LOC110533871 (LOC106603284)


Basic Information

Item Value
gene id LOC110533871
gene name LOC106603284
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39904172 ~ 39919322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618436.2
CCCAAATACATGGTCAAGCAAGGCTATCCGCGCCCAACTGTATTTGCGTGATGGCTTGGCGGTCGTAGAGAGGTGGTAAGAGGGAGACGACACCGGTCACGGTGTGGACCATCAGTCAATGGATGACAGCCCAGCATTCGGTCGCAACCGCAACTTGCGCCAAGAGAAAACACCACTTTTGGTCAACGTTTACCCTCGACCCTCGGGTAAACCAAGCATTGTTTTTTAATGTTGATAATAGCAACGGGGTGGCTAACGTCATTTTTCTAGCTTCAGATGTTCGTCCGCTCTTCACCTGGTGCTGAAGGAATGTGTGGGTTGGAAGTGTTAGGACACATCTAGTCTCTGCTCAGAGAGAACACATCTAGTCCACCTCTGCTCAGAGAGAACACATCTAGTCCACCTCTTCTCAGAGAGAACATAGCGCTGTGTCTTCCACACACTGCCTGCCTGGGGAGGCCAGCCACCACATCCTCAGAGCATTGGATGCAGCTGGGTCAAaaccagaggagaagagagaatggcTTTCTGTGGTGCTGTGATGATAAGAGGATAACGGGGCCAAGCACTGAGGGCCCTGAGGTGGACAGACACAGTTGAAGCAGCAGGCCAGGGTTGAGCCAGGCAGGCAGTGGGCACCCACCGTCCAGGGACCAGGAGCCATCATTTCTCGGGTGGTGTGGCCGGCGCGGAGGAGGGGCGCCGTGCGGAGGCTGGGGGCACTCTGGATGATGACCAGCCTGTTCCGCCGCCGCAACAGTGGTAACCATGGTGATGTGGCGTCACACAGCGACAGCCCAGTCCCAGCTGAACTCAACAACGGTAATCCCAGTGGGGGTGGGCGAACGGTGCGGCGTCTGGAGTTCAACCAGGCTATGGAGGACTTCAGTACTATGTTCCCCAGCATGGAGCAGGAGGTGATAGAGTGTGTGCTGCGGGCCAACCACGGAGCCGTGGACTCCACTATCGACCAGCTGCTCCAGATGAGCCTGGAAGGACACGGCTCTGATGACGGCTCCGACTCAGAGGACAGCATCCCCCCTGAGATCCTGGAGCGGACGTTGGAGCCGGACAGCTCTGACGAGGAGCCCCCGCCGGTCTACTCTCCGCCCTCCTATGACATGCACATCTACGACAGGAAGTACCCAGATCAGGTCCTGCCCACAGCATCACCACCACCCAGCTTTGATGCCAGTCAATCCCGTCCCTGCCAGGCCCCTCCTGGTACACACCCTCCTGCCAGTCAAAGGCAGATTGGAAGTTACAGGAACTGGAACCCACCGTTACTAGGCAACCTCCCTGATGATTTCCTCCGGATCCTGCCTCAGCAGCTGGACAGTCTGCCACGTTCTCACAGCAGCCTAACGCCGACTAGTCTGACCCAGccctcctgctcttcctccctGTTGTCCATGACGCAGCAGGTTGAGCCTGGGGCTGGGGCGGCGGCCAGGGCAGGCCAGGTTGGCATGGAGACGGACCAGGAGAGAAAGCTGAAGCAGTACTTGGAGGATGAGCGCATAGCCCTCTTCCTGCAGAACGAGGAGTTTATGAGGGAGCTGCAGCGCAACCGCGAGTTCCTCATCGCCCTTGAGAGAGATCGGCTGCAGTATGAGTCAAAGGCATCCAAGTCCCATCATTCACCAGCTTTCATGGGGACGTCCACTCCAGGAGATAATTGTGCCTCAGGCTCTGGGGAGGCCTGCACCAATGTTACAGATGACGCCTTGTTCCGTGACAAACTCAAGCACATGGGCAAATCTACGCGAAAGAAGCTTTTTGAAATCGCTAGAGCTTTCTCTGAAAACACCCGAAGAAGAAAAACAAAAAGGAGGGCCCTCATGAAACATCATTCACTGGGTAATGCTGCCTCCACTGCCAACCTCTTGGAAGATGAAGAAGCTGGACACCTGAGTGAGGAGGACAGCATGCTCAAGAGACCAGGCCCTCAGGAAGAGGAGGTGCCCCAACAGGAAGTGTTATCATGAGTTGTCATATAGTTTTGTCTGTGACAATGGAAGAACAATATGGCTCACACTACCCTCTCCATGACCTGAACCAGCCTGTCCCAAGTCCTTTGGAATATTACTACCTTCAGATGAAATTTCCCAGTTATGAAGTCGTAAGTCCTGTTTTAGAAGTCAGAGCAATTCTTCCCACCAATGAGATTTCATGTAGCGCGATGAGCTAGCTAATgataaagttagctagcttgcttaaCTTTGACAATATGGTAAACTAGCTATTATCCACATTGATAAGTTTGACAGCGTCAAACATTCATTTGCTTTATCATCTTATGGTTGATGAAAGGTCAATGATGAAACGTCACAGCTCTTAAATTGGTTATCTTCTCTAACTTTCACTCTTGGAATTCCAACATGGGAGGATTGTTCAAGTGCTTATTTCCCAGTCGGAACATCGTATTTCCCACTTGAGTAGCATTTGAAGGCAGCATATTGCTCTTTTGATTTCATGTTTCAGAAATCATCAAACTAGCTAGTTAGgcactttttaaaatatttaagtTATATGTCAAATGTATTGTTATTGATGGTGATACAGTAAAGGCACAATGAAAGCTGGAGTTGTAATTCTGATAGGACTCAGGACCCTAGTGCATTTTACTCTCATATGAATGGATTTGAACATGTCTAGCTCCGGAACATTCAAACAGTCCATGTGTGCAACACGGAATGTTCTAGTTTATGCTTCCCCCAATGCAATTATATTCTCCCAATCTGAGACTATATTCTCTACCAAGTTGTCTGCCTTAAGGTTCAACAACAAGGTCCAGATAGGACGTTTTCTCCCATTGATCTaatggtacagttgaagtcgaaagtttacatacatttaggttggagtcatttaaaactagtttttcaactactccacaaatttcttgttaacaaattatagtatTGGCAatttggttaggacat
