LOC110533868


Basic Information

Item Value
gene id LOC110533868
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39704518 ~ 39706579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618428.2
GCAAAGGAGAAGTGAGAGCGGTACAGGAAACATATCATTACTGTGCGAGCCTGATGAAGGCTTCTCTCACACCCCTTTTTCCCCCCCAGACATTTCTCTTTTATAACATTTCTCACACGTACGGCTATTATTTTTAATCTTGGCTGGCTTCTCCCGTGTTACGAAGTACCACAAACAAACTTGTCAACTCCGTCAAGAAATATGAATGGCTCCCGGGTCTGCGTCTTGCTGTACAGTGTAGTACTAATGGGATATGGGGCTAGCCCTGACACAACCATGGGACCATCTGTAGCTACAGGTTTAACCACAGCAACAAATCAAACCTCACCTACACACTCCACTTGGGCAACATCTGCAACCAACATCCCAGCAACTACCAACATCCCAGCAACCACCAACACACCATCCAGAGCCAATACTAAGGCCCATCCCAATCCCTGTGCCGACTGGCTGTTTAAGTGTCTGTTTAAGGAGATGGATGGCACCATCCTGCTGATAGTGACGGGTTGCCTGGTGGTCCTGTGTACCGTCCTGCTGGTCTCCACCGTGATGCTGTTATACCAGGTGATCCACCTGAAGCACCAGCTACGTAGCAGCACCATCAGCAGCCGCCCCACCCGCAGCAACGTAGACCTGGAGAGTGGTTCTGGGCACTGGGGCACTGGGCAGAAGACCAAGGAGAGGCCTGGCTCTGAGCCCAGTGAGACCAGCCTGATGATGCCAGAGCTCAGACAGAcgcaggagggggagaggggcaaGGAAGAGGAGCCAGAGAAGTCAGTCAAGGAGCAAGGGAAAGATGAGACGGCAAAAGCCAAGCccaagaagaaagagaaggaggcaGCCACAGCTAACGTCACGTCAGGAAGTGCTGAAAATGGAGCGGCGACCCCCAGCCAGGAGAGCCCAGTCACCACCAACCAGCCTGCAGAGCCCTCTGACCCCGCAGCCACAAcagcctctccttcctcccaggCCTCcagtgatgtggtggtggggtgaGTTGCGCACTCATGGTGACCTTCTCAGACCGCATACCGATTGGTACAGCACAGTTTTATACAACAGCTTCTATTGACATGCCCTAAAGAGACCATCTGCTTTCGCTCTGACAGGTGTTTGCGTAGACAAAGAGTGATTTTTCAATACCACAGTCGCTttttttcatttgtatttttgaaaaacaaaaataagtatttgttcaaaTGTAGAGCATTCCTCCGTGTCACTGATCAGAGGAACTGACTCCTATTTTGTCTAGTGGATATATTCACAGCTTGCTTGTTGTCACATTTCCCATTTCCCTCACTTTTTTAGACATTGTAAATGCAATAGAAATGCTGTTAATATGACAAAAGCAGAACCAACCACCACTGAACTGTAGTATCAGGTCAAGTAAAGAGACTGCATTTAGAGGATTTTAAGCATCAAAGCTCTTCCAGAAACACCCTCACAATGTATTACTACAATTCAACATCACTTTCTTGGTCTTTTCTCTACAGTAAAGAAGAATTCAAATGTTTCTACTCTAGCTCCATCTATCCTTTGTATACACCAATAAAGAATTACGACACCTTG

Function

NR:

description
uncharacterized protein LOC110533868

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618428.2 True 1578 mRNA 0.48 2 39704518 39706579

Neighbor

gene id symbol gene type direction distance location
LOC110533863 LOC106603293 coding upstream 470306 39227030 ~ 39234212 (+)
LOC110533860 LOC106568029 coding upstream 519461 39157811 ~ 39185062 (+)
LOC110533859 LOC106603296 coding upstream 556834 39143458 ~ 39147684 (+)
LOC110533852 LOC106603303 coding upstream 776258 38922342 ~ 38928260 (+)
LOC110533849 cxb1 coding upstream 784405 38915893 ~ 38920113 (+)
LOC110533867 LOC106603289 coding downstream 756 39707335 ~ 39710492 (+)
LOC118966774 NA coding downstream 81122 39787701 ~ 39789535 (+)
LOC110533109 LOC106603283 coding downstream 268591 39975170 ~ 39977790 (+)
LOC110533873 LOC106603279 coding downstream 276463 39983042 ~ 40090027 (+)
LOC110533874 LOC106603277 coding downstream 445452 40152031 ~ 40360429 (+)
G887287 NA non-coding upstream 6532 39697487 ~ 39697986 (+)
G887275 LOC106603288 non-coding upstream 23746 39678929 ~ 39680772 (+)
G887265 NA non-coding upstream 26071 39677717 ~ 39678447 (+)
G887274 NA non-coding upstream 28240 39671707 ~ 39676278 (+)
G887250 NA non-coding upstream 63183 39641125 ~ 39641335 (+)
G887311 NA non-coding downstream 25038 39731617 ~ 39731848 (+)
G887614 NA non-coding downstream 51495 39758074 ~ 39805040 (+)
G887625 LOC106603287 non-coding downstream 64714 39771293 ~ 39776652 (+)
G887632 NA non-coding downstream 77259 39783838 ~ 39801991 (+)
G887662 NA non-coding downstream 127357 39833936 ~ 39834169 (+)
LOC110533845 LOC106603305 other upstream 892379 38755443 ~ 38815017 (+)
G883966 NA other upstream 2853365 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 2902933 36799376 ~ 36801589 (+)
G883473 om-i other upstream 3408971 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4017945 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 2005748 41712327 ~ 41717292 (+)
G890228 NA other downstream 2371636 42078215 ~ 42154093 (+)
G891133 NA other downstream 3276103 42982682 ~ 43109676 (+)
G891188 NA other downstream 3390141 43096720 ~ 43097617 (+)
G891741 NA other downstream 3827737 43534316 ~ 43600230 (+)

Expression


Co-expression Network