LOC110533834 (LOC106603406)


Basic Information

Item Value
gene id LOC110533834
gene name LOC106603406
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38059762 ~ 38063313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990217.1
GCCACAGGCCAACATGGCAAGGTGTTTGTATCTCGGCTCCTTCCTTTTCACTAAGATAGTCAATACACCCCGTATCTCAATGAGAGTCAAAACTTGCCTCATTAAAACCTGGACCCCACACAGCCAAGGCAAAGCCATCACCATCCACTCGGCCATACACTCCGACTCTGAAAATAACAGCTTGTCGGAGGAAAAAGTCATAATACACTTTATTAACCAAGATGGCATCAGAACCACCACTGCTGTTACTGAAGGACAGACCCTGTTGGATGTTGTTGTAAACAAAAACTTGGACATAAGTGGTTTTGGTGCATGTGAGGGGACATTAGCATGCTCCACCTGTCATCTCATTTTTGACAAGACATTTTATGAGAAGATGGAACCAACGGTGGATGAGGAGATGGATATGCTAGATCTAGCTTACGGGCTTACCAAGACGTCCCGTCTTGGTTGCCAGGTGACAGTGCAGAAGTGGATGGATGGTATGACTGTCCAAGTGCCCCAAGAGGTGAGGGATGCTGTGGGATCTAAAGGCAACCAGTGATCCTTCATGCAACCTGCTAcacctctcacctactgtacCAAGTCTAATCATCATCATAATCAAACATCTCCAGAAACATATCACTcaggaccactctgacatgtATTTACCCTTTGCCCTACCAATCAACTAGCTTCTGTTGGAGAATCGGTTGTAGCAATTACATATTACCTGTACTTAGCATACAAAATGACCTAAAGTGGCATGCATTATAAATAGTAAGTTATTAAATGTTACAAACATTGCCTGTAGTTCAATGACATGTCACCTAGCATGCTGGCTTTATAAAAGGAAACCATTGGAAATATGGAAGCACATTAAAGTGGACCATCTTTATTCAGCAGTTCTCTgcaaagtgccttcagaaagtattcacactccttgactttttcctaaatgtgttgtgttacagcctgaatttaaaatggattaaattgagatgttatGTCACTGGCTTACACCCAATTCCCCAGAATGTCAAAGTGGCattatgttttttaaatttaaatttatacaaattaatacatttttaaaaagtgaaATGAGTCAATATGTTCTTCAAATcctttgttatgtcaagcctaaataagttcaggagtaaacatttgcttaccaagtcacataataagcagcatggactcactctgtgttcaataatagtgtttaacatgatttttgaatcactacctcatctttgtaccccacacatacaaaaaatctataaggtccctcagtcgagcagtgaatttcaaacacagattcaaccaaaaaaAACAGGGAGGTTTTTGAATGCCTAGCATTCtattagtagatgggtaaaaaaaacaaaaaacagacattgaatatccctttgagtatggtgaagttattaattacactggtgtatcaatacacccggttgctacaaagaaacacacgtcattcctaactcagttgccggagaggaaggaaactgctcagggatttcaccatggggtcaattgtgactttaaaacaattagagagtttaatggctgtgataggagaaaactgaggatggatgaaTAACATTCTAGTTACTCAACaaaactaacctaattgacaaacagaaaggaagcttgtacagaataaaaaatatccaAAATATGCATTCTGTTTGCGACAAattctaaagtaatactgtaaaacatgtggcaaagcaattaggtaaatgtgatatttctgtactTCATCGTCAATAAATGTTCAAAAATTAAAACAtgctttcactttgttattatggtgtattgtgtgtagatgggtgagaattattattatttttaattcctttttaatttaggctgtaacacaacaaaatgtggactaagtccaggggaatgaatactttctgaaggcactttctAAACCACATAAAATTCCCTTTAAGTAATTAAATCAACTGTGTTTTCATCCAACTACATTGTGTGAAATTTGACCCACTAATCTTTGTGCAAAACAATAAGTTGTTGCAATTAATAACCCTGCATATTTTAAATAGGATGTCTAGAAAGTTGGGACTGAGAAGGCATGGAAAAACACATGCAGAGAGTTTTGAGGGCAAACATGATTTATTATAGGTGGTGCAACAAACATAGGCATATACAGGTTTGTAGCAACGGATAATGTAATAACTGCCAATAATGTAACAGCTGCCCATAATGTAATACATTTTGCATTCATAATGTAAAAAATTACCAATAACCTAATAACGTTATATATCTAAAAAGCTTTTGTTACATTATGCATTGATGAATACATTATGGAGTGGGTAAAAGCTTTTTCATTAATAGTGTAATAACTTTAACCAATAATGTAATAACaactttaaaaataaatactaaaTCTATATTCACTCTTTTTCACGCATATCAAGTGTCATGTAATAGCTGACTACACACCAAACCACATTCCTGAGTCGTTATTTGATATTACTAAGGGAATGTAACCAGTGGGCTAATGTTGGAGAGCTCATATTCATGTTTCTCAACAGACATAAACAAACGGGCAGATTGTGGTATTTAAATCATGACACACTTAGATATTGCAGataatacagtcccaaaatgatGTCATATCTACCAGAACATGTAAAATGAAGCTGTGAGAGTAACTTTGTATTAAAACATTTCTTGTACTGGTTGACCTGAAAAAGAAAAATGTGTAACACTTCCATATGTGGCTCATAAGGGGACTGTAAAGGTAAATACATTAAAGTAGTGCAAAAAAACACA

