LOC110533808 (LOC106603409)


Basic Information

Item Value
gene id LOC110533808
gene name LOC106603409
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37193113 ~ 37195456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618335.2
tatctgtactctactttactattTTACAGCAGTGGTAGAATTGTGAGACAGCAGAGGAAGTCACGCCCTGCGTGAACACTGAAGGCATTGTAGAGGTAAAGTGATTGCACTCATTTCTCTTTGGCTTCCTCTAAACAGACACACATCTCTCAGTGGACACGGCCATCAGAAGACTGATTCAACAGGGTTCACTGGACTGATGACAAGGATGCAACAGTATTGGACCACGGAGAGAGGTCTAACTGGAGGCACAGACAATATGAGTCTGGAGTCAGGGATGAGTAATCTGACATGTGATTGTCCCATCGACAGCTTCAAGCACAGTGTGTTTCCTGCTACGTACCTGCTCATCTTCTTCCTGGGCCTAATAGCCAACAGTGCCTCCCTCTGGGTCTTTCTGAGCAtgtacaggaggaggaggagcatcaCCATGGTCAACCTGTACATGGTGAACCTGCTGATGTCTGACCTCATGCTGGTGTGCTCTCTGCCCCTGAGATCAGCATACTACCTGCTGGACTCCCATTGGCCGTTTGGGGACCTCACCTGCCGCCTGGTCTCCTACGTATTCTATATCAACATGTATGGCTCTGTCTACTTCCTGCTGGCCCTGAGTGTCCTCCGTTACCTAGCTGTATCACACCCCTACACCTTCATGAGTCTGGAGGGTGGATCCTGTGGTTGGGGAGGGTGTCTACTCATCTGGATATTTGTGTCCCTGGCCTCTACACCCCTACTGAGTATTGGGACTATCCAGGAGGGGGAAGAGCAGACCCGCTGTCTGGAGCTGGGCAGCAGCTTGGGCACCATCATTCTTCTGAACCGTGCTGCCCTGGTGGTGGGCTTTGCCCTGCCCTTCACTGTCATCTCTGTCTGCTACATATGTGTGCTGCTCAGCCTGAGGCAGTGTAGGGCTGGGGTGGAGGGGATGAGGAAGCCCTCTACAAGAAAGTCTTGTGCCCTTGTCATCCTCGGTCTCTGCATCTTCCTGATCTGCTTCCTGCCCTATCATGTGGTGCGAACCCTCTTCCTGGCAGCAGAGCAGAATGTTCAACTAAATGGCTGTGAGGATTCTTGCAGCTACCTCCAGGGGATTCGGAAGGCTGCCGTGGTAACGCTCTGTCTTGCAGCGGGTAACAGCTGCCTGGACCCGTTCCTTTTCTTCTTTGTGGGAGAAAACTTCAGAGATTTCTGCACAAAAAAAATTGGGAGGCAGAGGAGAGTTattgacaacacagagagaccaaGGATTCAAGAGCTGCAGCCCATAGAATTAACAGTCAATTTATAATAAACTTGGCACTTTAAGCTTATCAAAAATGTTGCATTCACTTTCACATTCAAATAAAATGTACACCTCGTCTATAGATGGATGATTTGTAGTTATAAAATTCCTGTAGAGCCAAATTGTTTGTGGATTTATAATTATGGGATCATTGAAAATAGGTTTATGATGAGGTAGTCCTGGGTCTTCTTCAAAAATGGTGGCTTTTTGACCAGCCAACTTTTTTAAATGATTGAACTTATTTTTTTAGTTAAAACCCCTTAACATTATGAATCAACATATATTACAGCTTAATGTATTTCGATATTTTTtccacattaaataaataaatgcctgcctgcctgctgaaAATCTTTTCCTGTGCGTGTGTAGGCAACCTGCCCCTCCGAAGCATGGtctagtacagtggttcccagcCTTTTTCATTTACTGTACCACCAACGGAATTTTGCTCTGCCTGgagtacccctgtggataggccaagtacacccatcctagtacccctggttgggaaccactggtcaaGTAGTgtgattcaga

Function

NR:

description
cysteinyl leukotriene receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618335.2 True 1825 mRNA 0.47 2 37193113 37195456

Neighbor

gene id symbol gene type direction distance location
LOC110533807 LOC106603336 coding downstream 8099 37178008 ~ 37185014 (-)
itpkca LOC106603337 coding downstream 16313 37157662 ~ 37176800 (-)
LOC110533803 LOC106603339 coding downstream 41890 37142906 ~ 37151223 (-)
qpctlb LOC106567815 coding downstream 58116 37127635 ~ 37134997 (-)
sdhaf1 sdhaf1 coding downstream 69864 37119655 ~ 37123249 (-)
LOC110533809 LOC106603335 coding upstream 6638 37202094 ~ 37248453 (-)
LOC110533810 NA coding upstream 48036 37243492 ~ 37244284 (-)
chmp1b LOC106603331 coding upstream 153016 37348472 ~ 37351594 (-)
LOC110533816 LOC106603328 coding upstream 166733 37362189 ~ 37395821 (-)
LOC110533817 LOC105026967 coding upstream 204339 37399405 ~ 37402750 (-)
G884653 NA non-coding downstream 80181 37112151 ~ 37112932 (-)
G884542 NA non-coding downstream 154604 36996492 ~ 37038509 (-)
G884519 NA non-coding downstream 270747 36922166 ~ 36922366 (-)
G884398 NA non-coding downstream 413387 36756002 ~ 36779726 (-)
G884705 NA non-coding upstream 60431 37255887 ~ 37256086 (-)
G884719 NA non-coding upstream 97816 37293272 ~ 37293563 (-)
G884725 NA non-coding upstream 105316 37300772 ~ 37301123 (-)
G884728 NA non-coding upstream 110708 37306164 ~ 37306394 (-)
G884735 NA non-coding upstream 124343 37319799 ~ 37320543 (-)
scn4bb LOC106603364 other downstream 527756 36652707 ~ 36665717 (-)
G883754 NA other downstream 800586 36391103 ~ 36392527 (-)
G883753 NA other downstream 802199 36389997 ~ 36390914 (-)
G883128 NA other downstream 1312162 35880524 ~ 35880951 (-)
G882971 rb1 other downstream 1594028 35598317 ~ 35599085 (-)
G884736 NA other upstream 121461 37316917 ~ 37318864 (-)
LOC110533823 LOC106603321 other upstream 403177 37518096 ~ 37704039 (-)
G885767 NA other upstream 1043494 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 1988242 39183698 ~ 39185578 (-)
G887329 NA other upstream 2021857 39217313 ~ 39217738 (-)

Expression


Co-expression Network