LOC110533848 (igbp1)


Basic Information

Item Value
gene id LOC110533848
gene name igbp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38902683 ~ 38908772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618391.2
GAAGCCGATAGTGGTCATTACATCCAAAacgttgtaaaaaaaaatggcagCCGTAGAAAGCACTAGCATGTCATTAATGCAGTCAGAAGAACCGCTTAAACTATCTGATTTATTAGATCGAGGATGGAAACTATATGAGGAGGTGGACACCACAAATGATCCCATCGCAGCCACCCATATCCAGGTCAAAATCAAGCGTGGGATAACGCAACTTGAAGTGGCAACGCGAATGGTGGCCCAACTCGACTTGTTCAGCCGAAATGAGGATTTGGAGGAGGTAGCAACCACAGATCTGAAGTATCTTATGTTGCCTGCCTTCCTGGGGGCTCTAACTTTGAAGCAAGTGAACCTGGCAAAACGACTAGACCACGTTCAGATAGCTAGATGTTACTTTTTGGACTTCTTGAAAAGATGTAAGGAGTATAACATATCAAAGTTTGAACTACCCAAAACCATTGAAAACTCCTCTGACATACCAGAAGAAGAATCTGCAAATGGGCCCCCCAAACCTCCAGACTTAATTGCGATGGCAACAGTTAGAGCGGCAAAGATAGAAAGATACAAACATAGGAAGGACACAGAGGCCAAGCTATCAGAGATCAAGGCAGCAGTGGACAGTGGGCAGGCAGATGACGAGATAGTCCGGAACTTTTACCTCCTCAATGTGAGGAAATGGATTGCTGTATCCCTGGAGGAGATAGAGAGCATTGACCAGGAAATTGAGATTTTGACCAGGATGGATGTTCTAAAACAGAGTTCAGCAGAGCCATTACACTCTAAAAGGCCTCCCATGAAACCCTTCATTCTCACCAGAGATGCTGTTCAGGCCCGAGTATTTGGGGCAGGCTACCCCAGCCTACCTACTATGTCAGTGGATGACTGGTATGAACAGCACAGGAAGAAAAATGCCTTGCCAGACCAGGGGATCCCACGCAGCGCTGAGGACTTTGATGCAGAAGAGCGAGAacaagaagagaaagagaagcgGGTTGAAAACGACGATGAGGAGGCCTTGCAGAAAGCTAGAGACTGGGACAACTGGAAGGATACGCATCGGAGAGGCTATGGGAACCGTAAAAACATGGGCTAACAGCCATCAAACAAAGCAACAGTGCCATGCCTGGTCTGCAGTGTTCATctactctctgtccctctgtaatAAACAAAAACGTTGCTGGTGTCTATGGTCTTTAAGAAAAGGGAGTTTTATACAATCCCAGACAGAAACTGTTTGTCTGTTTATGGTCACTTTTTATTCTGATGCTGCAAATCACGGCTTTAATTGTGGCCGTATCAGAGGAAAATGATTTATTGGCAGCCATTAATATTATCTGCAGGTTCCATACGAATACACAACCAAGTATTTCCACCAAGGAAATACCGTCGTCTGTCGAGATGGTGCAGTGCTATGCTTGAGAAGATTAGTAAAGTTAATTTGATGATCAATTGATTAACAGCTGTTCCCAAGCGGATTCATATTTCCTGAGAGTATCCAACAGTACTTAGACTTTTGTGAAGAACTCTACAGAGGTGGTAACAATCTATAGTTCCAAAAAACTGCTATTGTATATTGTCATCCACACTTAATGTGTTTAGTGATGGAAAAGGTAGCTTGTGTGCTTATACAGTCTCCTAAAAGGTGGCTCTATAATCCAGCATTTTGgttttgagaagaaaaaaatttCAGATCaggtgacagtacagaatgtcaccttttgtTTTGAGGGTGTTTTAATAGctgttttaccgtttagaaattaaTTTGAAGTCCTAAGTATTTTTTGACAGATTCACTTAGTGTATTCAAAAGTTGAGTATTTGGAcccatttttacatttacattttagtcatttagcagacacattTATCCGGCGCGACTTGCATTCAACAACGTATCGCAGACAAAGTAAGTACATTTTTGTCAAAGTgttatgcagtttgttttggttgtgctgCAGCTTTTGTTTTGCCCAATAATAACTGAATGGTGACTGGTTTAATTTTCTTTCTAGGTTTACAGATAATGTTTCTGAACATTTCTAAATTAATCCTGATAATGCCATGACTAAGAAAAATCATGAATAAGTGAGATGCTGagcagaggctacaacaaaatatgctaacctctcaccattaccagtaacgggaggttagcatttggggcggggggggggggtatgatctttgtaacctcactcatcattattcgtgattcattcatgattatccataaTGTCGAAGTATTCAGAAAGATCTATTcttacaataaaaataaaagtgactccaaaatgccACAACTCGGTCCCGGTCCCTGAATTCACCATTCTGTTCCTATTGGGCAAAGCAGCCCAAGTTTTTTGTAGCTTGATGTAGCCATTGTGTGtgaggaatatgggaccaaatactaaacttttgactactttaatacactataagtgaatttgtccaaatagtTATGACTTTTTAAAatgggggactagatacatacattttttaattGTACCACAGACCCTCGCTGCTGgcattctgtactgtcgcctaATATGAAACAATCTCAACTAAaatactggagtatagagccacgTTTAAAATGGTTTGCTTCACTGTCAGAATACATATGGAGTATGTACAATATTATTTCCTCTGATTGATGTCCATTGTAACACTGAATAATGGGTTTGTGATGCACTTAATTACAGAGATCCACTCCCTTTTCATCTTGTTTTGCTGAATAGTTTTTTGTTGTTAAATAACTGCCTTGTGACAGCCAATTTGCTCTTTTCTCAAAATGTATGGCTGACTCATTTGATTTCTTTCCCACCTCTTACACATGTACAGTTTGAACAGGCACTGATTTTGACAGACTTGGTGGATTCCTTTGTCAGAGTTGATAATGAGTAGTGGTTGGTCTATTTTTTTCAGAATAGCAGGAATTCTGTGTGCAAAACCTGCATGGTTCCCATTGTAACAAATTATTTGAGTGTTTTGTACTTTTCTCATTGTTTCTTAAAGAAGTTGctagtgtaaaaaaaaatatggatataGTCCAGAATAAATATGATAAGCTGCTATGGTCAAGCAAAATGTTATTGGCACACTGATATGCACACGCACAAAATGTGCATGAATCAAAATCATATATATTGAACATGACTAATATTGCTCCCATGTAACTTGATATGTGTATTTTGGTGAAAGCATCAATTGTGATCTCAAAATGTATTTCCGTTTCAAAGCCAATTAAATCAATATATTGGA
>XM_036990223.1
GAAGCCGATAGTGGTCATTACATCCAAAacgttgtaaaaaaaaatggcagCCGTAGAAAGCACTAGCATGTCATTAATGCAGTCAGAAGAACCGCTTAAACTATCTGATTTATTAGATCGAGGATGGAAACTATATGAGGAGGTGGACACCACAAATGATCCCATCGCAGCCACCCATATCCAGGTCAAAATCAAGCGTGGGATAACGCAACTTGAAGTGGCAACGCGAATGGTGGCCCAACTCGACTTGTTCAGCCGAAATGAGGATTTGGAGGAGGTAGCAACCACAGATCTGAAGTATCTTATGTTGCCTGCCTTCCTGGGGGCTCTAACTTTGAAGCAAGTGAACCTGGCAAAACGACTAGACCACGTTCAGATAGCTAGATGTTACTTTTTGGACTTCTTGAAAAGATGTAAGGAGTATAACATATCAAAGTTTGAACTACCCAAAACCATTGAAAACTCCTCTGACATACCAGAAGAAGAATCTGCAAATGGGCCCCCCAAACCTCCAGACTTAATTGCGATGGCAACAGTTAGAGCGGCAAAGATAGAAAGATACAAACATAGGAAGGACACAGAGGCCAAGCTATCAGAGATCAAGGCAGCAGTGGACAGTGGGCAGGCAGATGACGAGATAGTCCGGAACTTTTACCTCCTCAATGTGAGGAAATGGATTGCTGTATCCCTGGAGGAGATAGAGAGCATTGACCAGGAAATTGAGATTTTGACCAGGATGGATGTTCTAAAACAGAGTTCAGCAGAGCCATTACACTCTAAAAGGCCTCCCATGAAACCCTTCATTCTCACCAGAGATGCTGTTCAGGCCCGAGTATTTGGGGCAGGCTACCCCAGCCTACCTACTATGTCAGTGGATGACTGGTATGAACAGCACAGGAAGAAAAATGCCTTGCCAGACCAGGGGATCCCACGCAGCGCTGAGGACTTTGATGCAGAAGAGCGAGAacaagaagagaaagagaagcgGGTTGAAAACGACGATGAGGAGGCCTTGCAGAAAGCTAGAGACTGGGACAACTGGAAGGATACGCATCGGAGAGGCTATGGGAACCGTAAAAACATGGGCTAACAGCCAtcgcctaATATGAAACAATCTCAACTAAaatactggagtatagagccacgTTTAAAATGGTTTGCTTCACTGTCAGAATACATATGGAGTATGTACAATATTATTTCCTCTGATTGATGTCCATTGTAACACTGAATAATGGGTTTGTGATGCACTTAATTACAGAGATCCACTCCCTTTTCATCTTGTTTTGCTGAATAGTTTTTTGTTGTTAAATAACTGCCTTGTGACAGCCAATTTGCTCTTTTCTCAAAATGTATGGCTGACTCATTTGATTTCTTTCCCACCTCTTACACATGTACAGTTTGAACAGGCACTGATTTTGACAGACTTGGTGGATTCCTTTGTCAGAGTTGATAATGAGTAGTGGTTGGTCTATTTTTTTCAGAATAGCAGGAATTCTGTGTGCAAAACCTGCATGGTTCCCATTGTAACAAATTATTTGAGTGTTTTGTACTTTTCTCATTGTTTCTTAAAGAAGTTGctagtgtaaaaaaaaatatggatataGTCCAGAATAAATATGATAAGCTGCTATGGTCAAGCAAAATGTTATTGGCACACTGATATGCACACGCACAAAATGTGCATGAATCAAAATCATATATATTGAACATGACTAATATTGCTCCCATGTAACTTGATATGTGTATTTTGGTGAAAGCATCAATTGTGATCTCAAAATGTATTTCCGTTTCAAAGCCAATTAAATCAATATATTGGA

