LOC110533798 (LOC106603343)


Basic Information

Item Value
gene id LOC110533798
gene name LOC106603343
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37078928 ~ 37089372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618320.2
AGCGACAAAGCCTACAGTCCATGAAGCGTGCCCGTCTTCTACAAATATTTTTACGTAGCTAGAACGTCGCCATGTTGTCATCACGTACGTCTGTCTTGGATGGCAAAACAATTTATGTGGATGAATCCTTCTGATTAAACGGGATTTGTGGCAATTTTTGAAACGCCAATAAGTTATTTATTGACATTTCAGCACTCGAAGACCTTGAATCCATCAATGGAAATGACAGAAACATATGATTTCCTTTTTAAATTCTTGGTGATTGGAAGTGCGGGATCAGGGAAATCCTGTCTTCTCCATCAATTTATAGAAAACAAGTTCAAGCAGGACTCCAGCCACACCATCGGGGTGGAGTTTGGCTCCCGGGTGGTAATGGTTGCTGGCAAGACAGTCAAGTTGCAGATCTGGGACACAGCTGGACAGGAGCGATTCCGATCAGTGACTCGCAGTTATTACAGAGGGGCAGCAGGGGCTCTCCTGGTTTATGACATCACCAGTCGGGAAACGTACAATTCCCTGACCAACTGGTTGACAGACGCTCGGACACTGGCCAGTCCAAACATCGTCATTATCCTCTGTGGGAACAAGAAGGACCTAGAAGCTGACAGAGAGGTCACTTTCCTTGAGGCATCCCGTTTTGCCCAGGAGAATGAAGTGATGTTCCTGGAGACGAGCGCCCTCACCGGAGAAAACGTGGAGGAGGCCTTCCTCAAATGTGGTCGCACCATCATCAACAAGATAGAGTCAGgtgagttagacccAGAGCGAATGGGCTCAGGGATCCAGTATGGTGACACGACGGTGAGGCAGCTTCGCCAGTCGCCACAggctggctcagaacagggcagagaTCAGTGCAACTGTTAAAGGCTAATGCTAACCCAGCTCTAAGACACACAAATCCCATGTCTCCAGGCTTTTAGAGGACTGCCCTGTGACTTTTGACCCCTGCTCCTGGAAAATTGCTGGAGAGACCCTGTGTGGAACTTAAGGCTGGGTTAGCATCTTGATCAGGAACTGTGATGTGAGTATCTGGGTCCAGTCATTGAGCTTCTCCaggcctgtctctctctgactactgCTCCGCTGTGCATCGCCAGGGACTACAAGTGACATCAGCAGAGAGACCTGACCAATCAGAGCCAGGCCCATGGACACACATCAGGATGTTTGTTTTCAATGTCTTTATTCAGAAGCAACAGCCACAGCAGCTCATACACCTCTCACTGTTCACTCTATTGATATAAAGCTAGTGAAAGTCAGGTCAAAGCTTGTAGACAGTGATGGGACTGACATGGTGTAAAGAGAACACAACACCAGACTTTTATTTATGTTCGATCTCTATAAAAGTTTAGCCTATTTATTGGTTGTGTTGAAAAATGTTGTGAATATATCAAAAGGAAATAACATTTGTGACATTGGTGTACAATGTTTTATGAAACTGTAAAAAGCAGGGAACTTCTATGGTAGTCACAgtgtatacatacagtactgtGTGAGTACAATTTTGACAACGttaatacacatatatacatacacacacacacacaaagtatgtGGACCCCCTCAAATTAGTAGATTCAGCTATTTCAGACACAGGTGTATAAagtcgagcacaccgccatgcaatctccatagacaaacattatcaagagaatggccttactgaagagctcagtgactttcaacgtgacaccatcataggatgccacctttccaacaagtcagttcatcatatttctgccctgctagagctgccccggtcatttgtaagtactgttattgtgaagtggcaaCAATTGCTCAGCCGCGAAGttttaggccacacaagctcacagaatgggaccaccaaGTGTTGAAGTGcgtaaaaataatatttttgcaacactcactacctagttccaaactgcctctggaagcaacgtcagcacaaaaactgtttgtcgggagcttcatgaagtggATTTCCATAGCCGTGCagccacacaagcctaagatcacaatgccaggcgtcggctggagtggtgtaaagctcgctgctgttggactctggagcagtggaaacgcgttctctggagtgatgaaccacacttcaccatctggcagtctgacaaacaaatctgggtttggcagatgccaggagaatgctaactgccccaatgcatagtaccaactgtaaagttgtttcagcatgacaatggcaccaagcgaggtccatacagaaatgttttgttgagatcgcagtggaagaacttgactgacttgcacagagccctgacctcaaccccatcgaacaacttTGGGATGTTTTGGAACGCCaactgagccaggcctaatcgcccaacatcagtgcccgacctcactaatgctcttgtggctgaatggaagcaagtccccacagcaatgtctCAACATCAATGGAAAGCAttccctgaagagtggaggctattatagcagcaaaggggggaccaactccatattaatgcccatgattttggaatgagatgtttgacgagcaggtgtccacatacttttgtttagGAGTTGGAGGCAAGCCCAACAGtcgtttgtatgtatgtatgtatgtatgtatgaatgaatgaatgaatgaatgaatgaagacAGTGTGCATTGGATCTGGATGACTCATAAACGTCAGGTTAGGGGGAaaacaaatatgtattttacatgtgAGGTATTGTGCAATGATTATGAAAGGGTTGAGGCCATATCTAAATCCACTCAAACCAGATTGTCATTGATGGACCGAAGTAAAGTACAAACATGAGTATCTCCATTTTTAAAGTTGTTTGTGTGATTGGTTTTAGTAGATGCATATATCTGGACTATGATCTTACATGTGACGTTTGTGTGCTAGATAATTATTGAACTGAAGCACTGCCATTCCTTGCAAAGCCTGTATGATCTTAaattaataaataattaaaccaaatgaA