Function

NR:

description
adrenodoxin-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K22071 FDX2; ferredoxin-2, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990217.1 True 2793 mRNA 0.36 4 38059762 38063313

Neighbor

gene id symbol gene type direction distance location
msna LOC106567791 coding upstream 20053 38002599 ~ 38039709 (+)
LOC110533830 LOC106603314 coding upstream 67103 37973339 ~ 37992661 (+)
LOC110533825 LOC106603318 coding upstream 163387 37876928 ~ 37896375 (+)
LOC118966772 NA coding upstream 349079 37704049 ~ 37710683 (+)
agtr2 agtr2 coding upstream 541253 37497022 ~ 37518509 (+)
LOC110533835 NA coding downstream 53841 38117154 ~ 38117987 (+)
ar-beta ar-beta coding downstream 115391 38178704 ~ 38230238 (+)
LOC110533839 LOC106603310 coding downstream 217025 38280338 ~ 38286660 (+)
LOC110533840 LOC106603308 coding downstream 247508 38310821 ~ 38336289 (+)
LOC110534919 NA coding downstream 670830 38734143 ~ 38743257 (+)
G885419 NA non-coding upstream 1737 38057747 ~ 38058025 (+)
G885381 NA non-coding upstream 4075 38001713 ~ 38055687 (+)
G885413 NA non-coding upstream 11698 38047379 ~ 38048064 (+)
G885379 NA non-coding upstream 59179 38000356 ~ 38000583 (+)
G885595 NA non-coding downstream 175421 38238734 ~ 38240280 (+)
G885657 LOC106603309 non-coding downstream 203975 38267288 ~ 38269588 (+)
G885668 NA non-coding downstream 226916 38290229 ~ 38290562 (+)
G885669 NA non-coding downstream 227413 38290726 ~ 38291023 (+)
G883966 NA other upstream 1208609 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1258177 36799376 ~ 36801589 (+)
G883473 om-i other upstream 1764215 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 2373189 35674201 ~ 35686573 (+)
G882624 NA other upstream 2643524 35414975 ~ 35416238 (+)
LOC110533845 LOC106603305 other downstream 692196 38755443 ~ 38815017 (+)
G889906 LOC106603262 other downstream 3649014 41712327 ~ 41717292 (+)
G890228 NA other downstream 4014902 42078215 ~ 42154093 (+)
G891133 NA other downstream 4919369 42982682 ~ 43109676 (+)
G891188 NA other downstream 5033407 43096720 ~ 43097617 (+)

Expression


Co-expression Network