sdhaf1 (sdhaf1)


Basic Information

Item Value
gene id sdhaf1
gene name sdhaf1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37119655 ~ 37123249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475043.2
GAGGAATGACCCGCCTGCACATTACGTATTTGTACGCATGAGTTTAGCTAGCAAATGTCGCCGTGACATCGCCTAGAAGTCTGATATGGGGAAGCAGTTCTGGCCTATCTTCATACTATACTGTCTTTGATACATAGCTAACATGAGTTATCATAAAGGTCGtgctgtgttagctagctagtgtttaAGCAATATGTTCCTCGAACGGTTTAAGTGGTAAATAGGTTATTAACGGGAGTTTCACACTTGATATGAAACGCATTTCATTATCAAATACAGGCAAAGTTACTATATTTTCGAAGTTGACACTGACTGTCAAGGTGTAGGAGACACTTCATCTACACCCTGATGCCTGTGTTGTGACGGTGAGGCTGCTTCATTCTCTGTCTTCTGGTAGGTCGTCTTCCCTGGTCATCTGTGTTGCTGTTGCCCTGTGTTCCACACCATGGCACGCCACAGTAAGCTGCAGAAACAGGTGTTGTCTCTGTTCCGCCAGTTCCTGCGTGCTGGCCAGGACAAGCCAGGCTTTCTACCTAGGATCCGGGATGAGTTCCGAGAGAACTCCAGCATCAAGAAGACTGATGTCATGCACATAGAATATCTTTACCGGCGTGGACAGAGACAGCTAGACCAGCTGAAAGATGTGAACACAAAGCAACTAGGAACTTTCTCCAAACCCAAAGTAGAGAGATGACCAAAACCATTTCCTTCTCTACAGCCTCTGTTGTCGCTACCTCTAACTGGATACGTGGGCATCCGCTATGTAATTACATTAATCATTCACTAGTCAGATTACTACTCCTTTCAATCTGCAGCTGAGTAAGTGCAGTCATTGTCCTAAGCAATGGCCATGGATCTGAACTGTATGACAGCACTATTGTCCTCTGTCAGAGAGGTGGACACCACTGATGAGGATGAACATTTGAAAACGGTCTCTGGCCAGTTGGGTTGAGCAGACCAGTTGCTCTGGTCATTGTTGTAAAATACTTTTGTCTAGCTacattaacctgttgagtgtttTGGATTAAAGATGATATCATCAGTATGAGAAGTGAATTTGACTATTTTAAGTCTAGCTAATACTAGTATATGCTTACGTGTCACAAGAGGTCAAGTAATGCCATTATATAATGCTTATGAATTGTACGGTAAATAAACAtgaattgtcacatacaccaga
>XM_021618323.2
ACCGCAAGAGAGGAATGACCCGCCTGCACATTACGTATTTGTACGCATGAGTTTAGCTAGCAAATGTCGCCGTGACATCGCCTAGAAGTCTGATATGGGGAAGCAGTTCTGGCCTATCTTCATACTATACTGTCTTTGATACATAGCTAACATGAGTTATCATAAAGGTCGtgctgtgttagctagctagtgtttaAGCAATATGTTCCTCGAACGGTTTAAGTGGTAAATAGGTTATTAACGGGAGTTTCACACTTGATATGAAACGCATTTCATTATCAAATACAGGCAAAGTTACTATATTTTCGAAGTTGACACTGACTGTCAAGGTCGTCTTCCCTGGTCATCTGTGTTGCTGTTGCCCTGTGTTCCACACCATGGCACGCCACAGTAAGCTGCAGAAACAGGTGTTGTCTCTGTTCCGCCAGTTCCTGCGTGCTGGCCAGGACAAGCCAGGCTTTCTACCTAGGATCCGGGATGAGTTCCGAGAGAACTCCAGCATCAAGAAGACTGATGTCATGCACATAGAATATCTTTACCGGCGTGGACAGAGACAGCTAGACCAGCTGAAAGATGTGAACACAAAGCAACTAGGAACTTTCTCCAAACCCAAAGTAGAGAGATGACCAAAACCATTTCCTTCTCTACAGCCTCTGTTGTCGCTACCTCTAACTGGATACGTGGGCATCCGCTATGTAATTACATTAATCATTCACTAGTCAGATTACTACTCCTTTCAATCTGCAGCTGAGTAAGTGCAGTCATTGTCCTAAGCAATGGCCATGGATCTGAACTGTATGACAGCACTATTGTCCTCTGTCAGAGAGGTGGACACCACTGATGAGGATGAACATTTGAAAACGGTCTCTGGCCAGTTGGGTTGAGCAGACCAGTTGCTCTGGTCATTGTTGTAAAATACTTTTGTCTAGCTacattaacctgttgagtgtttTGGATTAAAGATGATATCATCAGTATGAGAAGTGAATTTGACTATTTTAAGTCTAGCTAATACTAGTATATGCTTACGTGTCACAAGAGGTCAAGTAATGCCATTATATAATGCTTATGAATTGTACGGTAAATAAACAtgaattgtcacatacaccaga