>XM_036990251.1
CCCAAATACATGGTCAAGCAAGGCTATCCGCGCCCAACTGTATTTGCGTGATGGCTTGGCGGTCGTAGAGAGGTGGTAAGAGGGAGACGACACCGGTCACGGTGTGGACCATCAGTCAATGGATGACAGCCCAGCATTCGGTCGCAACCGCAACTTGCGCCAAGAGAAAACACCACTTTTGGTCAACGTTTACCCTCGACCCTCGGGTGCTGAAGGAATGTGTGGGTTGGAAGTGTTAGGACACATCTAGTCTCTGCTCAGAGAGAACACATCTAGTCCACCTCTGCTCAGAGAGAACACATCTAGTCCACCTCTTCTCAGAGAGAACATAGCGCTGTGTCTTCCACACACTGCCTGCCTGGGGAGGCCAGCCACCACATCCTCAGAGCATTGGATGCAGCTGGGTCAAaaccagaggagaagagagaatggcTTTCTGTGGTGCTGTGATGATAAGAGGATAACGGGGCCAAGCACTGAGGGCCCTGAGGTGGACAGACACAGTTGAAGCAGCAGGCCAGGGTTGAGCCAGGCAGGCAGTGGGCACCCACCGTCCAGGGACCAGGAGCCATCATTTCTCGGGTGGTGTGGCCGGCGCGGAGGAGGGGCGCCGTGCGGAGGCTGGGGGCACTCTGGATGATGACCAGCCTGTTCCGCCGCCGCAACAGTGGTAACCATGGTGATGTGGCGTCACACAGCGACAGCCCAGTCCCAGCTGAACTCAACAACGGTAATCCCAGTGGGGGTGGGCGAACGGTGCGGCGTCTGGAGTTCAACCAGGCTATGGAGGACTTCAGTACTATGTTCCCCAGCATGGAGCAGGAGGTGATAGAGTGTGTGCTGCGGGCCAACCACGGAGCCGTGGACTCCACTATCGACCAGCTGCTCCAGATGAGCCTGGAAGGACACGGCTCTGATGACGGCTCCGACTCAGAGGACAGCATCCCCCCTGAGATCCTGGAGCGGACGTTGGAGCCGGACAGCTCTGACGAGGAGCCCCCGCCGGTCTACTCTCCGCCCTCCTATGACATGCACATCTACGACAGGAAGTACCCAGATCAGGTCCTGCCCACAGCATCACCACCACCCAGCTTTGATGCCAGTCAATCCCGTCCCTGCCAGGCCCCTCCTGGTACACACCCTCCTGCCAGTCAAAGGCAGATTGGAAGTTACAGGAACTGGAACCCACCGTTACTAGGCAACCTCCCTGATGATTTCCTCCGGATCCTGCCTCAGCAGCTGGACAGTCTGCCACGTTCTCACAGCAGCCTAACGCCGACTAGTCTGACCCAGccctcctgctcttcctccctGTTGTCCATGACGCAGCAGGTTGAGCCTGGGGCTGGGGCGGCGGCCAGGGCAGGCCAGGTTGGCATGGAGACGGACCAGGAGAGAAAGCTGAAGCAGTACTTGGAGGATGAGCGCATAGCCCTCTTCCTGCAGAACGAGGAGTTTATGAGGGAGCTGCAGCGCAACCGCGAGTTCCTCATCGCCCTTGAGAGAGATCGGCTGCAGTATGAGTCAAAGGCATCCAAGTCCCATCATTCACCAGCTTTCATGGGGACGTCCACTCCAGGAGATAATTGTGCCTCAGGCTCTGGGGAGGCCTGCACCAATGTTACAGATGACGCCTTGTTCCGTGACAAACTCAAGCACATGGGCAAATCTACGCGAAAGAAGCTTTTTGAAATCGCTAGAGCTTTCTCTGAAAACACCCGAAGAAGAAAAACAAAAAGGAGGGCCCTCATGAAACATCATTCACTGGGTAATGCTGCCTCCACTGCCAACCTCTTGGAAGATGAAGAAGCTGGACACCTGAGTGAGGAGGACAGCATGCTCAAGAGACCAGGCCCTCAGGAAGAGGAGGTGCCCCAACAGGAAGTGTTATCATGAGTTGTCATATAGTTTTGTCTGTGACAATGGAAGAACAATATGGCTCACACTACCCTCTCCATGACCTGAACCAGCCTGTCCCAAGTCCTTTGGAATATTACTACCTTCAGATGAAATTTCCCAGTTATGAAGTCGTAAGTCCTGTTTTAGAAGTCAGAGCAATTCTTCCCACCAATGAGATTTCATGTAGCGCGATGAGCTAGCTAATgataaagttagctagcttgcttaaCTTTGACAATATGGTAAACTAGCTATTATCCACATTGATAAGTTTGACAGCGTCAAACATTCATTTGCTTTATCATCTTATGGTTGATGAAAGGTCAATGATGAAACGTCACAGCTCTTAAATTGGTTATCTTCTCTAACTTTCACTCTTGGAATTCCAACATGGGAGGATTGTTCAAGTGCTTATTTCCCAGTCGGAACATCGTATTTCCCACTTGAGTAGCATTTGAAGGCAGCATATTGCTCTTTTGATTTCATGTTTCAGAAATCATCAAACTAGCTAGTTAGgcactttttaaaatatttaagtTATATGTCAAATGTATTGTTATTGATGGTGATACAGTAAAGGCACAATGAAAGCTGGAGTTGTAATTCTGATAGGACTCAGGACCCTAGTGCATTTTACTCTCATATGAATGGATTTGAACATGTCTAGCTCCGGAACATTCAAACAGTCCATGTGTGCAACACGGAATGTTCTAGTTTATGCTTCCCCCAATGCAATTATATTCTCCCAATCTGAGACTATATTCTCTACCAAGTTGTCTGCCTTAAGGTTCAACAACAAGGTCCAGATAGGACGTTTTCTCCCATTGATCTaatggtacagttgaagtcgaaagtttacatacatttaggttggagtcatttaaaactagtttttcaactactccacaaatttcttgttaacaaattatagtatTGGCAatttggttaggacat

