LOC110533817 (LOC105026967)


Basic Information

Item Value
gene id LOC110533817
gene name LOC105026967
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37399405 ~ 37402750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053658.1
ATTTAACCGCACCTATCCCCACCCCCATCCAACCACTGGGTTTAATGTGCTATATAtatgtttactacagtattagTAATAAGAGAACATCACTCTCTACAAACTGTGAACTCAATCACAAAATATAGGTCTTTAGTTTAATTGAAGAAGAGAACCTACATTCCAACATGCCCAAGAGAAAGGGAGCTGATGGCGATGTCAATGAGGAGCCTTCAAGGAGATCTGCACGGTTGTCATCGAAACCAGTACCTTCAAAACCATCACCAAATCCAAAAAAGCCAGCTAAGAAAGAAAAATAAGTAAATAACAAGAAGAAGGCGAAGGCAGCAGCGGTCGAGGAGCCTAAAGAGGAGACCCAGACTGAAAATGGCGAGATCAAGACAGATGAAGTAGAGACTCCAGAAGAGAAGACTGAGTAGCACTACTCCCGTCCATCCAATCCCCTCCCTTGTATGGCCCCCAAGTCTCATATGTTATCCCTAAAACATCCATTACCTTAACAGAGGAATATTTTTATCAACAATTTTGTAATTATTGGTACAGGGTTTTAGCTCAAAACACAGCTAAATATGGAGGACTGTTCTGTTGTGCAGTGGTCATAAAGTGTTTTTAAGAAAACATAATTACGGTTttgtttatttcatagttttggtacCTTGTTGGGACTTTAAAAAATAATGCTGGATGGCAGACTAATTGCAGGTGGTATAGTGTCACATTGTAGGTTCACCAACTCATAACATTTCACTTTTGTAGGTGGTTGTATTTTTACCCTTTATGTACAGTGTTTTTTCTTTGGGAGGTGTTTACTTATTTTCAACTTGATTGTCTGTAAGCAATCTTGGAAACATTTAAACATTCCAGGCTTAAAGGACAATTTCACAatttttcaacttcatattcataatCTCGAGGACCACTGCAACAACATGTGAAAATTGCaaatttgttttgttaaaaaatagGAATATTTTCAATGACACCATCAGTGTGCATGGTGTGATTTTAACAAATTAGTTACCATCATTAGCTACTAATTGGACACTTCCTCAGTTTTTTTATCACAAAACATAGAAACCccacattttcacatatgttgatgttgtgcTGGAGATTAAGcagaacattttttaaatttcactaaTGTGGGCATACCTGCTTTTTAAATAAACTTGCTCTTAATTATTTTAACACAAATGATTTAAACAGAGGAAGAGGCTTGTTGGAAGTTGATTATACTTTTTGAAACAAATGTTGGGATTTTAACACGGAAAATTAATCTATTGAAATATGCAGCTGTGTTCCCACTGAAGTTCTGGATATTTAATTGGAATTTAATAAAATAGTAATTTCTCATGAGGTTGCGCAAGGTC
>TU1006598
CCCATCCAACCACTGGGTTTAATGTGCTATATAtatgtttactacagtattagTAATAAGAGAACATCACTCTCTACAAACTGTGAACTCAATCACAAAATATAGGTCTTTAGTTTAATTGAAGAAGAGAACCTACATTCCAACATGCCCAAGAGAAAGGGAGCTGATGGCGATGTCAATGAGGAGCCTTCAAGGAGATCTGCACGGTTGTCATCGAAACCAGTACCTTCAAAACCATCACCAAATCCAAAAAAGCCAGCTAAGAAAGAAAAATAAGTAAATAACAAGAAGAAGGCGAAGGCAGCAGCGGTCGAGGAGCCTAAAGAGGAGACCCAGACTGAAAATGGCGAGATCAAGACAGATGAAGTAGAGACTCCAGAAGAGAAGACTGAGTAGCACTACTCCCGTCCATCCAATCCCCTCCCTTGTATGGCCCCCAAGTCTCATATGTTATCCCTAAAACATCCATTACCTTAACAGAGGAATATTTTTATCAACAATTTTGTAATTATTGGTACAGGGTTTTAGCTCAAAACACAGCTAAATATGGAGGACTGTTCTGTTGTGCAGTGGTCATAAAGTGTTTTTAAGAAAACATAATTACGGTTttgtttatttcatagttttggtacCTTGTTGGGACTTTAAAAAATAATGCTGGATGGCAGACTAATTGCAGGTGGTATAGTGTCACATTGTAGGTTCACCAACTCATAACATTTCACTTTTGTAGGTGGTTGTATTTTTACCCTTTATGTACAGTGTTTTTTCTTTGGGAGGTGTTTACTTATTTTCAACTTGATTGTCTGTAAGCAATCTTGGAAACATTTAAACATTCCAGGCTTAAAGGACAATTTCACAatttttcaacttcatattcataatCTCGAGGACCACTGCAACAACATGTGAAAATTGCaaatttgttttgttaaaaaatagGAATATTTTCAATGACACCATCAGTGTGCATGGTGTGATTTTAACAAATTAGTTACCATCATTAGCTACTAATTGGACACTTCCTCAGTTTTTTTATCACAAAACATAGAAACCccacattttcacatatgttgatgttgtgcTGGAGATTAAGcagaacattttttaaatttcactaaTGTGGGCATACCTGCTTTTTAAATAAACTTGCTCTTAATTATTTTAACACAAATGATTTAAACAGAGGAAGAGGCTTGTTGGAAGTTGATTATACTTTTTGAAACAAATGTTGGGATTTTAACACGGAAAATTAATCTATTGAAATATGCAGCTGTGTTCCCACTGAAGTTCTGGATATTTAATTGGAATTTAATAAAATAGTAATTTCTCATGAGGTTGCGCAAGGTCTCATGACTTTACTTGTCATTATTACTGTATCATTACCATATCTAAACTCAATAGTAGACCATCTAGCCAACCAGTTGTTCTGATTGTTATTGTGGTATGTATATTATTGTAATACTGATATAGTTAACATTCTTATAACAGATTGTGGTCAAAGGTAGCATTTTACAACCTACTGGATTTGGCGACATGTCGCAGTCACTATTTGCTGACCAAAATAAAAAATGAGACTGAAAGGACCCTAGGTATCGTGCCAGCACAAATAACCACAAAGACATTATCTGTCTTGCAAAAGCATGACACTTTTCAGTTCTATACATTATGATTGTTTGACATGCAAATTTGTAATCATGCTCCAACTAGTAGTTTATGGTAAGTTTTGTGCTTGTCTGA
>TU1006597
CCCATCCAACCACTGGGTTTAATGTGCTATATAtatgtttactacagtattagTAATAAGAGAACATCACTCTCTACAAACTGTGAACTCAATCACAAAATATAGGTCTTTAGTTTAATTGAAGAAGAGAACCTACATTCCAACATGCCCAAGAGAAAGGGAGCTGATGGCGATGTCAATGAGGAGCCTTCAAGGAGATCTGCACGGTTGTCATCGAAACCAGTACCTTCAAAACCATCACCAAATCCAAAAAAGCCAGCTAAGAAAGAAAAATAAGTAAATAACAAGAAGAAGGCGAAGGCAGCAGCGGTCGAGGAGCCTAAAGAGGAGACCCAGACTGAAAATGGCGAGATCAAGACAGATGAAGTAGAGACTCCAGAAGAGAAGACTGAGTAGCACTACTCCCGTCCATCCAATCCCCTCCCTTGTATGGCCCCCAAGTCTCATATGTTATCCCTAAAACATCCATTACCTTAACAGAGGAATATTTTTATCAACAATTTTGTAATTATTGGTACAGGGTTTTAGCTCAAAACACAGCTAAATATGGAGGACTGTTCTGTTGTGCAGTGGTCATAAAGTGTTTTTAAGAAAACATAATTACGGTTttgtttatttcatagttttggtacCTTGTTGGGACTTTAAAAAATAATGCTGGATGGCAGACTAATTGCAGGTGGTATAGTGTCACATTGTAGGTTCACCAACTCATAACATTTCACTTTTGTAGGTGGTTGTATTTTTACCCTTTATGTACAGTGTTTTTTCTTTGGGAGGTGTTTACTTATTTTCAACTTGATTGTCTGTAAGCAATCTTGGAAACATTTAAACATTCCAGGCTTAAAGGACAATTTCACAatttttcaacttcatattcataatCTCGAGGACCACTGCAACAACATGTGAAAATTGCaaatttgttttgttaaaaaatagGAATATTTTCAATGACACCATCAGTGTGCATGGTGTGATTTTAACAAATTAGTTACCATCATTAGCTACTAATTGGACACTTCCTCAGTTTTTTTATCACAAAACATAGAAACCccacattttcacatatgttgatgttgtgcTGGAGATTAAGcagaacattttttaaatttcactaaTGTGGGCATACCTGCTTTTTAAATAAACTTGCTCTTAATTATTTTAACACAAATGATTTAAACAGAGGAAGAGGCTTGTTGGAAGTTGATTATACTTTTTGAAACAAATGTTGGGATTTTAACACGGAAAATTAATCTATTGAAATATGCAGCTGTGTTCCCACTGAAGTTCTGGATATTTAATTGGAATTTAATAAAATAGTAATTTCTCATGAG