>XR_002475042.2
AGCGACAAAGCCTACAGTCCATGAAGCGTGCCCGTCTTCTACAAATATTTTTACGTAGCTAGAACGTCGCCATGTTGTCATCACGTACGTCTGTCTTGGATGGCAAAACAATTTATGTGGATGAATCCTTCTGATTAAACGGGATTTGTGGCAATTTTTGAAACGCCAATAAGTTATTTATTGACATTTCAGCACTCGAAGACCTTGAATCCATCAATGGAAATGACAGAAACATATGATTTCCTTTTTAAATTCTTGGTGATTGGAAGTGCGGGATCAGGGAAATCCTGTCTTCTCCATCAATTTATAGAAAACAAGTTCAAGCAGGACTCCAGCCACACCATCGGGGTGGAGTTTGGCTCCCGGGTGGTAATGGTTGCTGGCAAGACAGTCAAGTTGCAGATCTGGGACACAGCTGGACAGGAGCGATTCCGATCAGTGACTCGCAGTTATTACAGAGGGGCAGCAGGGGCTCTCCTGGTTTATGACATCACCAGTCGGGAAACGTACAATTCCCTGACCAACTGGTTGACAGACGCTCGGACACTGGCCAGTCCAAACATCGTCATTATCCTCTGTGGGAACAAGAAGGACCTAGAAGCTGACAGAGAGGTCACTTTCCTTGAGGCATCCCGTTTTGCCCAGGAGAATGAAGTGATGTTCCTGGAGACGAGCGCCCTCACCGGAGAAAACGTGGAGGAGGCCTTCCTCAAATGTGGTCGCACCATCATCAACAAGATAGAGTCAGgtgagttagacccAGAGCGAATGGGCTCAGGGATCCAGTATGGTGACACGACGGTGAGGCAGCTTCGCCAGTCGCCACAggctggctcagaacagggcagagaTCAGTGCAACTGTTAAAGGCTAATGCTAACCCAGCTCTAAGACACACAAATCCCATGTCTCCAGGCTTTTAGAGGACTGCCCTGTGACTTTTGACCCCTGCTCCTGGAAAATTGCTGGAGAGACCCTGTGTGGAACTTAAGGCTGGGTTAGCATCTTGATCAGGAACTGTGATGGACTACAAGTGACATCAGCAGAGAGACCTGACCAATCAGAGCCAGGCCCATGGACACACATCAGGATGTTTGTTTTCAATGTCTTTATTCAGAAGCAACAGCCACAGCAGCTCATACACCTCTCACTGTTCACTCTATTGATATAAAGCTAGTGAAAGTCAGGTCAAAGCTTGTAGACAGTGATGGGACTGACATGGTGTAAAGAGAACACAACACCAGACTTTTATTTATGTTCGATCTCTATAAAAGTTTAGCCTATTTATTGGTTGTGTTGAAAAATGTTGTGAATATATCAAAAGGAAATAACATTTGTGACATTGGTGTACAATGTTTTATGAAACTGTAAAAAGCAGGGAACTTCTATGGTAGTCACAgtgtatacatacagtactgtGTGAGTACAATTTTGACAACGttaatacacatatatacatacacacacacacacaaagtatgtGGACCCCCTCAAATTAGTAGATTCAGCTATTTCAGACACAGGTGTATAAagtcgagcacaccgccatgcaatctccatagacaaacattatcaagagaatggccttactgaagagctcagtgactttcaacgtgacaccatcataggatgccacctttccaacaagtcagttcatcatatttctgccctgctagagctgccccggtcatttgtaagtactgttattgtgaagtggcaaCAATTGCTCAGCCGCGAAGttttaggccacacaagctcacagaatgggaccaccaaGTGTTGAAGTGcgtaaaaataatatttttgcaacactcactacctagttccaaactgcctctggaagcaacgtcagcacaaaaactgtttgtcgggagcttcatgaagtggATTTCCATAGCCGTGCagccacacaagcctaagatcacaatgccaggcgtcggctggagtggtgtaaagctcgctgctgttggactctggagcagtggaaacgcgttctctggagtgatgaaccacacttcaccatctggcagtctgacaaacaaatctgggtttggcagatgccaggagaatgctaactgccccaatgcatagtaccaactgtaaagttgtttcagcatgacaatggcaccaagcgaggtccatacagaaatgttttgttgagatcgcagtggaagaacttgactgacttgcacagagccctgacctcaaccccatcgaacaacttTGGGATGTTTTGGAACGCCaactgagccaggcctaatcgcccaacatcagtgcccgacctcactaatgctcttgtggctgaatggaagcaagtccccacagcaatgtctCAACATCAATGGAAAGCAttccctgaagagtggaggctattatagcagcaaaggggggaccaactccatattaatgcccatgattttggaatgagatgtttgacgagcaggtgtccacatacttttgtttagGAGTTGGAGGCAAGCCCAACAGtcgtttgtatgtatgtatgtatgtatgtatgaatgaatgaatgaatgaatgaatgaagacAGTGTGCATTGGATCTGGATGACTCATAAACGTCAGGTTAGGGGGAaaacaaatatgtattttacatgtgAGGTATTGTGCAATGATTATGAAAGGGTTGAGGCCATATCTAAATCCACTCAAACCAGATTGTCATTGATGGACCGAAGTAAAGTACAAACATGAGTATCTCCATTTTTAAAGTTGTTTGTGTGATTGGTTTTAGTAGATGCATATATCTGGACTATGATCTTACATGTGACGTTTGTGTGCTAGATAATTATTGAACTGAAGCACTGCCATTCCTTGCAAAGCCTGTATGATCTTAaattaataaataattaaaccaaatgaA

