chmp1b (LOC106603331)


Basic Information

Item Value
gene id chmp1b
gene name LOC106603331
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37348472 ~ 37351594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618341.2
GTGACCGTGACGTATTTATATTTGGGTAGTGTAGCCGGAAGTATCAAGGAGAGGAATATCTGAAGAAGAAAAGCTTTTGCATTACGTCTAAATCGAGAAGAAAACAATAAAAATACATTCATTCTCGGACCATCAAGGAGCCTACCAGCATGTCGAATATGGAGAAGCATCTCTTTAATCTCAAGTTTGCAGCCAAAGAACTGCAAAGAAGCTCTAAGAAATGTGACAAAGAGGAAAAGGCAGAGAAGGCCAAAGTCAAAAAAGCTATCCAAAAAGGAAATGTGGAAGTGGCACGGATCCATGCGGAAAACGCCATCAGACAGAAGAACCAGTCGGTCAACTTCCTAAGGATGAGTGCTAGGATTGATGCAGTGGCCGCCAGGGTCCAAACAGCAGTCACAATGAACAAGGTCACTAAATCTATGGCTGGAGTGGTGAAAGGCATGGATGCCACACTGAAGAGTATGAACCTGGAGAAGATCTCTGGGCTCATGGACAAGTTTGAGCATCAATTTGAGACGTTAGATGTACAGACCGCTCAAATGGAGGACACCATGAGTAGCACAACCACACTAACCACCCCACAGAATCAAGTGGATTCACTAATGCACGAATTGGCTGATGAAGCAGGGTTGGACCTGAACATGGAACTCCCACAGGGACAGACTGGATCAGTGGGCACCAGTGTAGCGTCAGCAGAGCAGGATGAGCTGTCTTCAAGGCTTGCCAAACTCCGAGACCAAATGTAAAGGAAGAACTCAGTCTGAGACCTCAAGTGCAGAGCTTCAGGTTACAAGACCTGCTCTGTTCTTTTCATAATGTCTTCGTCTCACTCCTTTAGTTTTTCTCTTTGATGATCCTACTGTATCCTGTTTGAGAGGCTTGCCCTTGGGTCCTTATTGGTGTTCTTAATTTACTGTTGTATATAGAGTATCAAGTTACAGGAATATTAGCCACCCGCCTACGAACACTAAAGCAAAGACTTACTGGTTATGGAAAATGAATTCAATCTTtgaaataatatatattataactGGGATGGTTGCGTCTGCGACTGATGCTTTTTGTACGtccatttttttgtgtgtagtaGTTTGGCAGGCCTCTTGTCTTAAGAGGAAACTGCAATGTTATATTTGTTTCTTTCTGGTGTCCCTCCTTTTTAGACATTTTCTCATACAATAATTTATTCACGTAAAATATGTTTCAAAAATCTCATATCCTGTATCAGAACGGCATTGTTTTAAGGAGAGTTTGGTTGGTTGATTCTTACATTTGATTGATAACTGAGTCTTTGGATGTCATTTTTTGTCCACCCTGATTAGGTTATTAGATAATACAATTTTATAACACTTTTAA

Function

NR:

description
PREDICTED: charged multivesicular body protein 1b

GO: NA

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618341.2 True 1359 mRNA 0.41 8 37348472 37351594

Neighbor

gene id symbol gene type direction distance location
LOC110533809 LOC106603335 coding downstream 100019 37202094 ~ 37248453 (-)
LOC110533810 NA coding downstream 104188 37243492 ~ 37244284 (-)
LOC110533808 LOC106603409 coding downstream 153016 37193113 ~ 37195456 (-)
LOC110533807 LOC106603336 coding downstream 163458 37178008 ~ 37185014 (-)
itpkca LOC106603337 coding downstream 171672 37157662 ~ 37176800 (-)
LOC110533816 LOC106603328 coding upstream 10595 37362189 ~ 37395821 (-)
LOC110533817 LOC105026967 coding upstream 48201 37399405 ~ 37402750 (-)
LOC110533823 LOC106603321 coding upstream 166502 37518096 ~ 37704039 (-)
LOC110533824 LOC106603320 coding upstream 491940 37843534 ~ 37867857 (-)
LOC110533826 LOC106603319 coding upstream 547480 37899074 ~ 37926052 (-)
G884750 NA non-coding downstream 4592 37343408 ~ 37343880 (-)
G884749 NA non-coding downstream 5969 37342272 ~ 37342503 (-)
G884735 NA non-coding downstream 27929 37319799 ~ 37320543 (-)
G884728 NA non-coding downstream 42078 37306164 ~ 37306394 (-)
G884725 NA non-coding downstream 47349 37300772 ~ 37301123 (-)
G884764 NA non-coding upstream 52012 37403606 ~ 37403856 (-)
G884806 NA non-coding upstream 110095 37461689 ~ 37464531 (-)
G884983 NA non-coding upstream 139601 37491195 ~ 37491655 (-)
G884981 NA non-coding upstream 144500 37496094 ~ 37496739 (-)
G884736 NA other downstream 29608 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 683115 36652707 ~ 36665717 (-)
G883754 NA other downstream 955945 36391103 ~ 36392527 (-)
G883753 NA other downstream 957558 36389997 ~ 36390914 (-)
G883128 NA other downstream 1467521 35880524 ~ 35880951 (-)
G885767 NA other upstream 887356 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 1832104 39183698 ~ 39185578 (-)
G887329 NA other upstream 1865719 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 2503372 39843126 ~ 39893728 (-)

Expression


Co-expression Network