Function

NR:

description
CUE domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618436.2 False 2945 mRNA 0.50 11 39904172 39919322
XM_036990251.1 True 2853 mRNA 0.50 11 39904172 39919322

Neighbor

gene id symbol gene type direction distance location
ksr1a LOC106603285 coding downstream 10444 39843126 ~ 39893728 (-)
LOC110533108 LOC106603286 coding downstream 95536 39789877 ~ 39808636 (-)
LOC118966773 NA coding downstream 107566 39795348 ~ 39796606 (-)
LOC110533869 LOC106603287 coding downstream 128404 39771290 ~ 39775768 (-)
LOC110533866 LOC106603288 coding downstream 155741 39671573 ~ 39748431 (-)
LOC110533872 LOC106603282 coding upstream 1439 39920761 ~ 39964811 (-)
LOC110533878 LOC106603271 coding upstream 577398 40496714 ~ 40547393 (-)
LOC110533881 LOC106603270 coding upstream 711843 40631165 ~ 40639661 (-)
LOC110533882 LOC106603268 coding upstream 920780 40840102 ~ 40853480 (-)
LOC110533890 LOC106603263 coding upstream 1337502 41256824 ~ 41441750 (-)
G888135 NA non-coding downstream 4725 39896854 ~ 39899447 (-)
G888141 NA non-coding downstream 66299 39837604 ~ 39837873 (-)
G888113 NA non-coding downstream 70359 39833427 ~ 39833813 (-)
G888112 NA non-coding downstream 73898 39797121 ~ 39830274 (-)
G888272 NA non-coding upstream 154668 40073990 ~ 40075124 (-)
G888286 NA non-coding upstream 187888 40107210 ~ 40107587 (-)
G888287 NA non-coding upstream 188620 40107942 ~ 40108218 (-)
G888288 NA non-coding upstream 189103 40108425 ~ 40108708 (-)
G888293 NA non-coding upstream 195336 40114658 ~ 40114903 (-)
G887329 NA other downstream 686434 39217313 ~ 39217738 (-)
rpl36a LOC106568029 other downstream 718678 39183698 ~ 39185578 (-)
G885767 NA other downstream 1663613 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 2200386 37518096 ~ 37704039 (-)
G890360 LOC106603260 other upstream 2063379 41982701 ~ 41984417 (-)
G890385 LOC100136012 other upstream 2068389 41987711 ~ 41989801 (-)
G890403 NA other upstream 2157419 42076741 ~ 42077947 (-)
LOC110533946 mpp1 other upstream 3139688 43057611 ~ 43070230 (-)

Expression


Co-expression Network