LOC110533815 (LOC106603329)


Basic Information

Item Value
gene id LOC110533815
gene name LOC106603329
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37353926 ~ 37359996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618343.2
AGATAGATAATCCCATAATGAACAAACAGAGCTTCGTGAGTTACCTTAAAGTCGTGACGCCAGATTGCCATGGAAACTAGACTACGCTCGCAGCTGAGAGAAAACAGTGCGCTGTAGAACTTCAGTTTGTTTCCTTAAGCGCCACTGTCGTGTTGGGTTGGACAGCGATCAAGAACGAACCTACATCTTCTAAAGATAATAGCGCATTGTGCACGGTGTCTACGGGTCGGAGATCCCAATTTAACCTGTTGGATATCACTTATTGTTGTTTTGCTTACTATACTTTGGCTAAGTTCTACCCTTTCCTCAGCAGTCAGTTAAACCCAAGATAATTGATCTCCAAATGGATAGAAGATTCCACAACTTGACTCTGGAGCAAGTCCAGACTCTGGACCAGGTGTTGACAGAGGTGATCCCCATCCACGGCAGAGGGAACTTCCCAACCCTGGAGGTGAGACCCAAGGACATCATCCACGTAGTGAAGGACCGGCTGTTGGAGAGGGAGATCAGGGTCAGGGACATCCGCCTCAATGGCTCCACCGCCAGCCATGTGATGGTCAGGGACAATGGCACGGGCTACAGAGACCTGGACATCATCTTTGGAGTGGAGCTGCCCAGACAGGAGGACTTCCAGGTCATCAAGGAGGTGGTGCTGGGCAGCCTGCGTGACCTCCTTCCCCGTGGGGTTAACAGACGCAAGATCACCTGCCTCACCATGAAGGAGGCCTATGTGCAGAAGATGGTAAAGGTTTTCAATGAGCACGACCGCTGGAGCCTTATCTCACTGTCCAATAACAGGGGTAAAACAGTGGGGCTCAGGTTTGTAAGTTCCCTGCGACGCCAGTTTGAGTTCAGTGTGGACTCCTTCCAGATTATATTGGACCGTATGCTGGAGTCAtactgggagactgagaggagGCAAGGAGTTCAGTGTGAGGGATTGGAGTCACACAATGGCATTGtgttacatccagatagaggggCAGAGAAAGCCATAATGGTACCCCAGTATTCTTCCACCTCTGAGAATCTAAAAGAGGATAAAGACAAAGATCCAATGATGACTCGCGTCGCTGACAGTCCGTGCCACAGTGAACAGGTTGTTGTTCAAGAGGAAGAATCATCACATCCAATGAATGTGCATGCAACTGGAAAACAAGAGCCACTGGAAGTGTTAGAGAGAGCAGAGCTAGACCTGGGGACTCTGGAGAATGAGGAagaggtagaagaggaggggGTGGTAAAGGTTGATACAGTACTTGAGATAAGAGTAGAGGAAAAAATGCCATTTGTTCAGAATACAGATTATCCCTCACTTATATCCTCCTCCAAAATATTGACAGACGTGATGGAACCTCTGGTGTCAAATATATCTGTAAACCCTCAAAGTAACATAGAGGAGTCACTGATCTCTGAGTCAAAAGACATCAAGCCATCCCCAGTGTTGCTCACAGAGAACTCAGTGCAAGAGCAACTTCAAGTGATGCCTCAATCCACATCCCAAGCCTGCACTGCTGTCACACAAAACGTACATCTTGAACATTTATTCCCTCCGCCAGCCAAGAAAACCTGTAACACATCCCAGGGAATTGTCCCTGACTATTGCCCCTCACCTAAACCACCAAGGAAGATGTCACGGAAGATGAGCAGCATCTCATCACTCCCTGAAAAATGGTCTTTATTAAAAGATTTGTCAGATCTGACAACACAGCTGTTTGAGCCTATAGAAATACTTCCAACACCTCAACCAAATCACTCTTTATTAGACACTGATCAAGGCCATTATTCATCCTCCTCAGGGTCCAGACAGAGGAACTCAGAGGGCACTAAAACATTCACAGACCACCTTACTCCAGCCGTTTCATCCCAGGATAAAAACATCTCACCCCGTACCGTAGAACAAATAGTCAGGGTGAAATATTCAAAAAAGCCTCCAGATTCAGAAGCTTCTGAGGAATCATTGTCCCTTCAAACAACAGGGAACCAAGTCCCAGAGACTGAACCTGCTGCTACTCAGGAACTAGCGCCACCAGAGACAACCACGGTCTGTCCACGGGCAGGGGCAAGTTCGGCCCCAAGGGACAAGGCCAGCATCACTGTGGTAGCAGAGTGCATGTATGGGGACTTTGAGCAAGCCATGGATCATCTGCGTTTCCGACTGATTGCCACCCATAACCCAGAGGAGATCAGAGGAGGTGGGCTTCTGAAGTATAGTGACCTGCTCGTGAGGAACTTCAGGCCAGCCAGCGAGACAGAGATCAAGTCCCTAGAGCGCTACATGTGCTCCCGCTTCTTTATTGACTTTCCTGATGTTAGCGAGCAGCAGCGCAAGATCGAGGCCTACCTGCGCTGCCACTTTGTTGGCGACGAGGAGACTAGCAAGTATGACTATCTGATGACCTTGCGTCGGGTGATAGATGAGAGTACAGTGTGTCTGATGGGAcatgagaggagacagacactcaATATGATCACTGTCCTGGCCCTGAGGGTACTGGGGGAACAGAACGCCATCCCCAACACTGCCAACGTCACCTGCTTCTACCAGCCTGCGCCATACATGGCTGACCCCATATTCAGCAGCTACTACATTCCCCAGGCAGCACAGCCACCTCTGCTTTACCACCCCTACCCTTTACATGTCCACATGCAGACCGGCCTGGTGTAGCCCCAGCATGTGAGTGGGGGAGAGCATGCGGGCTGCATTCTATATGGTTCTACTCTGTAACCAGAGGCAcaaaattgattttaaaaagaAGAGGCATGAGCGCAATTTGTTCAATGCTTTGAAAAGACGCTGCCTATGACGTGAGACAGCGGACACAAAATGGGGAGAGTTGGAGCTTTATCTTTGGATAAAGGCCACCACGTCACTCTTTTCAAATGAAAAATGTTTTGATTGAGAGAGAATAGCTGATTACTCACTGAGAGCAAGCTGCAAGGGAAAATGTCACAGAGGGAAATGACAGTTTACGTGGCTGTTTCAGCTGCAGCAGCAGGCTAGGCTTTGTCTTTGTTACCTTCCTGTGACGCGGGGATCCTGTACTGTCAATTAATGACAAAGTTGTTCAAACATGACAGAAATACTGTATGAACAGTTGACTGAGCGTTTCTTATCATATACTATAGTGAGGTAGAGGACGGGCAAGTATGCTGCAGTGGATGAAGGTATAAACACTTCAAAATAATTAGACATACCATAGTTGATTTAGACAAAAATCACAAGACATTATGTTGAAATTAGACAGTATCTGATCAAGCCAAAAAACTGCGCTGTGTTTTAGAGAGAACCTGATGAGTTGTTCTTCACGAATGTAAGTGAATTAACTTTCTTGAAGTGATCACACTTgtgtttaaaggtagactcagcaaaaTGACGTTGCCACGAGCAACACCACagggacagcaggtagcctagtggttagagcgttgggccagtaactgaaaggttgctggatcgattccctgagttgacaaggtagaaagaaatctgtcattctgcccctgaacaaggcagttaacccattgttccctggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctatttaaataaaggttcaatttaaaacatTGTCCCCAAAAACTATTGAGATGCAAgaccagtcacacacagtatctgcacaGGTGTGCTTTAAGCTGTTCACAGCATTGTAGCCAGGGCACTGAAAAACCAGAGAAGTTGAGCCTCGCGCTTTAACGCTCTTAGTTCTTGcgggaaattgacccactatgctgtcaTATCGCTGAATCTACCTTTAATATTGTATTGTAACGTCACAAATCTTGATATGACATCATCAGCTGTGCTTAGATCTTGGGGAAATGTGGCGTAGAGTACATATTGATTTGTTTTCTGGGTGTTAATGTCTGACTGCATCCTTGGTAAATGTTTGAGTGTCTAATGAGTGACTACATGAATTTCAGGGCGAAATCAGGGTTAAGATAAGACAGATTCCAAAGTGTTTTAAACTATCACCCCTCAGTTTCGTTATGTGGTAGTATTTAGAAGTAAGATTTAGAGATCTAAATTGTAACTGTGAGACAGAATGACACTCACACCAAACATAGATTCACTGTTACTTATTTATGTGTGCCATTTCATTGTAAAAGACACCCAAGAGgtcatatgtaaaaaaaaataaaaaaataaataaaaaaaaaaatagaaaaagtgTATTTTCAGCACAGGCGTGGCAGTAGGTGAGTTCCCTAACGGGCAATTGAATCTGAAGCACAATGTAAACGTACGCAACCTTGTTGTTAATTAGTGAACTATAGATGTATCGGATGTATGTGTGATTCACCAATTCAATATAGATGAAAGTCTAATGTAAATGTAACTGTGCAGTAATCTGGTACTTCTCATAAACCATAGCGTTGATTGTAAATTGTAATACAGTAATCTATGTTGGGATTCTTTAGGTATAATCATTTTGTCTCATTATCGGAACTTTATCTGGAGCTACTGTCATGTATCGGTAGAGAAACATCATGCATTTTCATGATCTCTGTATCCCCATTCATATTCAAATATTTGCTCAATTTGTATGGTCATTTTGATAATAAACCTCATGCATTTAAACAT