Function

symbol description
igbp1 Predicted to enable protein phosphatase 2A binding activity. Predicted to be involved in regulation of dephosphorylation. Predicted to act upstream of or within regulation of signal transduction. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in corpus callosum agenesis-intellectual disability-coloboma-micrognathia syndrome. Orthologous to human IGBP1 (immunoglobulin binding protein 1).

NR:

description
immunoglobulin-binding protein 1-like

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process

KEGG:

id description
K17606 IGBP1, TAP42; immunoglobulin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618391.2 False 3258 mRNA 0.40 6 38902683 38908772
XM_036990223.1 True 1820 mRNA 0.42 7 38902683 38908772

Neighbor

gene id symbol gene type direction distance location
LOC110533847 LOC106603405 coding upstream 4465 38892971 ~ 38898218 (+)
LOC110533846 LOC106603304 coding upstream 10793 38829618 ~ 38891890 (+)
LOC110533845 LOC106603305 coding upstream 87666 38755443 ~ 38815017 (+)
LOC110534919 NA coding upstream 159426 38734143 ~ 38743257 (+)
LOC110533840 LOC106603308 coding upstream 566394 38310821 ~ 38336289 (+)
LOC110533849 cxb1 coding downstream 7121 38915893 ~ 38920113 (+)
LOC110533852 LOC106603303 coding downstream 13570 38922342 ~ 38928260 (+)
LOC110533859 LOC106603296 coding downstream 234686 39143458 ~ 39147684 (+)
LOC110533860 LOC106568029 coding downstream 249039 39157811 ~ 39185062 (+)
LOC110533863 LOC106603293 coding downstream 318258 39227030 ~ 39234212 (+)
G886378 NA non-coding upstream 184186 38718287 ~ 38718497 (+)
G886365 NA non-coding upstream 191589 38710886 ~ 38711094 (+)
G886345 NA non-coding upstream 202017 38700432 ~ 38700666 (+)
G886341 NA non-coding upstream 207819 38694349 ~ 38694864 (+)
G886474 NA non-coding downstream 4743 38913515 ~ 38973414 (+)
G886521 cssa04hxorf57 non-coding downstream 98753 39007525 ~ 39009684 (+)
G886551 NA non-coding downstream 115555 39024327 ~ 39028030 (+)
G886602 NA non-coding downstream 184604 39093376 ~ 39098544 (+)
G886638 NA non-coding downstream 247353 39156125 ~ 39156491 (+)
G883966 NA other upstream 2051530 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 2101098 36799376 ~ 36801589 (+)
G883473 om-i other upstream 2607136 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 3216110 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 2803555 41712327 ~ 41717292 (+)
G890228 NA other downstream 3169443 42078215 ~ 42154093 (+)
G891133 NA other downstream 4073910 42982682 ~ 43109676 (+)
G891188 NA other downstream 4187948 43096720 ~ 43097617 (+)
G891741 NA other downstream 4625544 43534316 ~ 43600230 (+)

Expression


Co-expression Network