LOC118966774


Basic Information

Item Value
gene id LOC118966774
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39787701 ~ 39789535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053662.1
CAAATAATTACATTATCTTCCATATTCCTAGATACCTTGTAACTGGAGATTCCTTCAAAACGATTGACTACAGTTAACGTGTAGGGCACTGcaaggttgggtgaccagggccatctgggaatgcctcctggaggaattcaggtgtgtgaaggctacctgtgtcctgcataacttcatgaggatggacacgAGAACAAGGAGGGGATCTGCAGCTCGCCGCCATGTGCCAGAGAAGTCTGCTGCTCTGCAGGATGTTTCAAGGATGAGGTCCAACAACGCAGCAAGAGGCAATCTGTGTACAGGAGATCTTCACCTCCTACTTCTTTGAAGAGGGTGCTGTTCCCTGGgaacaccatagactacactatgcacaaccaaaggctcttttaagagccattcacattgcaataagagtatttttccatttacttatgtcaactgcagttattCAGTTCCCAGTTTCTCTCCCTTTGATTTCTTCTTCTCAGGTGAGGATGCTGTGATGTCTGTACAAAAACAAAGAGACACCCTATAACCCACACCCATTTATCAATCTGATTGGATTGTGTTATGCAGTAAGCAGGCTCATGTGTAATACTGtggctccttccaccttcaaagaataggcaagagggccaaccatggagaatagtaaaaCACTAAATTATTTCTATAACTATGCTATATTGTTTGTCCTcgtgtgtctgtttgttttgcagcataaagtactctgcagCCAGCGTGGTGCGGACACCAGgttatatcagctgtgttggTGAACCCCTTCCGCAACTGAACTGGCTAaatagagggcacagcatgatcagagttatgttttgatgtgagagaggatgccaTTCCCCCGTCCCATCATcgccagctcacctgcttttaagATAAACTTCGGGCCGACTAGACGCTATTATGTAATTGTGACGAACAGAGAATATTTGGGTAGCACTGGGATTCAATTCAATATGCTGCCTTTCCTGCTCCTATATTCTTATACCTCTCAcctcctttcttcctctgtttttataAATGCACAAGAGATGTGCATTGAAgaacagattgaacttgtatttataatactACAATTATAAATGCATGCATTTATAACACTTGGATAATTTACTTCTTTCAAAAcgtttcacattctctactggttgaaatACTAAACATATCCTGTGTTAATCAgatcaatgcagatgaagggcATTAGATATTGCAATTAACTGGTTTTAGAGTATTTACATGATGCATAGGAAGTGTAGTGTTCTGCTGTTTAAATCATATATGAATTGTAAATCAGCCATTAACTAGTTAAATCCTTTTTCTAGTCTATTCATTACAATGTGTATCCATTGTCCCAGGACCAAGATtagtaaacactgttgaagtgtatactGCAATTGTAATACATGCATGCAGACACATCATTCAAAGACTGGAATttgatactcctggtattggatatgactgaaataATCTCAGACACTCATACCTGAAatgcaccttta

Function

NR:

description
uncharacterized protein LOC100191015

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053662.1 True 1520 mRNA 0.41 3 39787701 39789535

Neighbor

gene id symbol gene type direction distance location
LOC110533867 LOC106603289 coding upstream 77209 39707335 ~ 39710492 (+)
LOC110533868 NA coding upstream 81122 39704518 ~ 39706579 (+)
LOC110533863 LOC106603293 coding upstream 553489 39227030 ~ 39234212 (+)
LOC110533860 LOC106568029 coding upstream 602644 39157811 ~ 39185062 (+)
LOC110533859 LOC106603296 coding upstream 640017 39143458 ~ 39147684 (+)
LOC110533109 LOC106603283 coding downstream 185635 39975170 ~ 39977790 (+)
LOC110533873 LOC106603279 coding downstream 193507 39983042 ~ 40090027 (+)
LOC110533874 LOC106603277 coding downstream 362496 40152031 ~ 40360429 (+)
trnaa-ugc-41 NA coding downstream 436135 40225670 ~ 40225745 (+)
LOC110533875 LOC106603275 coding downstream 576661 40366196 ~ 40378922 (+)
G887625 LOC106603287 non-coding upstream 11049 39771293 ~ 39776652 (+)
G887311 NA non-coding upstream 55853 39731617 ~ 39731848 (+)
G887287 NA non-coding upstream 89715 39697487 ~ 39697986 (+)
G887275 LOC106603288 non-coding upstream 106929 39678929 ~ 39680772 (+)
G887265 NA non-coding upstream 109254 39677717 ~ 39678447 (+)
G887662 NA non-coding downstream 44401 39833936 ~ 39834169 (+)
G887740 NA non-coding downstream 176161 39965696 ~ 39965895 (+)
G887768 NA non-coding downstream 223820 40013355 ~ 40014131 (+)
G887756 NA non-coding downstream 306637 40096172 ~ 40099870 (+)
LOC110533845 LOC106603305 other upstream 975562 38755443 ~ 38815017 (+)
G883966 NA other upstream 2936548 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 2986116 36799376 ~ 36801589 (+)
G883473 om-i other upstream 3492154 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4101128 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1922792 41712327 ~ 41717292 (+)
G890228 NA other downstream 2288680 42078215 ~ 42154093 (+)
G891133 NA other downstream 3193147 42982682 ~ 43109676 (+)
G891188 NA other downstream 3307185 43096720 ~ 43097617 (+)
G891741 NA other downstream 3744781 43534316 ~ 43600230 (+)

Expression


Co-expression Network