LOC118966773


Basic Information

Item Value
gene id LOC118966773
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39795348 ~ 39796606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053661.1
CTGGAGGATAAAAAGACAGACAACACGACTGTCAAAAATGAGGAAGACACCTGGGCCATTTTATGCCACAGATTTAATGGATCGACACGGATTAAAGAAAAAAGGAACCCAAATCAAATGAAGGTGTGCTGGAAAAACGCGAAGCGAAAGCGAAAGCAAAAGCAAAAAAAGGATGCAGCAGAGGCGAGTGCTATTTCAGACCGGAGGGGGCCTCCGTCCAAGAGAATTGATCCTCTCTCCCAGAAGATTTGAGAGATGGTTCCCCAGCAGTTTGCCCCTCTCCTTTACCCTTATGATGACGACGGACAACTCGGCCCACCGATATTTAGTAAACATAAATAACTGGGACTCCTGAaacaaccagcaaaccaggctgtcgtaATGTGAATCAGTGGATGTaaataatctagctagctaaagcatttattgcaaattgaatgtacaattttgGAAGCTTGCCTTGCTGATATTTGCCATGCAATACAGAAAGATGAAGTAA
>TU1010399
AGAAGATTTGAGAGATGGTTCCCCAGCAGTTTGCCCCTCTCCTTTACCCTTATGATGACGACGGACAACTCGGCCCACCGATATTTAGTAAACATAAATAACTGGGACTCCTGAaacaaccagcaaaccaggctgtcgtaATGTGAATCAGTGGATGTaaataatctagctagctaaagcatttattgcaaattgaatgtacaattttgGAAGCTTGCCTTGCTGATATTTGCCATGCAATACAGAAAGATGAAGTAACGTAGTTATTATGTTCTTGCTTATTGTGCAGTGGAGGATACAAATACCTGTATTGTAACctgtacatttaatatattcactgatcatgtactctacctTGGAAAATAAAGGTGCAGTTCAGGTATGAATGTCTTTGAGATTATTTCAGTCATATCCATACCAGGAGTATCAAATTCCAGtgtttgaatgatgctgtgtctgcattacaattatacacttcaacagtgtttaccaatctTGGTCCCAGGACAGTGGTTACACATGGTTCCCTACGACTAGAAAAAGGATTTAACTActtaaaggctgatttgtaattcacaTATATATTTAAACAGAACATTACACTTCCTATGCATCATGTAAATACTCTAAAACCAGTTAATCACAATATCTAATGCCCTTCATTTGCATTGATCTGATAAACACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053661.1 False 499 mRNA 0.43 2 39795776 39796606
TU1010399 True 686 lncRNA 0.37 2 39795348 39796365

Neighbor

gene id symbol gene type direction distance location
LOC110533869 LOC106603287 coding downstream 20008 39771290 ~ 39775768 (-)
LOC110533866 LOC106603288 coding downstream 47345 39671573 ~ 39748431 (-)
LOC110533865 LOC106603290 coding downstream 124399 39641988 ~ 39671377 (-)
LOC110533864 LOC106603292 coding downstream 161091 39310186 ~ 39634685 (-)
LOC110533862 NA coding downstream 595855 39197965 ~ 39199921 (-)
ksr1a LOC106603285 coding upstream 46520 39843126 ~ 39893728 (-)
LOC110533871 LOC106603284 coding upstream 107566 39904172 ~ 39919322 (-)
LOC110533872 LOC106603282 coding upstream 124155 39920761 ~ 39964811 (-)
LOC110533878 LOC106603271 coding upstream 700114 40496714 ~ 40547393 (-)
LOC110533881 LOC106603270 coding upstream 834559 40631165 ~ 40639661 (-)
G887606 NA non-coding downstream 46438 39749058 ~ 39749338 (-)
G887596 NA non-coding downstream 59974 39735599 ~ 39735802 (-)
G887595 NA non-coding downstream 60633 39734867 ~ 39735143 (-)
G887563 NA non-coding downstream 154017 39641537 ~ 39641759 (-)
G887564 NA non-coding downstream 154530 39640799 ~ 39641246 (-)
G888112 NA non-coding upstream 515 39797121 ~ 39830274 (-)
G888113 NA non-coding upstream 36821 39833427 ~ 39833813 (-)
G888141 NA non-coding upstream 40998 39837604 ~ 39837873 (-)
G888135 NA non-coding upstream 100248 39896854 ~ 39899447 (-)
G888272 NA non-coding upstream 277384 40073990 ~ 40075124 (-)
G887329 NA other downstream 578038 39217313 ~ 39217738 (-)
rpl36a LOC106568029 other downstream 610282 39183698 ~ 39185578 (-)
G885767 NA other downstream 1555217 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 2091990 37518096 ~ 37704039 (-)
G884736 NA other downstream 2476912 37316917 ~ 37318864 (-)
G890360 LOC106603260 other upstream 2186095 41982701 ~ 41984417 (-)
G890385 LOC100136012 other upstream 2191105 41987711 ~ 41989801 (-)
G890403 NA other upstream 2280135 42076741 ~ 42077947 (-)

Expression


Co-expression Network