Function

NR:

description
uncharacterized protein LOC110533815

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618343.2 True 4623 mRNA 0.45 2 37353926 37359996

Neighbor

gene id symbol gene type direction distance location
nup62l LOC106603332 coding upstream 33312 37314915 ~ 37320614 (+)
cnga2b cnga2 coding upstream 61445 37289035 ~ 37292481 (+)
LOC110533811 LOC106603334 coding upstream 76890 37259490 ~ 37277036 (+)
LOC110533802 bhmg1 coding upstream 211453 37135196 ~ 37142473 (+)
ppm1nb ppm1n coding upstream 240985 37100645 ~ 37112941 (+)
LOC110533818 LOC106603326 coding downstream 44351 37404347 ~ 37417371 (+)
LOC110533820 LOC106603324 coding downstream 59097 37419093 ~ 37478728 (+)
LOC110533821 LOC106603323 coding downstream 118925 37478921 ~ 37497546 (+)
agtr2 agtr2 coding downstream 137026 37497022 ~ 37518509 (+)
LOC118966772 NA coding downstream 344053 37704049 ~ 37710683 (+)
G884271 NA non-coding upstream 10046 37343426 ~ 37343880 (+)
G884266 NA non-coding upstream 18255 37335284 ~ 37335671 (+)
G884263 NA non-coding upstream 24090 37329533 ~ 37329836 (+)
G884210 NA non-coding upstream 25737 37327953 ~ 37328189 (+)
G884261 NA non-coding upstream 26717 37326985 ~ 37327209 (+)
G884287 LOC106603328 non-coding downstream 2215 37362211 ~ 37365265 (+)
G884828 LOC106603321 non-coding downstream 163089 37523085 ~ 37525037 (+)
G884830 LOC106603321 non-coding downstream 167631 37527627 ~ 37528005 (+)
G884829 LOC106603321 non-coding downstream 168155 37528151 ~ 37528428 (+)
G884832 LOC106603321 non-coding downstream 170447 37530443 ~ 37530677 (+)
G883966 NA other upstream 502773 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 552341 36799376 ~ 36801589 (+)
G883473 om-i other upstream 1058379 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 1667353 35674201 ~ 35686573 (+)
G882624 NA other upstream 1937688 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 1395513 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 4352331 41712327 ~ 41717292 (+)
G890228 NA other downstream 4718219 42078215 ~ 42154093 (+)
G891133 NA other downstream 5622686 42982682 ~ 43109676 (+)
G891188 NA other downstream 5736724 43096720 ~ 43097617 (+)

Expression


Co-expression Network