~ 39185578 (-)
G887329 NA other upstream 2260384 39217313 ~ 39217738 (-)

Expression



Co-expression Network