LOC110533855 (LOC106603300)


Basic Information

Item Value
gene id LOC110533855
gene name LOC106603300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38984255 ~ 39000731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990226.1
GGAGGAGTCTAGAACTAGTTCACCTGTCAGCCCGCCGCTTAATATCCTAATGACGTTAGTTAGACGAGCTAAAACTTTTCTTCGTTTTGTTATTAAATCCCATACCTTTTATCGACTGTTCAACGCGTAACGGCACTGGTAACCCACGCCGTAAAAAAATATTATGGAACCTTTAGCGAAACGGTATCTATTTTCATGGCTGTTTGTGGCTTTAAGTCTTCAGGTGTCGAGTTTACATTTTGCAGTAGCGACTTATTACACAGCCTATCTGAACGTGTCGTTTATTGATCCTGCAAACAACGAAACCATATCGCGACAAGGGGAAAGCGGACCAACGCTATATGGACAAGATTCTCCTAAAGTTACGGTGATGGGGGACGTTTATTTACCCGATCCGATTTACAGTTGCGAAAGTGATACTTTTTATGATGTGCCTAATGAGTCACAGGGGTGGATCGCCATAATTCAACGCGGCTACGAATGTACTTTTTCACAGAAGATCAATGTTGCAGCCAGTAAAGGAGCTGTTGCTGCTGTAATTTTCAATGGTCTTGGTACAAACAATACAGTCATCCAAATGTCGCATCCAGGAACAGGAGATATGGTTGCCATCATGATTAGTCACAGACGGGGCATGGAAATTGTTGAGCTGCTCAGGCAAGGGATTCCAGTCTCGATGACCATTGAGGTGGTCAAGCAGCATGGTGTCTGGATGAGCCACTACTCGGTCTTCTTCGTCTCCATCTCCTTCTTCATGATAACAGCAGTAACTGTTTGCTACTTCATCTTCTACTCGGCCCGCCGCCTCAACGTCGTTCGTCTACAAAACCTTCAACAGAAACAGCTGAAGGCAGAggccaagaaagccattggtcagcTGCAAGTCCGGACCGTGAAACGGGGAGATAAGGAGACGGGGCCTGACGCTGACACCTGTGCAGTATGCATTGACGCTTACAAGTCTGGCGACGTGCTGACCATTCTCACCTGCAATCATTTCTTCCACAAGACCTGCATTGAGCCCTGGCTAATGGAGCACAGGACCTGCCCCATGTGTAAATGTGACATCCTCAAGGCCTTGGGAGTAGAGCAGCCGGAAGAGGACCAGCCCAGTCATCAGTTGACCATGCATCCAGACATGACGTCCTACCCCAGGGTTCTAGTCCCAGAGGACACCCGCAGTGAGACAGCCTCTGCAGGCTATGCTTCTGTACAATGCACAGAGGAGCACAGCAGCCCAGCAGATGAGACCCACGTGTATGAGACATTGGGGCACCATCCTGGCCCAGGATCAATCCAAGTGGACATCTTCCAGCCCCATTATGACAACCTCGCCTTTGAGGGCAACTCACGAAACCAACGGGAACCCCTGACATGAATGGGGTGCTCACTCTAAGCACTAGACCTTGGCTAATGGGACTTGGGCCACAATCAATTACATTCGAAGATGCTTCATGACCACAGGAAACAAGGGAAACCAGGAATGTGGGTCTGATATTATTCATAGGGAAAGAGGGCTTGACCGATATATGCATATCAATTTACATGAAATTGATGAGGCAATCCTTCGATGCACTTGTCTGAGTTTGGAAATGGTACTGTCCAGTTTCATTCTGATTTAATTGTACTTTTTAtaatatgatttgatatttgattatGTTTTTTGAGGCTTAATTACGTCAGTCAATGTATCACTTCATCAGTTACTGATTTTAAATGGTTTCAATTTGCTAGTTTAACACCCACAGCTTTTTAACGTACTCAATATGCCCACACCAACAATAGTGTGGGTGTATTGAGTGAGGACGAATTAGAAGTTTTCTTGTTGTAATTAACTCGTATCATTCTTAGATTACTCATTATATTAATAGTCAGATTTAATCAACAAATCTGTAATTTAAAGAAAAAGATGAAGGGTCAAAATCATTACATATCCCATCGAGCTGCCCGTTGTCACAGTTCCAAGACCAGTCAGAAACGTCCAGCTAATCCTACGCCAAAGAGGCCGGTGAATCTCAAAATTGAACTTGGATCTGCGttaagtatcaaa

Function

NR:

description
E3 ubiquitin-protein ligase RNF128-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10629 RNF128, GRAIL; E3 ubiquitin-protein ligase RNF128

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990226.1 True 2050 mRNA 0.45 7 38984255 39000731

Neighbor

gene id symbol gene type direction distance location
LOC110533854 LOC106603301 coding downstream 12193 38952608 ~ 38972062 (-)
LOC110533851 LOC106603302 coding downstream 38523 38928469 ~ 38945732 (-)
LOC110533842 LOC106603306 coding downstream 366507 38545052 ~ 38617748 (-)
LOC110533841 LOC106603307 coding downstream 549854 38336407 ~ 38434401 (-)
LOC110533838 LOC106603309 coding downstream 704249 38245016 ~ 38280006 (-)
radx cssa04hxorf57 coding upstream 5603 39006334 ~ 39016120 (-)
LOC110533857 LOC106603298 coding upstream 23512 39024243 ~ 39096076 (-)
LOC110534920 LOC106603297 coding upstream 119423 39120154 ~ 39121838 (-)
rpl36a LOC106568029 coding upstream 183028 39183698 ~ 39185578 (-)
LOC110533862 NA coding upstream 197234 39197965 ~ 39199921 (-)
G886799 cxb1 non-coding downstream 64320 38917578 ~ 38919935 (-)
G886744 NA non-coding downstream 75493 38906460 ~ 38908762 (-)
G886764 NA non-coding downstream 103486 38858769 ~ 38880769 (-)
G886729 LOC106567779 non-coding downstream 169267 38811888 ~ 38814988 (-)
G886366 NA non-coding downstream 272615 38711401 ~ 38711640 (-)
G886839 NA non-coding upstream 4455 39005186 ~ 39022000 (-)
G886892 NA non-coding upstream 128384 39129115 ~ 39129417 (-)
G886895 NA non-coding upstream 137003 39137734 ~ 39138012 (-)
G886929 NA non-coding upstream 186393 39187124 ~ 39187343 (-)
G886887 NA non-coding upstream 193364 39194095 ~ 39194480 (-)
G885767 NA other downstream 743696 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 1280469 37518096 ~ 37704039 (-)
G884736 NA other downstream 1665391 37316917 ~ 37318864 (-)
scn4bb LOC106603364 other downstream 2318898 36652707 ~ 36665717 (-)
G883754 NA other downstream 2591728 36391103 ~ 36392527 (-)
G887329 NA other upstream 216582 39217313 ~ 39217738 (-)
ksr1a LOC106603285 other upstream 854235 39843126 ~ 39893728 (-)
LOC110533878 LOC106603271 other upstream 1495983 40496714 ~ 40547393 (-)
G890360 LOC106603260 other upstream 2981970 41982701 ~ 41984417 (-)

Expression


Co-expression Network