LOC110533867 (LOC106603289)


Basic Information

Item Value
gene id LOC110533867
gene name LOC106603289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39707335 ~ 39710492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618427.2
CGCTCTGCATCCCTCTACTTCTCTCCTACACCCCTCCCACTTTCCCCCTCCCCAAGACATACACACTCTTCCCTGCACAGAGTCGGCAGTGGCTGCTCAAGCAGTAGGAGCTTACACTGTTTAATGCTCCCTGCATCACTGAACCTAAAGGATAGAAGAAGAGACAGATCCTCCTAACAGTCCATCCTccagagaataaagagagatgcAGGACAGAACCAGGGGACAAAACAGCCTCAGAAGGTAAGGAGGGAAAAGGAAGAGAGCGTTAAAAACAGTGAATGAGCGACAACCGGTCAAACCCAGGAAAATCCCTCATCAGCATTGCAGCAGCCACTCCAGTGTTTCAGGAGACAAAGGCAGGAGCTCAGCCTGGGCTGGGgaccacagaggagaggagagactggaacGCAAAGATGAGGAAAAGGCGTGTGCTACTGATGCCCCACAGTGGCCCTCCCCACTGTGTGGCCAtgctatggctgttgatgctGCTGTGTCTCCAGGCCCTGGCTGTCTGCCCCCCCATGTGTACCTGTAACCGCAGCCACAGAGAGGTGGACTGTTCCTGGAGGGGCCTGAGGACGCTGCCCCTGGGCCTGCAGCACAACCTGCACTCCCTCAACCTGTCTCACAACCGTATCCATGACCTGGATGGCCAGCTGAGTACCTTCGCCCACCTCCGCACCCTGGACCTGTCCCACAACAGGCTGGTCCGCCTGCCCACCGCCCTGCCAAAGGCACTGTGGGAGCTCCACGCTGCAGCCAACCACATCCACCTACTGGACAAGAATGACACGGCCTACCAGTGGAACCTGCGGGTCCTAGACCTGTCCAACAACAAGCTGGAGCGGGCCGTGTTCATCAACAACACCCTGACCAGCCTACGCCTGCTCAACTTCAGCAACAACCACTTCTGGACCGTGCCCACCAACATGCCAGCCAGCTTGGAGACCGTAGACCTGTCCCACAACTCCCTGGTGCAGATCCTGCCTGGCACTCTGAACCGGATGTCCAGGCTGACCACCTTCTACCTGCACTCCAACCGCTTCTCCTCTGTGGGCCCTGCGGCCTTCAGCCAGCTGGGCAGCCTGAGCCTCCTCTCCCTGGGGGACAACCCCTGGGCCTGTGAGCACCAGACCAACATCACCCACCTGCTGGCCTGGCTCCAGCACACGTCCACCCGCGTGCTTGGCTGCCCCTGCCACACTCACCCTGTCTGTGGAGAGCCCCACCCAGCCAGGACTGGAGGATGGCACTTTGCCTCATACACTCAGCCTCCCCTGGCTGCTGGTACTCAGGAGGAGAAGAGCCACCCTCCTCCCCCAGAGGCCCTCACCAGGTGGCCTTGGTACCTGTCCGAGTCTGCCCTGCTCAACACCCAGCTCCACACCAGGAGAGCCCCAGGACGCCCCAGTGGACCAGAGAACAACAACCTCTTCACAGACCACTACCCGTTCACTTCAACCCCTCTGGCCATTTCCACCCTGCCCACTGACAGGTCCCACACCGAAAGCAGCACGTCAACCACAGACGACACCTTCATAACAGACACAACCTTTACTACTGACAGCatctacactacagatacagCCTTCACCACTAACAACCCCTCTACCATCCCAAGGAGAACGGCCACCCTCCGCACCAGGAGTGTCAAGAGGGCCAACCAGGGTGGCTCCCCGGACCACAACACCAGCCCAGCCCCAAGCGCCAGGTCAACACTCCCACTAGTACTAAACCTGTGGCTCCTCCTGACTCTCACCCTGTACGTTCTCTGAAAGTTAAATTAAAATGTCTGGAGTTAATGTCCTTGTCAGTCTATTGGACAACTGCACAAATATACACAAATGAGTGTCATTAAACCAACATTCTGTTTTCTTACCATTCTGAATACTGTGTCAAACACTTACACATCTCTCAAACTAATCAATAACATATGACATGCACAGGTAGCATCGATGTACATTTTACACTACCAGTCTACCACCGTACACATCATTATTGGGATGTTGAAAAAAAAAGTTTTAGTATTCACTATCTGCATAACTCTGTTTTCATCGTTAACTTTTAATAGATCCTTAATGGCCCTTACTTCACCTCCGAGATGTGTTTGCCTGTTTCTTGACTATTAAACAGAGTTATTTCCAAACATTC

Function

NR:

description
oligodendrocyte-myelin glycoprotein-like

GO: NA

KEGG:

id description
K16666 OMG; oligodendrocyte myelin glycoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618427.2 True 2157 mRNA 0.55 2 39707335 39710492

Neighbor

gene id symbol gene type direction distance location
LOC110533868 NA coding upstream 756 39704518 ~ 39706579 (+)
LOC110533863 LOC106603293 coding upstream 473123 39227030 ~ 39234212 (+)
LOC110533860 LOC106568029 coding upstream 522278 39157811 ~ 39185062 (+)
LOC110533859 LOC106603296 coding upstream 559651 39143458 ~ 39147684 (+)
LOC110533852 LOC106603303 coding upstream 779075 38922342 ~ 38928260 (+)
LOC118966774 NA coding downstream 77209 39787701 ~ 39789535 (+)
LOC110533109 LOC106603283 coding downstream 264678 39975170 ~ 39977790 (+)
LOC110533873 LOC106603279 coding downstream 272550 39983042 ~ 40090027 (+)
LOC110533874 LOC106603277 coding downstream 441539 40152031 ~ 40360429 (+)
trnaa-ugc-41 NA coding downstream 515178 40225670 ~ 40225745 (+)
G887287 NA non-coding upstream 9349 39697487 ~ 39697986 (+)
G887275 LOC106603288 non-coding upstream 26563 39678929 ~ 39680772 (+)
G887265 NA non-coding upstream 28888 39677717 ~ 39678447 (+)
G887274 NA non-coding upstream 31057 39671707 ~ 39676278 (+)
G887250 NA non-coding upstream 66000 39641125 ~ 39641335 (+)
G887311 NA non-coding downstream 21125 39731617 ~ 39731848 (+)
G887614 NA non-coding downstream 47582 39758074 ~ 39805040 (+)
G887625 LOC106603287 non-coding downstream 60801 39771293 ~ 39776652 (+)
G887632 NA non-coding downstream 73346 39783838 ~ 39801991 (+)
G887662 NA non-coding downstream 123444 39833936 ~ 39834169 (+)
LOC110533845 LOC106603305 other upstream 895196 38755443 ~ 38815017 (+)
G883966 NA other upstream 2856182 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 2905750 36799376 ~ 36801589 (+)
G883473 om-i other upstream 3411788 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4020762 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 2001835 41712327 ~ 41717292 (+)
G890228 NA other downstream 2367723 42078215 ~ 42154093 (+)
G891133 NA other downstream 3272190 42982682 ~ 43109676 (+)
G891188 NA other downstream 3386228 43096720 ~ 43097617 (+)
G891741 NA other downstream 3823824 43534316 ~ 43600230 (+)

Expression


Co-expression Network