LOC110533811 (LOC106603334)


Basic Information

Item Value
gene id LOC110533811
gene name LOC106603334
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37259490 ~ 37277036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618337.2
ATGTTCTGGCTACTCTGAACACCTAATGGGTAGTCAGCGGGCGGGGATAACATTCCACCCGCTCACTTTTCCGTGCCTTGCTGGATGAGGGAGGAAGTCTCTGGGCTCGAGCTGGACGTTTGTGGAATTTGGGGGGTATCTAGTTAGCTAAAGACCCACCTCTCTTGACTGACCACCTTCAGTCATTTCCATCAACATGGCAGGAAAGATCTCCAAAGACGAGCTGGAGGAGCTGCGAGAGGCGTTTGGCAAAATTGACCTCGATGGCAATGGATCCATCTGTGACTATGAGCTCCATGAACTGTTCAAGGAGGCCAACCTTCCCCTGCCTGGCTACAAAGTCAGGGAGATCATTCAGAAGCTGGATCGCAACAAGGACAACAAGATCAGCTTTGATGAGTTTCTGTCGATATTCCAGGAGTTGAAGAGCAGTGACATTGCCAAAAGCTTCCGCAAGGCCATTAACAGGAAGGAGGGGATCCTGGCCATTGGGGGTACATCTACGCAGTCCAGTGAGGGCACGCAACACTCCTTCTCTGAGGAGGAGCGGTACGCGTTTGTTAACTGGCTCAACACAGCGCTGGAGAATGACCCTGACTGCAAGCACGCCCTGCCCATGGACCCCAACTCAGATTCCCTCTTCAAGGCCATGGGCGACGGCATCGTTCTCTGTAAAATGATCAACCTGTCGGTGCCAGACACGATTGACGAGAGGACCATAAACAAGAAGAAGTTGACACCGTTCACAATACAGGAGAATCTGAACCTGGCTCTGAACTCGGCCTCTGCTATTGGCTGCCACGTGGTGAACATCGGGGCTCTGGACCTAAGGGAGGGGAAGCCCCACCTGGTACTGGGCCTGCTGTGGCAGATCATCAAGATCGGCCTTTTTGCTGACATTGAGCTCAGCAGAAATGAAGCCCTGGCTGCTCtgctgagagatggagagacccTGGAGGACCTGATGAAGCTGTCTCCAGAGGAGCTGCTGTTGCGCTGGGCTAACTTTCACCTGGAGAACGCTGGCTGGCAGAAGATCAATAACTTCAGCTCCGACATTAAGGACTCCAGAGCCTATTTCCACCTTCTCAACCAAATCTCCCCCAAAGGCACAGAGGAAGATCAACCACGCATAGACATCAGCATGGCAGGCTTCAGTGAGAAGGATGACCTGAAAAGGGCAGAGAACATGCTTCAGCAGGCTGACAGGCTGGGCTGTCGACAGTTTGTCACCCCAGCCGACGTCGTCGCCGGCAACCCCAAACTCAACCTGGCCTTTGTGGCCAATCTCTTCAACAAGTACCCATCTCTCACCAAGCCTGAGGGAGAGGACATCGACTGGGGGATGCTGGAAGGTGAGACACGAGAAGAAAGAACATTCCGGAACTGGATGAATTCCCTGGGTGTAAACCCACATGTCAATCATCTGTATGGAGACCTAGCGGACGCCTTGGTCATCCTCCAACTTTATGAAAAGATCAAAGTGCCCGTCGACTGGACCAACAAAGTCAACAAACCACCATATCCCAAGATTGGTACCAACATGAAAAAGTTGGAGAACTGCAACTATGCGGTGGAGCTGGGGAAGACGACGGCGAAGTTCTCTCTCGTTGGCATCGGTGGGCAGGACCTGAACGATGGCAATGCCACCCTGACGCTAGCCCTGGTGTGGCAGCTGATGAGGAGATATACGCTGAATGTACTGGAGGACTTAGGAGATGGACAAAAAGCTAATGATGACATCATTGTTAAATGGGTCAATACAACCTTGTCAGAGGCAGGGAAAACAACCAAGATCTCAAGCTTCAAGGACAAGGAGATCAGCACCAGTTTACCAGTAGTGGACCTGATTGAtgccatccaacctggaagcatCAGCTACGACCTGGTCAAGACTGGTAGCCTCTCAGCCGAGGACAAGCTGGAGAACGCCAAATATGCCGTCTCCATGGCGAGGAAGATCGGCGCGCGTGTCTACGCTCTCCCAGACGACCTGGTGGAGGTCAAGCCCAAGATGGTGATGACCGTGTTCGCCTGCTTGATGGGCCGGGGGATGAAGAGGGCTTAACGGACTGGTTGTGCTACTTTGGCATTCCAACACAACTACCCACAAGCCTTTTGCTTTATTAAGGGCCACCCGGGAATGAAGAAAGACATGTGGAAGAAAATTGTTACCAATAgacatttagttttttttccccccaatcGGTTTTGTGCTTTTTTCACGTGtgtgtggtacattttcacaacttttttgtacaaaactctaaacacagCATCATGATATCTTCTCAACTTAGTTATTTTAACAACCAGTTAATCCATTAGCAAACATGCAAGATACATGTTTCAAAATTGCCCTTTAAATGTAGTATGCTACAGCACTGTAAATTACAGCACATTACACTGTTTTCACATTAGGGAATACACTTACACTACCCATCAACATTTACTGAAAATCAAATTTATATCCCATGTGTGTTCATTCTTTCAGTCATTGATGCAAAATATACATTTATTGTTCAGATATAATTACACTAGGTGTACTGTAATCAAATGAAACAAATTAAATGAATGAAAGAAACATAATGTTTAGCAGGCACGAGTTTGCATCAAGCCAGTTTTAAACAGTTGACCATAGGTTCTCATCAACACAGTAAATGTCCTCATTGTTCATGCACCTGGGGGAAAGACCTGTTGACATGGTGAATCCAAGCCTGACATAGATCTGGATTGATGTCATTGCATGCCTCATTCATGGCCTGAAGGAGGGTGGCACACTCATGGGGATGGCAATCATACACCTTCCACCTGTATTATAATATTGTATTGTACTTATGTGTTCTATTGGCCCTATGTGGCTCAGTAAGAGCATGGCACTAGCAACACCGCAGAGTTTTTGGTTCAATTCTTACTGGGGTCACAGGAAAATGTGTTGACTCACTGTTgccactttggataaaagtgcctGCTCTACATAAATGGCATATTATGAATTAGTATTGTATTGACCAATGCAATTATAGTAGAGCAGTGTAACCCCTCCCCCCAATCAAAAAGACACCTGTAATTTTGGGTACATGTTCAGGGTAGTGGTGAGCAACATACGGCCTGTGGGAAATAATGGACCCTTTTCTGGCCGGCAAATAGCTTTCGACAAAAAAATAGGTTCTGGGGGGAAAATCTGCGGCATTCcgctgaatttaaaaaaataaaaataatctcaaTATGGCCCTCGAGACAATTATTTAGGGGATTCAATTGTTACAAACAGTACATATCTGGTCTTGTATATCTGTTTTTTTACTTACTGTGAAGTAAAATAAAGGGTCACCATCAtaatatatttaagcaataaggcattaacaggtgtggtatatggccagtataccacagctaagggctgttcttatgcacaactcATCGCGGAGGGCCTGGACACAGCccctagccgtggtatattggccaaataccacaaaccccgaggtgccttgttgctattataaactggttaccaacgtattTTAGAGCAGTAACAATAAATGTTTTTTCATACTTGTGGTATGCGGTCtgataccacggctgtcagccaatcaacattcagggctcgaaccacccagtttataatacattATATATCATACTTAATGTTCATACTTTACAAACATTTTCATGGTGTAGTTCTCAATCTGTAGTAGACAAACCAGTTTAACATCTACAGGTTTACCAAATGGTTAAGTGATTATCAATTGAGACCATTCGGATTAGGTAAGAGTAAAAAATACAATCATATCAAAAGTAACGTGAGCATTGTATTGTGAAAAGAATTTACTTTATTTGAACGTATTGCAATGTAAGACTTATTtatttctagatgaaacactgaTTTAAGTTTTATGAAAAGGTGAATGTGTGTTGTACTTAGTCAATTGAATTTGTGTGTAGTTTAGAAACTGCCTTTTTGATCATCTGTTTTGTACTAAGTGTTGTGAAAATGTatcacatacttgtgaaaattgcaccaaAGTGATTGAAAAAAAACTAACACTCTGCAATCAAAAACCTAAAATTTCAACCTTGTTTTGAACGGAGGTATGTATACTACAGAATATTGTGCAGTCTTATTTGCGGTAAGCCCATAACATAAAGTTACTGAAGAACACTATGCCTCATGTTACAGAGGACAACTTCCTATGTTACTTTTCGATATGCAACACTATCTCAATTCATGTTTCAGAATGCTGTATGGTATAAGTATGTATGTATTTTTCCAGTTAACAGGTTGTGTTTCTGAGTAGTTCTACTCCGGTTGATTATGTTACAATTATATCCTTGATgtgtacactatataatacataATCATATCATCCCTTACACAGTGGATAACAATATTTAActtggacaaactgaaatggtggCGGTTTAGGTGTTGCACCTGAACTTTCTCCTCTCCCTTATTGAAATGCATGCATATCTTAATAGCTAGTCTTGTCAACAGCTGCATATCTACGGAAGCCATAAGGTCAAACCTTAGTAATGACCAAACCTGAAGGGTATTCTCTGTATTCCTGTATTTACTTTATTTTTGGGGGGATTATGGTAGATAGCTAGTAAACTGAGAGCAGCTGGGTGTCTGTCTGGCTTTTTTCTATTGTGCTATTTGTATGTCTTATTACTCTGGAAGAAACCAAGGGAGCTCACTTGACAGTTCGGTTTCCCTGGTTGTGCAGTATCTTTTAATGCCAATTTCTGATGCGCATTTGTTTCCTCTTTTCTTTTGTAGTCAACATTACCAAAAAAATAGGCTAAACTATTTCTGCCTTGCAGATAGCTTCATTATATTCCATAGTTACCGTACCATTGCATTTTGGTCTCATGTGTACATGTTTACTCTGAAGTGCTTTATACAAATAATAAATAAGAAAATGAACAATG