Function

NR:

description
ras-related protein Rab-4B-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07880 RAB4B; Ras-related protein Rab-4B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618320.2 False 2957 mRNA 0.45 8 37078928 37089372
XR_002475042.2 True 2881 mRNA 0.44 9 37078928 37089372

Neighbor

gene id symbol gene type direction distance location
LOC110533104 LOC106603410 coding downstream 105166 36970368 ~ 36973762 (-)
LOC110533795 LOC106603346 coding downstream 121999 36955967 ~ 36956929 (-)
LOC110533793 LOC106603347 coding downstream 166451 36909144 ~ 36912477 (-)
ucp2a ucp2a coding downstream 182754 36891951 ~ 36896174 (-)
LOC110533791 LOC106603351 coding downstream 202699 36855317 ~ 36876229 (-)
rtn2b rtn2 coding upstream 195 37089567 ~ 37099554 (-)
LOC110533799 LOC106603238 coding upstream 23758 37113130 ~ 37117261 (-)
sdhaf1 sdhaf1 coding upstream 31834 37119655 ~ 37123249 (-)
qpctlb LOC106567815 coding upstream 38263 37127635 ~ 37134997 (-)
LOC110533803 LOC106603339 coding upstream 53534 37142906 ~ 37151223 (-)
G884542 NA non-coding downstream 40419 36996492 ~ 37038509 (-)
G884519 NA non-coding downstream 156562 36922166 ~ 36922366 (-)
G884398 NA non-coding downstream 299202 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 336885 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 345979 36732718 ~ 36732949 (-)
G884653 NA non-coding upstream 22779 37112151 ~ 37112932 (-)
G884705 NA non-coding upstream 166515 37255887 ~ 37256086 (-)
G884719 NA non-coding upstream 203900 37293272 ~ 37293563 (-)
G884725 NA non-coding upstream 211400 37300772 ~ 37301123 (-)
scn4bb LOC106603364 other downstream 413571 36652707 ~ 36665717 (-)
G883754 NA other downstream 686401 36391103 ~ 36392527 (-)
G883753 NA other downstream 688014 36389997 ~ 36390914 (-)
G883128 NA other downstream 1197977 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1479843 35598317 ~ 35599085 (-)
G884736 NA other upstream 227545 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 509261 37518096 ~ 37704039 (-)
G885767 NA other upstream 1149578 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2094326 39183698 ~ 39185578 (-)
G887329 NA other upstream 2127941 39217313 ~ 39217738 (-)

Expression


Co-expression Network