Function

NR:

description
non-histone chromosomal protein HMG-14A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053658.1 False 1373 mRNA 0.36 6 37399795 37402750
TU1006598 False 1740 lncRNA 0.35 6 37399405 37402727
TU1006597 True 1337 lncRNA 0.35 6 37399808 37402727

Neighbor

gene id symbol gene type direction distance location
LOC110533816 LOC106603328 coding downstream 3974 37362189 ~ 37395821 (-)
chmp1b LOC106603331 coding downstream 48201 37348472 ~ 37351594 (-)
LOC110533809 LOC106603335 coding downstream 151342 37202094 ~ 37248453 (-)
LOC110533810 NA coding downstream 155511 37243492 ~ 37244284 (-)
LOC110533808 LOC106603409 coding downstream 204339 37193113 ~ 37195456 (-)
LOC110533823 LOC106603321 coding upstream 115346 37518096 ~ 37704039 (-)
LOC110533824 LOC106603320 coding upstream 440784 37843534 ~ 37867857 (-)
LOC110533826 LOC106603319 coding upstream 496324 37899074 ~ 37926052 (-)
amer1 LOC106603317 coding upstream 536307 37939057 ~ 37943052 (-)
asb12a LOC106603316 coding upstream 542729 37945479 ~ 37947880 (-)
G884750 NA non-coding downstream 55915 37343408 ~ 37343880 (-)
G884749 NA non-coding downstream 57292 37342272 ~ 37342503 (-)
G884735 NA non-coding downstream 79252 37319799 ~ 37320543 (-)
G884728 NA non-coding downstream 93401 37306164 ~ 37306394 (-)
G884725 NA non-coding downstream 98672 37300772 ~ 37301123 (-)
G884764 NA non-coding upstream 856 37403606 ~ 37403856 (-)
G884806 NA non-coding upstream 58939 37461689 ~ 37464531 (-)
G884983 NA non-coding upstream 88445 37491195 ~ 37491655 (-)
G884981 NA non-coding upstream 93344 37496094 ~ 37496739 (-)
G884986 NA non-coding upstream 94518 37497268 ~ 37499542 (-)
G884736 NA other downstream 80931 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 734438 36652707 ~ 36665717 (-)
G883754 NA other downstream 1007268 36391103 ~ 36392527 (-)
G883753 NA other downstream 1008881 36389997 ~ 36390914 (-)
G883128 NA other downstream 1518844 35880524 ~ 35880951 (-)
G885767 NA other upstream 836200 38238950 ~ 38240559 (-)
rpl36a LOC106568029 other upstream 1780948 39183698 ~ 39185578 (-)
G887329 NA other upstream 1814563 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 2452216 39843126 ~ 39893728 (-)

Expression


Co-expression Network