LOC110533841 (LOC106603307)


Basic Information

Item Value
gene id LOC110533841
gene name LOC106603307
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38336407 ~ 38434401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989348.1
ATGGTCGCCCGGCCCACACTGTCCGGTGTGCTGATGGAGGCTCGTCGGATCCGAGTCACCCTACAGTACTTGGTGGACTGGGAGGGCTACGGCCCTGAGAAGCGAGCGGAATACTCCACAGACAGCaacctctaccctgtctgtccaCTGGGCCAGTTCCCCTGTGGAAACCTGTCTGTGTGCCTGCCCCAGCTTTACCACTGCAATGGGGTCCAGGACTGTACTAACGGAGCTGATGAGGAAAACTGCGTACTGGACGTGTTTCCAGAGGTATGTTTCTGTGAGGGCAGGAGAATAAACTGTAACAAAAAGGGTCTACTCAGCATCCCAACTGTGTCTTCCAATATAACAGCTCTTGAGCTGAACAGCAACCAGATAACTGCTCTCCAACCAGACCAGTTCATCCGCTACAAACACCTTGAGAGACTACACCTGGAAGACAACAGGATCAAAAGAATCTCCAAGCAGGCATTCTCAGGACTCTACTCACTAAGAAGACTATTTCTCAGTCAGAATCGGATTACGTTGTTGAAGGCTGGCATTTTTCAAGACCTTTGGAACCTGGAGTGGCTGATTCTTGATGAAAATAGAATAGCATCTCTGAGACAGAAATCGTTTGAGGGGCTGAAATCGTTATTTTTCCTGTCTTTGCTGAACAATTCCCTAGAATCCTTCCCCAAGAAATCTGTCTGCCAGGAAATGCCTAGATTAAACTGGCTAGAACTGGAGGGGAACAAGATATCATCTTTGTGGGTTTCCAGCTTTCAAAACTGCACCACTCTGACAGTATTGGCTCTTCGAAAAAACAGAATACAAACTATTGAGGAGGGAATATTTTCCGGCATGCCAAACCTGATAGACTTGGACGTATCTTTAAACAAAATTGAGGAGTTCTCACCAACTCTATTTACAAATCTTCAAAACCTAAAACAGTTGAACATCTCAAATAACCCTCTGACTCATATCTATGATGATCAGTTTGACATGTTTGTCAATTTGCAATCTCTGAGTATAGAGGAGGTCGACATACCAAACATCAGTATTCAGATGTTTCGCTCTCTTCGGAACTTGGCCCATATTTATTTTAAGAAATTTGAATACTGTGGCTACTCTCCTAATGTGCGAAGTTGCAAGCCAAACACGGACGGGATTTCAACATTTGAGAATCTTCTTGCGAACATCATCCTTCGTGTTTTTGTGTGGGTGGTGGCCTTCATCATCTGCTTTGGCAACATTTTTGTGATATGCCTGCGGTCTTGCATTGCATCCGAAAACCAGCACCACACCATGGCCATCATATCACTGTGCTGTGCTGACTGCTTGATGGGAGTATACCTGTTCTTCATTGGTGCATTCGACATCAAATACTGTGGAGAGTACAACAGACACGCCCAGCTGTGGATGGAGAGCATGCAGTGCCAGTTGATTGGCTCTCTGGCCATGCTGTCCACTGAGGTGTCAGTCATGCTTTTGACCTACATGACTATGGAGAAGTACCTGTGCATTGTGTTCCCCTTCCACAACTACAGAGCCGGACGGAAACAGACACTCTGCTACCTCATCTTCATCTGGGTCCTGGGTTTCATAATCGCCGTCATTCCCCTCTGGGACAAGCAGACGTTTGGGAATTACTACGGCAGGAATGGAGTGTGTTTTCCACTTCACTCAGACGAGATGGAGAAACCAGGTGCCCGATGCTACTCCACTGGAATATTTCTGGGGTTGAATCTCTTTGCATTCGTCATGATCGTCTTCTCCTACACCAGCATGTTTTACTCTGTACAGAAAACTGCTAAGACAGCAAGACAGTCCGTCTACAACAAGGAGGTCTCTATAGCCAAGAGGTTTTTCTTCATTGTTTTCACAGATGCCATGTGTTGGACACCTATATTCCTCCTAAAGATCCTCTCTCTTTTACAAGTGGAAATAGCAGGAACAATCGTTTTATGGGTGGTGATCTTCATCCTGCCCATCAATAGTGCCCTAAACCCCATCCTGTACACCATCACCACCAGCTCCTTCCAGGAGAGACTGAAACTCTGCCTGAAGGCCAAGTGCAAACAGACTGGGCTCAGGGAAACTTCCCAAAAAGTATCTGAAGTCTACCAGAACCCCAGCCCTCCTCCTTAACAAAAAGGAACCTCTCAGTCAGGGAGCTAGCCAACCCTCCTGGGTGTACAGGCTTTTATTCCAGTCCTTCTGGAACACACCTGATTCAGATCATCAAGATCTTGCAGATCATCTGATTAATAGGATCAGTGTGTTTGAGCAGG

Function

NR:

description
relaxin receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989348.1 True 2273 mRNA 0.46 17 38336407 38434401

Neighbor

gene id symbol gene type direction distance location
LOC110533838 LOC106603309 coding downstream 56401 38245016 ~ 38280006 (-)
LOC110533836 LOC106603311 coding downstream 200676 38127426 ~ 38135731 (-)
arhgap20b LOC106603313 coding downstream 223591 38065806 ~ 38112816 (-)
mtmr8 LOC106603315 coding downstream 370601 37958407 ~ 37965806 (-)
asb12a LOC106603316 coding downstream 388527 37945479 ~ 37947880 (-)
LOC110533842 LOC106603306 coding upstream 110651 38545052 ~ 38617748 (-)
LOC110533851 LOC106603302 coding upstream 494068 38928469 ~ 38945732 (-)
LOC110533854 LOC106603301 coding upstream 518207 38952608 ~ 38972062 (-)
LOC110533855 LOC106603300 coding upstream 549854 38984255 ~ 39000731 (-)
radx cssa04hxorf57 coding upstream 571933 39006334 ~ 39016120 (-)
G885840 NA non-coding downstream 43375 38292792 ~ 38293032 (-)
G885827 NA non-coding downstream 100633 38235418 ~ 38235774 (-)
G885761 NA non-coding downstream 161050 38117202 ~ 38175357 (-)
G885509 NA non-coding downstream 272153 38062852 ~ 38064254 (-)
G885572 NA non-coding downstream 275942 38060184 ~ 38060465 (-)
G885950 NA non-coding upstream 3035 38437436 ~ 38437731 (-)
G885999 NA non-coding upstream 34284 38468685 ~ 38469374 (-)
G886035 NA non-coding upstream 55705 38490106 ~ 38490384 (-)
G886049 NA non-coding upstream 62700 38497101 ~ 38497311 (-)
G886054 NA non-coding upstream 67936 38502337 ~ 38502642 (-)
G885767 NA other downstream 95848 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 632621 37518096 ~ 37704039 (-)
G884736 NA other downstream 1017543 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 1671050 36652707 ~ 36665717 (-)
G883754 NA other downstream 1943880 36391103 ~ 36392527 (-)
rpl36a LOC106568029 other upstream 749297 39183698 ~ 39185578 (-)
G887329 NA other upstream 782912 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 1420565 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 2062313 40496714 ~ 40547393 (-)
G890360 LOC106603260 other upstream 3548300 41982701 ~ 41984417 (-)

Expression


Co-expression Network