rtn2b (rtn2)


Basic Information

Item Value
gene id rtn2b
gene name rtn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37089567 ~ 37099554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990196.1
ATAAAAGTAGGCCAGCCGGGCCCTGTACTGCTGACAGGGATGGTAAGGACAAAAAAAGATCCTAGCGAGGGCCATAGGAGTGCAGGGGGTCTAGGAGATTAGTGAGCAGCAGAGTAAGCTAGTGGGGTGGTTTGCAGAGTGATCCGCTGCCGAAATGGCCACCAAAGtagTGGATCTGATCTACTGGCGGGATGTGGGGAAGACGGGGCTGGTGTTCACAGGGCTGGTGATAGGCCTGGCCAGCCTGTTCCAGCTCAGTGCCATCACCGTGCTGTCCTACCTGTGTATGGCCATCATGTGTCTCACCTTCCCCCTACGCCTCTACTACAAACTCCTAGAGCTGATACGTAAGAACCCTGAAGGAGTGCACCCCTTCCAGTCTTATATAGGAGACGACAGCTCTCTGACAGATGAGGAGACggtgttggtggtggaggaagTGGTGCTGATGATTGCCTTCGCCGTCACAGAGATCAAACGCCTGCTCTTCATCGGCAGCATCATGGACTCCATCAAGTTTGTGTTGCTGCTGTGCGTGTTGGTCTATGTGGGCATCACGACCAACGGACTGACCCTGGTGATAGTTGGTGTCATCTgtgttttctctcttcctctattctaCAAACAAATGCAGGGTCGGATGAAGAGGATTGGCAAAGTGGTCAACGGCctcctgaggaaaatcaaaagcTTGTTTAAGAGGTTGTGCAGTACACTGAGATCCTCTACTGCGGCTAAACCTGCTCCAACCACTACCCTGACCCCGGTGCCAGCCCTGGCCCCAAAACACAAACAAAAGTCAAAGTGATAAGAAACAGAAAGGGGGATCTATGGGAAAAGAGGGGGGTCATTCATACGTCTTATCAGACCACCTGGGATTAGGGGCTGGGAAACTCTGACAAGGGGGAGGGGTACAAGGACCTCATGGGGTGTGACGGGAGGGGGTACCAGGACCTCATGGGGTGTGACAGGAGGGGGTACAAGGATCTCATGGGGTGTGACGGGAGGGGGTACCAGGACCTCATGGGGTGTGACGGGAGGGGGTACAAGGACCTCATGGGGTGTGACGGGAGGGGGTACAAGGACCTCTTGGGGGTGTGACGGGAGGGGGTACAAGGACCTCATGGGGGTGTGACAGGAGGGGGTACAAGGACCTCATGGGAGTGTGAGTGTTCTTTGGAAGGCTACTGGTGTTTTATATTTCCATTTTCCCATTGTGGTGTCTGTGAATGGGAACATGATTTCAAATCCAGTGTTTGGTGTTGGTACACTAAAGACGTTTACAGACAAATGCAATGTTTATATGGGAGGGAATTTTCAGTCAAATCTAAAAGACAACTAGttcaccttggggggggggggggtatataccACAGAACACTGGCCATCTGACCACATGCCTTATAATTTACTTTGGAAGTGCACTCAAAGCGTAAGAATGGGTGAATGGGTGCATATTCAATGATTGGAGCTTACTCAAAAGTGTCATTAAACTGCATTATTCCCTTTTTCTTGATTTTTGCTTAAATTGTTGAATAAATGTTGAGTACATGTTTGAACCTTT

Function

symbol description
rtn2 Involved in negative regulation of amyloid-beta formation. Located in endoplasmic reticulum. Implicated in hereditary spastic paraplegia 12.

NR:

description
PREDICTED: reticulon-2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990196.1 True 1564 mRNA 0.51 7 37089567 37099554

Neighbor

gene id symbol gene type direction distance location
LOC110533798 LOC106603343 coding downstream 195 37078928 ~ 37089372 (-)
LOC110533104 LOC106603410 coding downstream 115805 36970368 ~ 36973762 (-)
LOC110533795 LOC106603346 coding downstream 132638 36955967 ~ 36956929 (-)
LOC110533793 LOC106603347 coding downstream 177090 36909144 ~ 36912477 (-)
ucp2a ucp2a coding downstream 193393 36891951 ~ 36896174 (-)
LOC110533799 LOC106603238 coding upstream 13576 37113130 ~ 37117261 (-)
sdhaf1 sdhaf1 coding upstream 21652 37119655 ~ 37123249 (-)
qpctlb LOC106567815 coding upstream 28081 37127635 ~ 37134997 (-)
LOC110533803 LOC106603339 coding upstream 43352 37142906 ~ 37151223 (-)
itpkca LOC106603337 coding upstream 58108 37157662 ~ 37176800 (-)
G884542 NA non-coding downstream 51058 36996492 ~ 37038509 (-)
G884519 NA non-coding downstream 167201 36922166 ~ 36922366 (-)
G884398 NA non-coding downstream 309841 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 347524 36740710 ~ 36742043 (-)
G884417 NA non-coding downstream 356618 36732718 ~ 36732949 (-)
G884653 NA non-coding upstream 12597 37112151 ~ 37112932 (-)
G884705 NA non-coding upstream 156333 37255887 ~ 37256086 (-)
G884719 NA non-coding upstream 193718 37293272 ~ 37293563 (-)
G884725 NA non-coding upstream 201218 37300772 ~ 37301123 (-)
scn4bb LOC106603364 other downstream 424210 36652707 ~ 36665717 (-)
G883754 NA other downstream 697040 36391103 ~ 36392527 (-)
G883753 NA other downstream 698653 36389997 ~ 36390914 (-)
G883128 NA other downstream 1208616 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1490482 35598317 ~ 35599085 (-)
G884736 NA other upstream 217363 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 499079 37518096 ~ 37704039 (-)
G885767 NA other upstream 1139396 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2084144 39183698 ~ 39185578 (-)
G887329 NA other upstream 2117759 39217313 ~ 39217738 (-)

Expression


Co-expression Network