Function

NR:

description
plastin-3

GO: NA

KEGG:

id description
K17336 PLS3; plastin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618337.2 True 4935 mRNA 0.43 16 37259490 37277036

Neighbor

gene id symbol gene type direction distance location
LOC110533802 bhmg1 coding upstream 117017 37135196 ~ 37142473 (+)
ppm1nb ppm1n coding upstream 146549 37100645 ~ 37112941 (+)
nectin3b LOC106603344 coding upstream 189070 37000940 ~ 37070420 (+)
diablob LOC106603345 coding upstream 262261 36988652 ~ 36997229 (+)
LOC110533794 ppme1 coding upstream 303718 36932249 ~ 36955772 (+)
cnga2b cnga2 coding downstream 11999 37289035 ~ 37292481 (+)
nup62l LOC106603332 coding downstream 37879 37314915 ~ 37320614 (+)
LOC110533815 LOC106603329 coding downstream 76890 37353926 ~ 37359996 (+)
LOC110533818 LOC106603326 coding downstream 127311 37404347 ~ 37417371 (+)
LOC110533820 LOC106603324 coding downstream 142057 37419093 ~ 37478728 (+)
G884213 NA non-coding upstream 6931 37252334 ~ 37252559 (+)
G884113 NA non-coding upstream 85978 37172624 ~ 37173512 (+)
G884064 NA non-coding upstream 167836 37089562 ~ 37091654 (+)
G884006 NA non-coding upstream 263160 36926546 ~ 36996330 (+)
G884004 NA non-coding upstream 336655 36922483 ~ 36922835 (+)
G884242 NA non-coding downstream 21658 37298694 ~ 37298919 (+)
G884261 NA non-coding downstream 49949 37326985 ~ 37327209 (+)
G884210 NA non-coding downstream 50917 37327953 ~ 37328189 (+)
G884263 NA non-coding downstream 52497 37329533 ~ 37329836 (+)
G884266 NA non-coding downstream 58248 37335284 ~ 37335671 (+)
G883966 NA other upstream 408337 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 457905 36799376 ~ 36801589 (+)
G883473 om-i other upstream 963943 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 1572917 35674201 ~ 35686573 (+)
G882624 NA other upstream 1843252 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 1478473 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 4435291 41712327 ~ 41717292 (+)
G890228 NA other downstream 4801179 42078215 ~ 42154093 (+)
G891133 NA other downstream 5705646 42982682 ~ 43109676 (+)
G891188 NA other downstream 5819684 43096720 ~ 43097617 (+)

Expression


Co-expression Network