LOC110533839 (LOC106603310)


Basic Information

Item Value
gene id LOC110533839
gene name LOC106603310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38280338 ~ 38286660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618379.2
GTTTTTTCTCTCCAGCATGTTATCAAGCCACGTGACATCATGGTCAAAGCATGACGTCTCATATCCGTCTGGACAGAGAAAATGGCGGATGTGGATGAGTTAAGTAAACCTATGTTTGCAGGTCTGTCAGATGTATCCATATCAGGAGACATCCCTGTTGAGGGGGAGATCAATGTGCCGGTTGGAACCCCCAGTCATGATGACGAATACTCCACACTGGATGAACCTGTCAAAGACACCATATTACGAGATCTGAAAGCAGTGGGGAAAAAGTTTGTTCATGTGATGTATCCTAAGAAGAGTTCAACGCTACTGAGAGACTGGGACTTGTGGGGCCCATTATTGCTCTGTGTGACACTGGCTCTGATGCTGCAGGGGGGTTCAGTTGACAGTAAGGAAGATGGAGGGCCCCAGTTTGCAGAGGTGTTTGTGATCATCTGGTTTGGATCTGTCATCATCACACTGAACTCAAAGCTGTTGGGAGGCACCATATCCTTTTTCCAGAGCCTGTGTGTGCTAGGCTACTGCATCATGCCTCTGACTGTGGCAATGGTTGTCTGTAGGCTGGTGCTGCTGGGTGGGTCTGGGATGGTCAGCTTCATCGTTCGACTAATTGTGGTCACAGCATCATTCAGTTGGTCCACGTTTGCCTCTACAGCTTTCTTAGCAGATAGCCAGCCTTCTAATCGCAAAGCTTTGGTGGTATATCCCGTCTTCCTCTTTTACTTCGTTATTGGATGGATGATTCTCACGTTCTCACCGTCTGCGTAACAGTGGACTTGTCTCTAAACTGAACTTAACACAATCCGTTTGGAATAGAAGGATACAAATCAAAACCATGTAATTTGTGAAGGATGAGGACCATGATGTGTTGGGGGTACTCTTGGTTTGAAACGTTGTGCATTTTCCTTTGGTGCCACAAGGAAAATAGTGAGATTTGACCAAAGTGCACCGtgctttgcctctctctctctttttgtttccATTATTGCTAAGCTCAGCTAAGAAATACAGTGGAGTACAATGCATACAAAAGAGTCAAAGTGAGGCTTTTCTGATATCCTTACAGGGACTATCTGCTTGATTAAACAGGCTCTCTGTGTCTCACATGAAGAGATTACTTCTAGTACACTAGCAGTAGGAAAGGGGACCATGAGATCTATATTCTATGTGACATGGTCCATTTACCTATATCACTGACTAATAGGTGATGCcagtgtgtatgtatactgtacacTGCCTTATGCCCCATTTTCAACATTTCTTAGGTTTCTGTTTTATTTAGATTATTTACAAGTAGTATTCTCATTTAAAAATGAAGATTTGATTTTCCAAGGATAGTAAGTGGCAGTGTTGCTAAATTTTCATATGAGCAACATTTAAAATTATGTACAGTAGGTGGCTGTAGTTAACATTTACTGGGGAAGGTTatgttattatatatttataaatgCCCTGTTCTCTTTCAGTAATTTAATATAATTCTATTTAAACAGAAATGTGAAAATAAACTGTAATTCTCCAAAATCTGAATAATTTGTATTTGGTtctttaatttttaatttttatatTTGGTTCTGTAATATGGTGCAAAATCATTTTTTCTGTTGTTCAGATGCCAGTCAAGATCTCAGTGTAGCATGAATCACAAGGTACACCTTAAGTACAGTCATCAAATGCATTGTACATGGGGGTAATCGCTCTGCCATTTACCACTTACAATTGACCATTGGTCCTTGTGGTTAGCTGTTacataaaatacctatccaggtgtGCTAAGATCGGGCATGTGTCAGGAaagcctgggcagaggaacaGGCTCATTTAAAGCCGAGTTTAGACTCCTAACTACTCAATATTacttgtagatcagtcagtcaccaTTTACCCATGATGCATCACGGTTTTTATGCTCTCTAACACGGCCACGGTCACATCTGGTATGCATCGTGATTTTTAAACATCTATGAGCAGGCCAAGGTTAGTAAGCAAAAGTAAGTTTATGTTGAAAAAGGGTGAATTTCCCCCTTAACTGACAAGACGCATCACACAGAGGGACTCCCGGCTTGAAGATATTGGGCTTTAGTGGTAAGTTTTAGTGGTAAGCCGGAAGTAGTTTACAAGTAAAGCCGAAAGAGGCACATATGCATCTGCTGTCGGACGACTTCTGCTCTTTCTAGGAAACGCGTCAGTGGCAGACCATGGCATTTGCCTTTGTTATTGCCGACGAGGTGGATGGTATTGAAATTCCACATCTACACAAAGCTGAACATGATCAGCATGGTCTAAGGAATGAATATCCTGATAAAGAAATTAGACACCAGTCCAAGCTCTAACATTCACAATACTTGTTTTGTATCTGTGATGGTTTTCTCAAAATATAACCAGAAATTTAGTGCATAGGCTACTAGAATGAGAGcatatgtgttattgcattatatgTGATATGCTCGTATTTTTTGTCATTACTTTATGTCCTTGAACCTTCCTCATTATTTGTGATTGTGCAACATGGAATTGTGACAGATGTGATTAAATATGGTCCACAAA

