LOC110533803 (LOC106603339)


Basic Information

Item Value
gene id LOC110533803
gene name LOC106603339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37142906 ~ 37151223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990201.1
ACCCTGGTGGGTGAGACATGGGGAGTGAGAGacgggaaggagggaggaaagggacaCACCGGTGGGAGACAGGCGTAGTGAGACAGAGACCCTAGTGGGAGGGACCTTGGTGGGGTATAGATTTATATGTGTGCGGATTCTGGGTCAGCTGAGAGCCGCAGGGTCCCAGGGAGGGGAGGATTAGGGGAAACGTGGGACACACGCTCCCCTCTACCATCACCATATGACACATAACTTATAAAAACACACTGGGTGGGGCATCGTGGCAGCAATAAATTATTGGATTAATGCTTGGTGTCTACAGCAGCCCTCAGGGATATAACGCTACCACAGTGGACAAACCTCGCATGCTTAGAGCCACTATTACATCCAGCCCCTCGGATTCCAACCACCCTGTCCAGCACCAGAGCCAGCAACCCAGACCAAACCAGCAGCAGGTCATTAAGCAGCAGCACCAGAGCCAGCAACCCAGACCAAACCAGCAGCAGGTCATTAAGCAGCAGCACCAGCCAAGTCGCAGTCAAAAGCCTGTCTACCAGCCAAGCTTCAGTCCCACTCCAATCTATAGGAGACTCACAACCTGGCAGCACAAGGACAACACCAATACAGACAACACCATCAAGACTGACAGCCCTCACAGTAACAGAATCAAGagACAGGTGGACATGACGTCCCAGAACGTGTTGGGTCAGCCGCGTGTCCTGGCCTCTCTGTGCGGCCCGCCCTCTCCACGACAGACCCACAAGACAACTAACCTAGAGGAGGAACTGAGGCTcatcatactggacacagaggaCTCAGGGAGGGATGCAtcctgcCGTCATAGCCTCTCTACAGAGATCAGCCTCGGCAGTGGTCCCCTGGATTCCAGTCTGGCATGTTCCCCAGTCTCTGACTGCCCTGAGCTGGAGGGGCTTGAAGATCTGTCTGCCTCTGAGCTGTCTTTGACAGAGGGATGGGACCCCGGGCACATCCCCCTACTGGCCCCTTCCTGGGGCCTGGAGTGGAGCAAACTTGTCAATGCTGCCAAGGCCTATGAAGCAAAGAGGACAGTGGAGCCCATTCCTCCCAGCAAGTCCAAGAAGCATGGATCAGAGGGTGGAACTGCTGCTTGCCCACCTAATCACTACCCTCCTCAGGGCTACAATGCCCAGCCCACATTAAgaagTGAAGTGCCCAGTGATCTGTCAAGacttcaccacctggaggcgcTGCTGAGACACTTGGAGAGCAACCTGGAGAAGGAAAGGGAGGATAAAGTAGCCCTGATGGAGGAAGTGACGATTCTGAGAGAGACCAACCAGCGCCTGTGGGAGGAGTCTCTTTCATCCAACGAACAGCTCCGTAAACTCAGCCTGTTGTTCAACATGGCCCCAGGAATGatgcctagagagagagaatgaccagcgacactaagaggagagagagataagaggagaaaagaggagtaGAGGAAAAATGGTTTCAACAAAGATAGTACCTTGAAACAGAGTTTACAAATGTAAATTGTCTTCAAAATGTGATCAGAGAAAGAGGACAGATCACGGCGAGTTACCAGAGTTTGCTTGTGGAGGTTACTTATGCTGGGACAGTGACATGTACAAGCTGGCTAAATGCTTGAGTTGTTAGCCAGTTCAGCTTTACACACTTGCTACGTCAGTTTTGTAATTCTCATGTCCTCTCGCCTCTCCTGCTtgtcaaaacccattggatgagaaaacCAGAGGTCcatcccctctgaccttctccaccaatgggTACAATAAAATATTTAAGAAGgcactgctgagatttgaactcaggatctcttGTTTACTAGACAGGTACTTTAAACCAACTAAGCCACATCACCCTTAGCTGTAATTTCCATTGTGGGTATGAAAACCCACAACTATTTTGAATCAACCCAGTCATTTTCATTTAACCCATAACTCTGTCTTGCAAAATTACATGTCAAAATAACAGATGTAATTTcctaatattggaatcgatacGGACGCCTTAAATTGACTAGCAAAAGggtttcttaaactatggtttgggaacAAAAGTGGgccctgagcatgtgagaggtgTGTTGCGAGTTATGAGTAAACATTTAGAATCATACCCTATTTCTTCTTCATTTGGGTTGTTTGAGGACAGTACATTTCCCATTTGGGTCTTGATTTTAAAAATCATAAGAACCTTTGAAATAGCAGATGAATCAGTTTGTGTAAGTCATTAAGCTACCATGAGCTGCAGGACTTTATCAAATGGCAGAGTTTCTTAGTTTACACAGTAAGTTTAAACTCATTCAAAGTAAGGGCCTTTCGCCATGACATTCTGTAAAGCAATGCCGTGACCGGGATTCGAACCAGGATTTCCGAGGCCACAATGCAGAGTACTGACCACTATAAGATCACAGCGAGCTACAGGAGTTTGCTTATAGGGGATATTTATGCTGGGAAAGTGACGTGTACAAGCTGGCTAAATGCTTGAGTTGTTTGCCAGTTCAACTTTACACAGTTGGTACGTTTTAACTCTTTCAAAAAGTGTCCTTTTTCGaagacattggaatatctcaattgcatatTCCACACGTCCTCTCCCCTCTCGCCTCGCCTACTTCTCAAAACTCATTGGATGAGAAAACCAGAgatccctcccctctgaccttttcCACCAATGGGTAAAAAGAAATGCACAGCTGCGATTTGAACTCAGGATGTCCTGTTTACTAGACCAGCTAAATCACAGCCCCCACGCGTTGGAGATAGATGTAATTTCTATCGCGGGTATGAAAATCGGTCTATTTTGAATCAAATCagtctcattcatttaacccatatctctgtctagCGAAATAACATGTCACAAAACATATGTAATTTCCTAGTATTGGAATCGACAGGACACCTTGAATTgactagcaacagggtttcttaaactGTGGTTTGGTACCCAAAGTGGGCCCCAAACATAAGAGTTGAGTCGCAAGTTATGAATAAACATTTATAATCGCA
>XM_021618325.2
taaaccagggtctgtaggaacgtcctctagcactgagatgcagtgccttagaccgctgcaccactcctGAGCCCACTCAGGAATGAACACATGGTTTACTCAGCAAATATTTAGAGCCAAAATAGCATGTCATGAAATGTCAAAAAATGAAATTCTATAGGGGCTTGtgtcacgtacacacacacatgcacgcgctcgcacgaacgcacgcacgcacacgcacacacacacaaaaagacaaAGAGCACTGTGAGCCCATTGAGGATATGTGAACTGGCTCATTGACACTTGGGAGAGGTGCTGTGGAACATACCAACCATTACCTCTGTAAAACACTCACTCTTTCTCAGTTGGAGGTGCTGTACTACCCCCACCCAGCAGTGACTCTCTCTCCATGATGGCCTCCTATAGCCCTACCCACAAGGGCTGGTTTGGTGAGAGGGGGGTTCACCAGGGGATTGGGCTGGACATCCTCTTCAGTGGCAGAGACTTTGACACATCTAATCTGTACTCCCAAGATGACACTCAACAACTTCAGGAGGCCAAGTCCCATTATGCCTGTCCCAGGGCCCCCCAGAGGTCCCTGCATGGCTGGGGCACATACAGCCCCCCTCCACAGAGACCCAGCACTGGGAGCAGAGGGGGGACCAACCAGTGTCAGAGCTACCACGCCCAAACCCTGCCCCTGCCCTTGCCCCGCAGAGCACTGCCTGTCTTCAGACCCTGTGTCTACAGCAGCCCTCAGGGATATAACGCTACCACAGTGGACAAACCTCGCATGCTTAGAGCCACTATTACATCCAGCCCCTCGGATTCCAACCACCCTGTCCAGCACCAGAGCCAGCAACCCAGACCAAACCAGCAGCAGGTCATTAAGCAGCAGCACCAGAGCCAGCAACCCAGACCAAACCAGCAGCAGGTCATTAAGCAGCAGCACCAGCCAAGTCGCAGTCAAAAGCCTGTCTACCAGCCAAGCTTCAGTCCCACTCCAATCTATAGGAGACTCACAACCTGGCAGCACAAGGACAACACCAATACAGACAACACCATCAAGACTGACAGCCCTCACAGTAACAGAATCAAGagACAGGTGGACATGACGTCCCAGAACGTGTTGGGTCAGCCGCGTGTCCTGGCCTCTCTGTGCGGCCCGCCCTCTCCACGACAGACCCACAAGACAACTAACCTAGAGGAGGAACTGAGGCTcatcatactggacacagaggaCTCAGGGAGGGATGCAtcctgcCGTCATAGCCTCTCTACAGAGATCAGCCTCGGCAGTGGTCCCCTGGATTCCAGTCTGGCATGTTCCCCAGTCTCTGACTGCCCTGAGCTGGAGGGGCTTGAAGATCTGTCTGCCTCTGAGCTGTCTTTGACAGAGGGATGGGACCCCGGGCACATCCCCCTACTGGCCCCTTCCTGGGGCCTGGAGTGGAGCAAACTTGTCAATGCTGCCAAGGCCTATGAAGCAAAGAGGACAGTGGAGCCCATTCCTCCCAGCAAGTCCAAGAAGCATGGATCAGAGGGTGGAACTGCTGCTTGCCCACCTAATCACTACCCTCCTCAGGGCTACAATGCCCAGCCCACATTAAgaagTGAAGTGCCCAGTGATCTGTCAAGacttcaccacctggaggcgcTGCTGAGACACTTGGAGAGCAACCTGGAGAAGGAAAGGGAGGATAAAGTAGCCCTGATGGAGGAAGTGACGATTCTGAGAGAGACCAACCAGCGCCTGTGGGAGGAGTCTCTTTCATCCAACGAACAGCTCCGTAAACTCAGCCTGTTGTTCAACATGGCCCCAGGAATGatgcctagagagagagaatgaccagcgacactaagaggagagagagataagaggagaaaagaggagtaGAGGAAAAATGGTTTCAACAAAGATAGTACCTTGAAACAGAGTTTACAAATGTAAATTGTCTTCAAAATGTGATCAGAGAAAGAGGACAGATCACGGCGAGTTACCAGAGTTTGCTTGTGGAGGTTACTTATGCTGGGACAGTGACATGTACAAGCTGGCTAAATGCTTGAGTTGTTAGCCAGTTCAGCTTTACACACTTGCTACGTCAGTTTTGTAATTCTCATGTCCTCTCGCCTCTCCTGCTtgtcaaaacccattggatgagaaaacCAGAGGTCcatcccctctgaccttctccaccaatgggTACAATAAAATATTTAAGAAGgcactgctgagatttgaactcaggatctcttGTTTACTAGACAGGTACTTTAAACCAACTAAGCCACATCACCCTTAGCTGTAATTTCCATTGTGGGTATGAAAACCCACAACTATTTTGAATCAACCCAGTCATTTTCATTTAACCCATAACTCTGTCTTGCAAAATTACATGTCAAAATAACAGATGTAATTTcctaatattggaatcgatacGGACGCCTTAAATTGACTAGCAAAAGggtttcttaaactatggtttgggaacAAAAGTGGgccctgagcatgtgagaggtgTGTTGCGAGTTATGAGTAAACATTTAGAATCATACCCTATTTCTTCTTCATTTGGGTTGTTTGAGGACAGTACATTTCCCATTTGGGTCTTGATTTTAAAAATCATAAGAACCTTTGAAATAGCAGATGAATCAGTTTGTGTAAGTCATTAAGCTACCATGAGCTGCAGGACTTTATCAAATGGCAGAGTTTCTTAGTTTACACAGTAAGTTTAAACTCATTCAAAGTAAGGGCCTTTCGCCATGACATTCTGTAAAGCAATGCCGTGACCGGGATTCGAACCAGGATTTCCGAGGCCACAATGCAGAGTACTGACCACTATAAGATCACAGCGAGCTACAGGAGTTTGCTTATAGGGGATATTTATGCTGGGAAAGTGACGTGTACAAGCTGGCTAAATGCTTGAGTTGTTTGCCAGTTCAACTTTACACAGTTGGTACGTTTTAACTCTTTCAAAAAGTGTCCTTTTTCGaagacattggaatatctcaattgcatatTCCACACGTCCTCTCCCCTCTCGCCTCGCCTACTTCTCAAAACTCATTGGATGAGAAAACCAGAgatccctcccctctgaccttttcCACCAATGGGTAAAAAGAAATGCACAGCTGCGATTTGAACTCAGGATGTCCTGTTTACTAGACCAGCTAAATCACAGCCCCCACGCGTTGGAGATAGATGTAATTTCTATCGCGGGTATGAAAATCGGTCTATTTTGAATCAAATCagtctcattcatttaacccatatctctgtctagCGAAATAACATGTCACAAAACATATGTAATTTCCTAGTATTGGAATCGACAGGACACCTTGAATTgactagcaacagggtttcttaaactGTGGTTTGGTACCCAAAGTGGGCCCCAAACATAAGAGTTGAGTCGCAAGTTATGAATAAACATTTATAATCGCA

