LOC110533838 (LOC106603309)


Basic Information

Item Value
gene id LOC110533838
gene name LOC106603309
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38245016 ~ 38280006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618378.2
TGTGAAAGGAGGAGGTCCTTGGCAACACCGAACCAGATAGACACGAAAATACATTGAAACAAGAATCAGCTAACATTGTTTACCTAATGAATTAATGCGTCAAGGAACCAAAGAAGAGTCACTGTGTGCCACGGGTCCAAGGATTCGACAGCATTCAAATCTGGAGGAGTGGGCTACTCGAATTTCAATCTGGAAATGTTATCGACAATGTTCTGCACTGATTCTATGCATTAATTCAGATTTCTAACTTCAACATCTAGGCTACTGTACATCATTCCAAAAATAAGCAATGGGGCATCCTCCTCTTGAGTTCAGCGACTGCTATGAGGATAGTCCGGATTTTAGAGAAAGACTAAAATGCTATGAATTAGAATTGGAAAGAACAAGCAAATTTCTCAAAGATGTAATCAAAGACGGCAACAGTGTAATCAATGCAATCAAGGGTTATTCAGTGGCAGTGCAGAAGTTCTCCCAGACACTCGGTGTGTTCCAGTTTGACTTCATTGGTGATTCTCTGACAGATGATGAGATGAACATTGCGGAGTCTTTCCAGGAGTTTGCTGGTCTCCTACAGGAAGTGGAGGATGACAGGATGATGCTGGTTCAGAATGCTTGTGATCTGCTTATCAAGCCACTGGAGAAGTTTCGCAAGGAGCAAATAGGAGTGACAAAGGAAAGAAGGAAGAAgtttgagaaagagagtgaaaaatATTACACTCAGTTAGATAAACATCTGCATTTGTCTGCTAAGAAGAAGGAAACTCAGCTGCAGGAGGCTGACGAGCTGCTGGACAAAGAGAGGCGGAACTTCTATGAGTCGTCAGTGGAATATGTGTACCAGATCCAGCAGGTGCAGGACAGGAAGAAGTTTGATGTGGTGGAGCCTGTGCTGGCATTTCTTCACAGTATCCTGACACTCAACAACCTGACGGTGGAGATGACTCAGGACTTCATGCCCTATAAGCAAGAGCTGCAGCTCAGCTTGCAGAATACGCGGAACCACTTTGAGAGCACTCGTGAGGAGATAGAGGAGCTGATGAAGAGAATGACGCATCCAACCCAGATTGGTAAAATGCACAGCCAACCAGTCATTGAGGGCTACTTGTACTCTCAGGAGAAGTGGGCCTTGGGTGTGTCATGGGTGAAGTACTACTGTAAGTATCACAAAGACAGCAAGCTGTTTGTCATGGTCCCTGCTGAACCAAAACCTGCAACCAAACAGGGCCCCACAGAGCTGAAGCTTAAATCCTGCTTCCGCAGAAAGACAGAGTCCATAGACAAGCGCTTCTGCTTTGATATTGAAACTTACGAGAGAAACACACCTGTCACACTCCAGGCAGTTTCGGAGGCCAACAGGAAGTTGTGGATGGAGGCCATGTACGGAAAAGAGCCTATTTATCATTCCCCAATTCACAAGCAAGCTGAAATGGAATTGAATGAAGTTGGATTCAAGTTTGTGAGAAAATGCATCAACTTTGTTGAAACTAAAGGACTCACACAAGAAGGAGTCTACAGAACTGTTGGCAGCAACATCCAAGTCCAGAagcttttaaatgtattttttgaCCAGAAATGCCCAGGAGATGTGGATTTCCACAGCATTGACTGGGACATAAAAACCATAACCAGTGCCATGAAGTTTTATCTCAGGAGTCTAGCAGAGCCTCTGATGACCTACGGTCTCAACAGGGACCTCATCTTAGCAGCAAAATCGGATAATCTAGATGATCGACTGGGTGCAATCCACTGCCTGACGTACAAACTCCCAGGGAAGAATCGAGAAATGCTAAGCCTACTGATCCAACACCTGGTCAATGTCTGCGGTAACAGTGGGGACAACCTGATGACTCCCTCCAACATGGGTGTGATCTTTGGCCCCACCCTGATGAGGGCAAAAGAGGAGACTGTGGCAGCCATGTTGGATATAAAGTTCCAGAACATAGTTGTTGAGATTCTCATTGAGGACTATACCAAGATCTTCTGCAGCGCACCAGATGAGAGTTCCACAGCTCCACCGATGCCTCCTCCAAGGATCACCCCAAGGAAACGGCAACCAATCACCATCGCCAAGCGTCCGCTCCGCATCTGCCTAGCAGTTAATTGTGGCCAGCTCCAGAACACTGAGAATGAGCAGAATGGCAGCAGACCAGAGGGGGTGGATTTTGGCAGGGACACCCCAACGAgccccacacctctccaaaggACCAAACCCATCACCGCCCCTCTACGGCTCCATAGGGACACTCAAAGGCAGGCCCTCCTGCCCAAGCCATCCACCCGCCAGGACAGACACTCAGACTCTGACGTTGCCAAACTGGTCGCTAAGCTACAAGACGGAGGTCAGAGGCCAGATAGAGCAGCAACAGTcaatggtgagacaggagtcacTGTGAACCGAGCGCAGTCCTTCCAATGTAGGAGACCACCTCCTCGAAGTGTTGCAGTCATCAGAGAAGCAAAAAGTGACGGCATGATAAAACCGAGGTCTCTGGCTGAGAAGCCTGCCATCTGCAGACCTCCAACCAGACCCCCTGACCCCCCTAGCCGATACCCTGCACCCCACAAGAGCCCCACTGCAGCCCCCAGCGAGGACACCCCAGCGTCGTATGTTGCTTCCAAAGCCAAGTTTTTTGAGAATGCTTCAAGGCAATTTGGAAGCTCATCGGTCTCACCTCCAGCATCTACTTTACTCAATGTGAAAGAGGAGAATTTAAGTTGATGAGTCTGTTACCATGGCCTCTACTCCTGTCACTGACCTGTGGAATTGCAGTGAGCATCTGgacacatacagtactgtagtggaACAAAGGAAACAGAGTGCATTTTGTCCTGTCTGTGGACACCCTCCTGCTTGTTGCTATGAGGGACCCAATTAACATGTTGTTTAATTAGTGATAAAGGAGCTCCAATCTAGATATTAAAAACAATCTGTTTATTAAAGGAGGCCTGTATACGTCTCTGTCTGATCCAAATCTTGGAGATTCTGGCAGCTGGATCAATATTTATACATTCTATGGGATCAACCCAATAATGATGTAATTTAAACAAAAACAATTTACCTGTTAACTGAATGATGTAATGTTAACTAAATTAATCCTAGTCCAAGTGGCTAGTTCCAGTATACAGTTATTTGACTTTTAAACTGCTCGAAAACAAGCTACTGTAGCTCCCTAATACCATTTGGATTCACATacatgtaggctatactgtagtaCCCTACTGTAACAGGTTGAAATGAAAGCAAGCGACTCAGTTGTAGCACAATATTGTTAACTACTGTAGTATCTAATGCAAAACTGAGAGCCAAAGGTGCAGATTCTAAGTCTCAGTTGTTATTTTACTCCTGATGTTTAataatttgttacttttattttaaatgatttttttgtCAGACACTTTCTCTCTAACAGCATCTAACATAGTGTGACAGAGAGTGGATCATTATTCATtaattattatttgctatcatggTTGGTTAAGTAGGACTTTAACCTTAAGCTTAACCAAATGAATTATGGTATTCAGCACATCAGAATTCCTGTGGTCTGTTTTCAATCACCAAAGAGCATCATGAACAGGAGGAGTGTAGTCAACAGTCCTATCATATAactcaaatcaaataacattttatttgtcacgtgccaaaATCAgcagaccttacagtggaatgcttacttacaagcccttaaccaacaatgctttaagaagttaagaaccCTTAAAGCTGGAATCTCTAAATTCGTAGTGGTGAAACTGCCATGTTCATTtgtgatattacaacaacaaaaacacttcaacaaccaacactgttttttccccccttcGTACATCATTGCACACACAATAGAACAGCACAGTATGTACAACGACTTGTTTTTACCACAATGCTACTATCCTCTTCATAATCAAAACAAATCAGATATGTGCCTGGGGCGACCATTGATGCTGTTTCACCTTATGCAGATCTCAGCTTTAAGAACTCATAACTAAATTATTTTGGATAGTGGAATCCAAATTAGCACTGGTTAATTTGAAGGCTCAGCAGTCCTAGTTTTTGCCATTGTTATTTTGTTGAAGCCGATGGTTGGCATCTCTCCATTTCCATTTGGGTACTGTCATTCATACAACACTCCAACATGAATGTTTATTAAGTAGTGTCATGTATGTAGTGTGACTAAGACCGTAATTTACTgttgaagccggaagtttacatgcaccttagccaaatacatttaaactcagtttttcacaatccctgacatttaatcctagtaaaaatgccctgttttaggtcagttagaatcaccactttattttaag