>XR_002475046.2
aaaagttTTGAGGTCCACATGGCACCGCAAGAGAGGAATGACCCGCCTGCACATTACGTATTTGTACGCATGAGTTTAGCTAGCAAATGTCGCCGTGACATCGCCTAGAAGTCTGATATGGGGAAGCAGTTCTGGCCTATCTTCATACTATACTGTCTTTGATACATAGCTAACATGAGTTATCATAAAGGTCGtgctgtgttagctagctagtgtttaAGCAATATGTTCCTCGAACGGTTTAAGTGGTAAATAGGTTATTAACGGGAGTTTCACACTTGATATGAAACGCATTTCATTATCAAATACAGGCAAAGTTACTATATTTTCGAAGTTGACACTGACTGTCAAGGTGTAGGAGACACTTCATCTACACCCTGATGCCTGTGTTGTGACGGTGAGGCTGCTTCATTCTCTGTCTTCTGTTCCTGCGTGCTGGCCAGGACAAGCCAGGCTTTCTACCTAGGATCCGGGATGAGTTCCGAGAGAACTCCAGCATCAAGAAGACTGATGTCATGCACATAGAATATCTTTACCGGCGTGGACAGAGACAGCTAGACCAGCTGAAAGATGTGAACACAAAGCAACTAGGAACTTTCTCCAAACCCAAAGTAGAGAGATGACCAAAACCATTTCCTTCTCTACAGCCTCTGTTGTCGCTACCTCTAACTGGATACGTGGGCATCCGCTATGTAATTACATTAATCATTCACTAGTCAGATTACTACTCCTTTCAATCTGCAGCTGAGTAAGTGCAGTCATTGTCCTAAGCAATGGCCATGGATCTGAACTGTATGACAGCACTATTGTCCTCTGTCAGAGAGGTGGACACCACTGATGAGGATGAACATTTGAAAACGGTCTCTGGCCAGTTGGGTTGAGCAGACCAGTTGCTCTGGTCATTGTTGTAAAATACTTTTGTCTAGCTacattaacctgttgagtgtttTGGATTAAAGATGATATCATCAGTATGAGAAGTGAATTTGACTATTTTAAGTCTAGCTAATACTAGTATATGCTTACGTGTCACAAGAGGTCAAGTAATGCCATTATATAATGCTTATGAATTGTACGGTAAATAAACAtgaattgtcacatacaccaga
>XR_002475044.2
TGTGTCGTAATTTCTTTGGTGGGAAAACTATTTTGCAAAACTCAATAAATATAAACACTCAGTTGTTagtctgtatgtcccactcataatAAATGTCCACGATGTTAGGCTAAATTATGGAGAAAATGTAAATATGTTTGATAAAGTTAAAATCCTGTTCAAGTGTTCACCATTTTGCTTGCCAGCTCAATCTTGCTCACTCACAGAGCTATGGCTAATTTAGGCTCAAAATTCCCACCCTGTTAGGTTCCACCCAGTTAGGATTATGCGCCTAACAAATTGGAAAATGCACCCAATATTTTTGTGTAGGAGACACTTCATCTACACCCTGATGCCTGTGTTGTGACGGTGAGGCTGCTTCATTCTCTGTCTTCTGGTAGGTCGTCTTCCCTGGTCATCTGTGTTGCTGTTGCCCTGTGTTCCACACCATGGCACGCCACAGTAAGCTGCAGAAACAGGTGTTGTCTCTGTTCCGCCAGTTCCTGCGTGCTGGCCAGGACAAGCCAGGCTTTCTACCTAGGATCCGGGATGAGTTCCGAGAGAACTCCAGCATCAAGAAGACTGATGTCATGCACATAGAATATCTTTACCGGCGTGGACAGAGACAGCTAGACCAGCTGAAAGATGTGAACACAAAGCAACTAGGAACTTTCTCCAAACCCAAAGTAGAGAGATGACCAAAACCATTTCCTTCTCTACAGCCTCTGTTGTCGCTACCTCTAACTGGATACGTGGGCATCCGCTATGTAATTACATTAATCATTCACTAGTCAGATTACTACTCCTTTCAATCTGCAGCTGAGTAAGTGCAGTCATTGTCCTAAGCAATGGCCATGGATCTGAACTGTATGACAGCACTATTGTCCTCTGTCAGAGAGGTGGACACCACTGATGAGGATGAACATTTGAAAACGGTCTCTGGCCAGTTGGGTTGAGCAGACCAGTTGCTCTGGTCATTGTTGTAAAATACTTTTGTCTAGCTacattaacctgttgagtgtttTGGATTAAAGATGATATCATCAGTATGAGAAGTGAATTTGACTATTTTAAGTCTAGCTAATACTAGTATATGCTTACGTGTCACAAGAGGTCAAGTAATGCCATTATATAATGCTTATGAATTGTACGGTAAATAAACAtgaattgtcacatacaccaga
>TU1006602
