ppm1nb (ppm1n)


Basic Information

Item Value
gene id ppm1nb
gene name ppm1n
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37100645 ~ 37112941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618322.2
ATAATCCAGACTCATCAAAGGTCGAGATTAGCAGAGAGCTGGATGGGGAGGGATGGAAAACAGAGGCACAGATAGGAagacaaggagggagggagaagtgaCAGCGCATGCATGACAGGGATGAGCTATGCTGTCAGGGATTGGTCTACataaatagccaaccaatcacaGATGAGGCAAACAGAAAGACTAGGGGACAGCTGGAGAAAGAGGGAAGTGCtatgaaaaagagagggagaaggtgaaATCACAGGACTACAGAGAAAAGCTAACAAACACAGAGCAGGGATGAATACAGGAGAGAGTGCAGATCAGTGAGATCTCcagagagaacaggaagagagaagagaggactgaAAGGAAGGAtatgggcagagagaggggtgtaAACAGCAAGCAGCAGCACAGAGAAAATCAATCAGCCAGACCAATAGCATCCGCCTGGGAAGCCATGCTCTGAAAGGCTTGGAGAAGCGGGGCTACGCAGGCAGCACACGGCACGGCACAGGCCTAGCCAACAGCCCACTGGCCCACAGGCCCACAGGCCCACAGcgggggggagagggaaagaagacACCCAGAACCACACTGTCAGCTGCTGTAGCCATGAGGACAACACGGAAGGGGAGTGTGGAGATGCCTGCATTTGTCCGGCAGCTggtgaaggagacagagaagagggtcAGCTCCTTCTTCAAGGGAGGGGGGCGTGGAGGGGCAGAGCACatgcagggggaggaggaggagatgatccCCAGCCCCTACCTAGACCGTCCCGTCCTGGACAAGCTGACTGAGGAGGGCTGCTCCCGCTGGGGCCTGACCTACGCCCTGGGCAGCATGCAGGGCTGGAGGGCCAACATGGAGGACTACCACAACTGTGTGCCTCAGCTGGGCGCAGGGCTGGCAGACTGGAGCTTCTTTGCTGTGTTTGATGGGCATGCGGGCAACCAAGTGGCACAGTACGCCTCACAACACCTGCTGGATCAGGTCCTAGCTACAGGAGGGATCGGGCCAGAGGACCACCCTGATCGGGTGAGAGGGAGCTTCACAGATGGCTtcctacacacagacaaacacctgCTAACTGCAGCCCGCCGTGAGGGCTGGGAGCGGGGTGGCACCACCGTGACCTCCACTCTCATCTCACCACGATACTTCTACTTCGCCAACTGTGGAGACTCGCGTGCCATGCTGTGCCGGGCAGGGCAAGTGTGCTTCTCCACTGAGGATCACAAGCCCTACAGCCCTCTGGAGAGGGAGCGCATTGAGAGCGCCGGTGGCTCCGTGTCCCTGCAGCGCATCAACGGCTCCTTGGCCGTGTCCCGAGCCCTGGGGGACTTCAGCTACAAGGGGGCAGAGAACCGGCCGCCCACCCAGCAGATGGTGTCTCCGGAGCCAGAGGTGTGTGTGGTGGAGCGGTCGCCCGGGGATGAGTTCCTGGTGCTGGCCTGTGACGGGGTGTGGGACACGGTCTCCAACGAGGAGCTGTGTGCTTTCATCCGCAGCCGTCTGCGCGTCTGCACTGACCTCAGGGACGTCTGCTCCCAGGTCATTGACCTCTGCCTCTATAAGGGCAGTCTGGACAACATCAGCATAATCTTGGTCTGCTTCCCTGGCTCCCCCCAGCTCTCAGCAGAGGCCCTACACCAGGAGGCAGCGCTTGAAGATCTGCTGGAGTCTAAAGTGGCAGAGATTTATGAGGAGCTGAGTTCCCAGGGGGAGGATCCTGACCTGCTGTCTGTCCTCACTGTTCTGGCAAACACTGATGTCCCAGGTTTACCACCTGGAGGCGGTCTGCAGAGCAAAAGGAACTGTATCATCTCTGCCTATTACGAAAAGAAAGAGGCACACAAACCTACTACACCTAATGGGCTTGGTGTTTCTGAGAAGCTCGTCTAGGCTCTGTTGTCTGGGAAACGTCTCAGGAACACAACCAATGACAAAATAAAAACTGTTTTCATTATGTGGCAATTCAATCAATCACAAAAGGGAACCTGACGAAGGAATATTGTCGCATCCCTCCTGCCAAGCAACATCCTGATGTGACAAGTAAAATGCAATTTGTGGACTATAGATTTTATATTTCTACAATATAgggaacattttattttatagGACCTGACACTTTTAAACTCAGAGATTCTGGCTCAGCAATATGATCCAGTAGTTGACAACCCATCTGACATATATTTATCCCATATGGATAACAATGTCAAATTCGAATTGTTATATTCTTTAAAAATGGAATTCAATGAGGTAAAATTAGCACCAGTATTCTTTGCACAACTTCTATAGGTATGGATTTCAGGTTGATGTTTAGTGTTGAGTCatcaaacctctctctctgtcctgtgtttGGTCTGGTTGGCATAACCTGTCCTGTGTTTGGTCTGGTTGGCATGACCTGTCCTGTGTTTGGTCTGGTTGGCATGACCTGTACTGTGCTGCCTTACCGACCTTGATGACAGTGGATTTAATAACCTGTTACAGTGACATGACCAAGGCAAGCCTAAGAAAGGTCAGTAGATTGATGAACGTGTTAATGTATTATCATATGTGATTTAAATGAGTATGTACTTTACTTACAtactgtgtagtgttgtgtatagACACTACATGTTAAAAGTCATGACTGTTTTCAGCCCAAATAAAGATGATTTGACTGAA