Function

NR:

description
oligophrenin-1-like

GO: NA

KEGG:

id description
K20650 OPHN1, ARHGAP41; oligophrenin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618378.2 True 4320 mRNA 0.44 24 38245016 38280006

Neighbor

gene id symbol gene type direction distance location
LOC110533836 LOC106603311 coding downstream 109285 38127426 ~ 38135731 (-)
arhgap20b LOC106603313 coding downstream 132200 38065806 ~ 38112816 (-)
mtmr8 LOC106603315 coding downstream 279210 37958407 ~ 37965806 (-)
asb12a LOC106603316 coding downstream 297136 37945479 ~ 37947880 (-)
amer1 LOC106603317 coding downstream 301964 37939057 ~ 37943052 (-)
LOC110533841 LOC106603307 coding upstream 56401 38336407 ~ 38434401 (-)
LOC110533842 LOC106603306 coding upstream 265046 38545052 ~ 38617748 (-)
LOC110533851 LOC106603302 coding upstream 648463 38928469 ~ 38945732 (-)
LOC110533854 LOC106603301 coding upstream 672602 38952608 ~ 38972062 (-)
LOC110533855 LOC106603300 coding upstream 704249 38984255 ~ 39000731 (-)
G885827 NA non-coding downstream 9242 38235418 ~ 38235774 (-)
G885761 NA non-coding downstream 69659 38117202 ~ 38175357 (-)
G885509 NA non-coding downstream 180762 38062852 ~ 38064254 (-)
G885572 NA non-coding downstream 184551 38060184 ~ 38060465 (-)
G885569 NA non-coding downstream 188033 38056730 ~ 38056983 (-)
G885840 NA non-coding upstream 12786 38292792 ~ 38293032 (-)
G885869 NA non-coding upstream 75307 38355313 ~ 38355512 (-)
G885903 NA non-coding upstream 117486 38397492 ~ 38397953 (-)
G885950 NA non-coding upstream 157430 38437436 ~ 38437731 (-)
G885999 NA non-coding upstream 188679 38468685 ~ 38469374 (-)
G885767 NA other downstream 4457 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 541230 37518096 ~ 37704039 (-)
G884736 NA other downstream 926152 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 1579659 36652707 ~ 36665717 (-)
G883754 NA other downstream 1852489 36391103 ~ 36392527 (-)
rpl36a LOC106568029 other upstream 903692 39183698 ~ 39185578 (-)
G887329 NA other upstream 937307 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 1574960 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 2216708 40496714 ~ 40547393 (-)
G890360 LOC106603260 other upstream 3702695 41982701 ~ 41984417 (-)

Expression


Co-expression Network