GCTAACATGAGTTATCATAAAGGTCGtgctgtgttagctagctagtgtttaAGCAATATGTTCCTCGAACGGTTTAAGTGGTAAATAGGTTATTAACGGGAGTTTCACACTTGATATGAAACGCATTTCATTATCAAATACAGGCAAAGTTACTATATTTTCGAAGTTGACACTGACTGTCAAGGTGTAGGAGACACTTCATCTACACCCTGATGCCTGTGTTGTGACGGTGAGGCTGCTTCATTCTCTGTCTTCTGGTAGGTCGTCTTCCCTGGTCATCTGTGTTGCTGTTGCCCTGTGTTCCACACCATGGCACGCCACAGTAAGCTGCAGAAACAGGTGTTGTCTCTGTTCCGCCAGTTCCTGCGTGCTGGCCAGGACAAGCCAGGCTTTCTACCTAGGATCCGGGATGAGTTCCGAGAGAACTCCAGCATCAAGAAGACTGATGTCATGCACATAGAATATCTTTACCGGCGTGGACAGAGACAGCTAGACCAGCTGAAAGATGTGAACACAAAGCAACTAGGAACTTTCTCCAAACCCAAAGTAGAGAGATGACCAAAACCATTTCCTTCTCTACAGCCTCTGTTGTCGCTACCTCTAACTGGATACGTGGGCATCCGCTATGTAATTACATTAATCATTCACTAGTCAGATTACTACTCCTTTCAATCTGCAGCTGAGTAAGTGCAGTCATTGTCCTAAGCAATGGCCATGGATCTGAACTGTATGACAGCACTATTGTCCTCTGTCAGAGAGGTGGACACCACTGATGAGGATGAACATTTGAAAACGGTCTCTGGCCAGTTGGGTTGAGCAGACCAGTTGCTCTGGTCATTGTTGTAAAATACTTTTGTCTAGCTacattaacctgttgagtgtttTGGATTAAAGATGATATCATCAGTATGAGAAGTGAATTTGACTATTTTAAGTCTAGCTAATACTAGTATATGCTTACGTGTCACAAGAGGTCAAGTAATGCCATTATATAATGCTTATGAATTGTACGGTAAATAAACAtgaattgtcacatacaccagataggtgaagtgaaatatgttgttttatagggtcagccatagtagtatggcgcccctggagcaaattagggttaagtgccttgcttaagggcacatcaacaggttTTTCACCCTGTTGTCTTgggtattcaaaccagtgacGTTTCAGtagctggcccaacgctctaactgctaggctaccttccACTCACAGGTGGCATCACACAAATTAGAAATGCCTGAGTAATTTAGATATTACTGTCAGAACCAGAAAGTAGCTCAAGCTAACAGCccaatcccaaatggaacccttgaCCCTACTCCCTATGCACTTGTGGAAATCTGAAATGATTTGGTTGGTATAAGCAATATGGTGAAACTTCAACCTAGCATATGAGAGGGCAAGGTGCAGCTATTAGCATATTGGTTGCACCTGttaaatcctctcagatctcaaGTGTGTAGGGTTTACTATAGGGGGatatctcaattgcatttccttgactcctcctgtcctctctcctcacctcattctcaaaacccattggaggagaaggtcagaggggtgtgaggagagaggacatgaggaggAAATGTAATTCAGATTCTTCCCTAGGGGTCCATTTGAGATTAGGTCATAATCTTGACAGCTCAATATGTAAGGCTCTCGCTTTAGCCGCTAGGTGGCGGTAATATGGGTAGATCTCAGCACATGAACTAGAAGCAAAGATGGTGGACAAATGAAAGATGCTGTTTACCATTGAGAAAATGGTCAGTTCTGGTCTGCTTAACGGGTTGACTCTAGGCACCAATGTATTAGCAGCTGGCTCTGGTCTGTTTagttcagggatgggcaactggtggcCCCTTTAATGTCCCCCAGatcaatcccccccccctcctctaaacttatcatggttgaattactttGTTAGTAATCTCACTaggatatcatattaaaaactgcaaacaattctctccaccctatggcaaaatgtgtagaattgcaggaaattagctgtaaaactgtgGCACCTCATGatgaattcagattttttttgtggccccccacccccatcaaagttgcccatccctggattagttaattgactgtgtaacaCTGtataggaacacctgctcttttcatgacatagactgaccaggtgaatccaggtggaagctatgatcccttattgatgtcacctgttaaatccacttcaatcagtgtagatgaaggggaggagacttttgaaaaaaggatgttaagccttgagacatggattgtgtatgtgtgccatttagagggtgaatgggcaagacaaaagacttaagtgcctttgacagagtatggtagtagatgccaggcacactggtttgagtgtgtcgagaactgcaacgctgctttGTTTTTcaactcaacagtttcctgtgtgtatcaagaatccAATCAACTTGagataactgtgggaagcattggggtcaacatgggccagtattcctgtggaacgctctcgacaccttgtagagtccatgtcctgatgaattgaggctgttgtgACTGCAAAAGagggtg