Function

NR:

description
protein YIPF6

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22943 YIPF6; protein YIPF6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618379.2 True 2550 mRNA 0.41 7 38280338 38286660

Neighbor

gene id symbol gene type direction distance location
ar-beta ar-beta coding upstream 50100 38178704 ~ 38230238 (+)
LOC110533835 NA coding upstream 162351 38117154 ~ 38117987 (+)
LOC110533834 LOC106603406 coding upstream 217025 38059762 ~ 38063313 (+)
msna LOC106567791 coding upstream 240629 38002599 ~ 38039709 (+)
LOC110533830 LOC106603314 coding upstream 287679 37973339 ~ 37992661 (+)
LOC110533840 LOC106603308 coding downstream 24161 38310821 ~ 38336289 (+)
LOC110534919 NA coding downstream 447483 38734143 ~ 38743257 (+)
LOC110533845 LOC106603305 coding downstream 468783 38755443 ~ 38815017 (+)
LOC110533846 LOC106603304 coding downstream 542958 38829618 ~ 38891890 (+)
LOC110533847 LOC106603405 coding downstream 606311 38892971 ~ 38898218 (+)
G885657 LOC106603309 non-coding upstream 10750 38267288 ~ 38269588 (+)
G885595 NA non-coding upstream 40058 38238734 ~ 38240280 (+)
G885419 NA non-coding upstream 222313 38057747 ~ 38058025 (+)
G885381 NA non-coding upstream 224651 38001713 ~ 38055687 (+)
G885668 NA non-coding downstream 3569 38290229 ~ 38290562 (+)
G885669 NA non-coding downstream 4066 38290726 ~ 38291023 (+)
G885671 NA non-coding downstream 5900 38292560 ~ 38292793 (+)
G885673 NA non-coding downstream 12229 38298889 ~ 38352818 (+)
G885706 NA non-coding downstream 60499 38347159 ~ 38347517 (+)
G883966 NA other upstream 1429185 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 1478753 36799376 ~ 36801589 (+)
G883473 om-i other upstream 1984791 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 2593765 35674201 ~ 35686573 (+)
G882624 NA other upstream 2864100 35414975 ~ 35416238 (+)
G889906 LOC106603262 other downstream 3425667 41712327 ~ 41717292 (+)
G890228 NA other downstream 3791555 42078215 ~ 42154093 (+)
G891133 NA other downstream 4696022 42982682 ~ 43109676 (+)
G891188 NA other downstream 4810060 43096720 ~ 43097617 (+)

Expression


Co-expression Network