Function

symbol description
ppm1n Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of canonical Wnt signaling pathway. Predicted to be active in cytosol and nucleus.

NR:

description
protein phosphatase 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618322.2 True 2670 mRNA 0.52 6 37100645 37112941

Neighbor

gene id symbol gene type direction distance location
nectin3b LOC106603344 coding upstream 30225 37000940 ~ 37070420 (+)
diablob LOC106603345 coding upstream 103416 36988652 ~ 36997229 (+)
LOC110533794 ppme1 coding upstream 144873 36932249 ~ 36955772 (+)
mrpl48 LOC106603350 coding upstream 221689 36876675 ~ 36878956 (+)
LOC110533788 NA coding upstream 299056 36799376 ~ 36801589 (+)
LOC110533802 bhmg1 coding downstream 22255 37135196 ~ 37142473 (+)
LOC110533811 LOC106603334 coding downstream 146549 37259490 ~ 37277036 (+)
cnga2b cnga2 coding downstream 176094 37289035 ~ 37292481 (+)
nup62l LOC106603332 coding downstream 201974 37314915 ~ 37320614 (+)
LOC110533815 LOC106603329 coding downstream 240985 37353926 ~ 37359996 (+)
G884064 NA non-coding upstream 8991 37089562 ~ 37091654 (+)
G884006 NA non-coding upstream 104315 36926546 ~ 36996330 (+)
G884004 NA non-coding upstream 177810 36922483 ~ 36922835 (+)
G883989 NA non-coding upstream 201594 36898637 ~ 36899051 (+)
G883976 NA non-coding upstream 208364 36871635 ~ 36892281 (+)
G884113 NA non-coding downstream 59683 37172624 ~ 37173512 (+)
G884213 NA non-coding downstream 139393 37252334 ~ 37252559 (+)
G884242 NA non-coding downstream 185753 37298694 ~ 37298919 (+)
G884261 NA non-coding downstream 214044 37326985 ~ 37327209 (+)
G884210 NA non-coding downstream 215012 37327953 ~ 37328189 (+)
G883966 NA other upstream 249492 36849646 ~ 36851153 (+)
G883473 om-i other upstream 805098 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 1414072 35674201 ~ 35686573 (+)
G882624 NA other upstream 1684407 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 1642568 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 4599386 41712327 ~ 41717292 (+)
G890228 NA other downstream 4965274 42078215 ~ 42154093 (+)
G891133 NA other downstream 5869741 42982682 ~ 43109676 (+)
G891188 NA other downstream 5983779 43096720 ~ 43097617 (+)

Expression


Co-expression Network