Function

symbol description
sdhaf1 Predicted to be involved in mitochondrial respiratory chain complex II assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex II deficiency. Orthologous to human SDHAF1 (succinate dehydrogenase complex assembly factor 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475043.2 False 1180 mRNA 0.43 2 37121206 37122813
XM_021618323.2 False 1112 mRNA 0.43 2 37121206 37122822
XR_002475046.2 False 1109 mRNA 0.42 3 37121206 37122845
XR_002475044.2 False 1163 mRNA 0.42 2 37121206 37123249
TU1006602 True 2595 lncRNA 0.44 2 37119655 37122677

Neighbor

gene id symbol gene type direction distance location
LOC110533799 LOC106603238 coding downstream 3945 37113130 ~ 37117261 (-)
rtn2b rtn2 coding downstream 21652 37089567 ~ 37099554 (-)
LOC110533798 LOC106603343 coding downstream 31834 37078928 ~ 37089372 (-)
LOC110533104 LOC106603410 coding downstream 147444 36970368 ~ 36973762 (-)
LOC110533795 LOC106603346 coding downstream 164277 36955967 ~ 36956929 (-)
qpctlb LOC106567815 coding upstream 4386 37127635 ~ 37134997 (-)
LOC110533803 LOC106603339 coding upstream 19657 37142906 ~ 37151223 (-)
itpkca LOC106603337 coding upstream 34413 37157662 ~ 37176800 (-)
LOC110533807 LOC106603336 coding upstream 54759 37178008 ~ 37185014 (-)
LOC110533808 LOC106603409 coding upstream 69864 37193113 ~ 37195456 (-)
G884653 NA non-coding downstream 8274 37112151 ~ 37112932 (-)
G884542 NA non-coding downstream 82697 36996492 ~ 37038509 (-)
G884519 NA non-coding downstream 198840 36922166 ~ 36922366 (-)
G884398 NA non-coding downstream 341480 36756002 ~ 36779726 (-)
G884423 NA non-coding downstream 379163 36740710 ~ 36742043 (-)
G884705 NA non-coding upstream 132638 37255887 ~ 37256086 (-)
G884719 NA non-coding upstream 170023 37293272 ~ 37293563 (-)
G884725 NA non-coding upstream 177523 37300772 ~ 37301123 (-)
G884728 NA non-coding upstream 182915 37306164 ~ 37306394 (-)
G884735 NA non-coding upstream 196550 37319799 ~ 37320543 (-)
scn4bb LOC106603364 other downstream 455849 36652707 ~ 36665717 (-)
G883754 NA other downstream 728679 36391103 ~ 36392527 (-)
G883753 NA other downstream 730292 36389997 ~ 36390914 (-)
G883128 NA other downstream 1240255 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1522121 35598317 ~ 35599085 (-)
G884736 NA other upstream 193668 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 475384 37518096 ~ 37704039 (-)
G885767 NA other upstream 1115701 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2060449 39183698 ~ 39185578 (-)
G887329 NA other upstream 2094064 39217313 ~ 39217738 (-)

Expression


Co-expression Network