Function

NR:

description
signal-induced proliferation-associated 1-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990201.1 False 3005 mRNA 0.47 7 37142906 37149332
XM_021618325.2 True 3436 mRNA 0.48 8 37142906 37151223

Neighbor

gene id symbol gene type direction distance location
qpctlb LOC106567815 coding downstream 7909 37127635 ~ 37134997 (-)
sdhaf1 sdhaf1 coding downstream 19657 37119655 ~ 37123249 (-)
LOC110533799 LOC106603238 coding downstream 25645 37113130 ~ 37117261 (-)
rtn2b rtn2 coding downstream 43352 37089567 ~ 37099554 (-)
LOC110533798 LOC106603343 coding downstream 53534 37078928 ~ 37089372 (-)
itpkca LOC106603337 coding upstream 6439 37157662 ~ 37176800 (-)
LOC110533807 LOC106603336 coding upstream 26785 37178008 ~ 37185014 (-)
LOC110533808 LOC106603409 coding upstream 41890 37193113 ~ 37195456 (-)
LOC110533809 LOC106603335 coding upstream 50871 37202094 ~ 37248453 (-)
LOC110533810 NA coding upstream 92269 37243492 ~ 37244284 (-)
G884653 NA non-coding downstream 29974 37112151 ~ 37112932 (-)
G884542 NA non-coding downstream 104397 36996492 ~ 37038509 (-)
G884519 NA non-coding downstream 220540 36922166 ~ 36922366 (-)
G884398 NA non-coding downstream 363180 36756002 ~ 36779726 (-)
G884705 NA non-coding upstream 104664 37255887 ~ 37256086 (-)
G884719 NA non-coding upstream 142049 37293272 ~ 37293563 (-)
G884725 NA non-coding upstream 149549 37300772 ~ 37301123 (-)
G884728 NA non-coding upstream 154941 37306164 ~ 37306394 (-)
G884735 NA non-coding upstream 168576 37319799 ~ 37320543 (-)
scn4bb LOC106603364 other downstream 477549 36652707 ~ 36665717 (-)
G883754 NA other downstream 750379 36391103 ~ 36392527 (-)
G883753 NA other downstream 751992 36389997 ~ 36390914 (-)
G883128 NA other downstream 1261955 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1543821 35598317 ~ 35599085 (-)
G884736 NA other upstream 165694 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 447410 37518096 ~ 37704039 (-)
G885767 NA other upstream 1087727 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 2032475 39183698 ~ 39185578 (-)
G887329 NA other upstream 2066090 39217313 ~ 39217738 (-)

Expression


Co-expression Network